Wall clock time and date at job start Tue Mar 31 2020 06:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47021 * 2 1 4 4 C 1.52996 * 109.47446 * 119.99891 * 2 1 3 5 5 N 1.46903 * 109.47218 * 306.00923 * 4 2 1 6 6 C 1.46848 * 110.99900 * 282.64430 * 5 4 2 7 7 C 1.53035 * 109.52168 * 174.15953 * 6 5 4 8 8 C 1.53123 * 109.28101 * 59.17595 * 7 6 5 9 9 C 1.53114 * 109.16033 * 302.34874 * 8 7 6 10 10 H 1.09006 * 109.50387 * 297.66788 * 9 8 7 11 11 C 1.50703 * 109.50359 * 177.59382 * 9 8 7 12 12 H 1.08000 * 120.00073 * 245.27531 * 11 9 8 13 13 C 1.37875 * 119.99792 * 65.27691 * 11 9 8 14 14 N 1.31514 * 120.00580 * 5.32905 * 13 11 9 15 15 Si 1.86803 * 119.99850 * 185.33178 * 13 11 9 16 16 H 1.48502 * 109.47298 * 84.99641 * 15 13 11 17 17 H 1.48500 * 109.47110 * 324.99605 * 15 13 11 18 18 H 1.48497 * 109.47319 * 204.99883 * 15 13 11 19 19 C 1.46842 * 111.00237 * 158.43056 * 5 4 2 20 20 C 1.52999 * 109.47296 * 240.00204 * 2 1 3 21 21 F 1.39899 * 109.46991 * 299.99915 * 20 2 1 22 22 F 1.39896 * 109.47382 * 59.99589 * 20 2 1 23 23 F 1.39895 * 109.47033 * 179.97438 * 20 2 1 24 24 H 1.09000 * 109.47230 * 299.99747 * 1 2 3 25 25 H 1.08996 * 109.46984 * 60.00528 * 1 2 3 26 26 H 1.09010 * 109.46541 * 180.02562 * 1 2 3 27 27 H 0.96698 * 114.00636 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47780 * 186.01003 * 4 2 1 29 29 H 1.09001 * 109.47348 * 66.00708 * 4 2 1 30 30 H 1.08999 * 109.46130 * 54.14286 * 6 5 4 31 31 H 1.09000 * 109.45242 * 294.16722 * 6 5 4 32 32 H 1.09003 * 109.50498 * 299.24003 * 7 6 5 33 33 H 1.08998 * 109.50496 * 179.11973 * 7 6 5 34 34 H 1.09000 * 109.52335 * 182.43851 * 8 7 6 35 35 H 1.09004 * 109.57025 * 62.28154 * 8 7 6 36 36 H 0.96992 * 120.00367 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.46123 * 65.82322 * 19 5 4 38 38 H 1.09002 * 109.46279 * 305.85486 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.4357 -0.1175 2.4443 6 6 2.0896 1.1539 2.7796 7 6 1.3437 1.8232 3.9362 8 6 1.3495 0.8891 5.1495 9 6 0.7067 -0.4449 4.7599 10 1 -0.3322 -0.2787 4.4748 11 6 0.7617 -1.3911 5.9315 12 1 1.3565 -2.2906 5.8718 13 6 0.0525 -1.1086 7.0796 14 7 -0.7536 -0.0701 7.1159 15 14 0.2366 -2.2009 8.5838 16 1 1.4148 -1.7613 9.3736 17 1 0.4272 -3.6091 8.1525 18 1 -0.9858 -2.1008 9.4209 19 6 1.4710 -1.0484 3.5794 20 6 2.0401 -0.7212 -1.2492 21 9 1.5738 -2.0402 -1.2493 22 9 1.5737 -0.0618 -2.3915 23 9 3.4390 -0.7206 -1.2495 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 2.9703 1.4238 0.0004 28 1 3.1247 -0.6290 1.3047 29 1 1.7673 -1.7752 1.1971 30 1 2.0748 1.8104 1.9096 31 1 3.1218 0.9646 3.0743 32 1 0.3150 2.0251 3.6375 33 1 1.8385 2.7592 4.1952 34 1 0.7822 1.3434 5.9618 35 1 2.3761 0.7178 5.4735 36 1 -1.2522 0.1289 7.9237 37 1 2.5062 -1.2273 3.8702 38 1 1.0071 -1.9914 3.2903 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397701646.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:01 Heat of formation + Delta-G solvation = -210.545369 kcal Electronic energy + Delta-G solvation = -23821.777036 eV Core-core repulsion = 19862.715970 eV Total energy + Delta-G solvation = -3959.061066 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.25869 -47.78107 -47.70271 -39.19197 -37.12787 -33.75963 -32.45059 -30.94405 -29.86803 -26.80620 -25.72164 -24.93155 -22.30213 -21.56959 -20.79302 -18.94862 -18.60497 -18.48556 -18.33264 -16.40672 -16.04746 -15.40834 -14.94058 -14.58000 -14.53412 -14.35885 -14.17545 -14.00166 -13.89236 -13.84691 -13.56177 -13.27421 -12.83069 -12.46123 -12.43992 -12.32469 -12.17764 -11.74291 -11.32696 -11.22793 -10.96836 -10.79876 -10.69005 -10.48808 -10.01232 -9.89661 -9.49029 -8.99037 -8.74670 -8.32774 -7.80153 -6.01213 -4.04939 2.52250 3.30146 3.36942 3.38978 3.50544 3.56131 3.84909 4.24416 4.39131 4.54376 4.64874 4.82541 5.31083 5.40740 5.53079 5.72401 5.76719 5.79942 5.82838 6.08086 6.24149 6.32869 6.37369 6.46384 6.67992 6.70670 6.88973 7.15297 7.16457 7.29349 7.54838 7.67147 7.74136 8.00424 8.08957 8.44482 8.99555 9.59034 11.07294 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.032132 B = 0.004346 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.196229 B = 6440.521366 C = 6785.287418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.108 3.892 3 O -0.522 6.522 4 C 0.026 3.974 5 N -0.523 5.523 6 C 0.048 3.952 7 C -0.115 4.115 8 C -0.108 4.108 9 C 0.056 3.944 10 H 0.041 0.959 11 C -0.518 4.518 12 H 0.053 0.947 13 C 0.065 3.935 14 N -0.887 5.887 15 Si 0.888 3.112 16 H -0.281 1.281 17 H -0.275 1.275 18 H -0.287 1.287 19 C 0.066 3.934 20 C 0.422 3.578 21 F -0.178 7.178 22 F -0.178 7.178 23 F -0.188 7.188 24 H 0.106 0.894 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.380 0.620 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.019 0.981 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.030 0.970 36 H 0.260 0.740 37 H 0.019 0.981 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.675 1.368 -15.120 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.064 3.936 3 O -0.328 6.328 4 C -0.103 4.103 5 N -0.247 5.247 6 C -0.080 4.080 7 C -0.153 4.153 8 C -0.146 4.146 9 C 0.037 3.963 10 H 0.059 0.941 11 C -0.556 4.556 12 H 0.071 0.929 13 C -0.136 4.136 14 N -0.525 5.525 15 Si 0.716 3.284 16 H -0.207 1.207 17 H -0.200 1.200 18 H -0.213 1.213 19 C -0.060 4.060 20 C 0.366 3.634 21 F -0.159 7.159 22 F -0.159 7.159 23 F -0.169 7.169 24 H 0.124 0.876 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.228 0.772 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.430 1.673 -15.118 15.842 hybrid contribution 1.801 -1.079 0.799 2.246 sum 6.231 0.594 -14.319 15.628 Atomic orbital electron populations 1.21726 0.88271 1.04015 1.05109 1.22524 0.98961 0.83235 0.88857 1.86719 1.27226 1.23214 1.95647 1.22650 0.97228 0.99289 0.91138 1.61886 1.53965 1.05016 1.03878 1.22432 0.94831 0.91293 0.99419 1.21635 1.00034 0.97671 0.95970 1.21617 0.99269 0.97324 0.96368 1.18660 0.95440 0.92043 0.90184 0.94097 1.21101 1.28728 1.06995 0.98807 0.92914 1.24919 0.94761 0.95331 0.98624 1.69939 1.26858 1.27724 1.27983 0.86681 0.77477 0.81051 0.83193 1.20700 1.20028 1.21290 1.22399 0.98695 0.94308 0.90597 1.21807 0.75452 0.78332 0.87764 1.93180 1.88359 1.37614 1.96796 1.93179 1.88313 1.80659 1.53753 1.93156 1.30499 1.96381 1.96897 0.87566 0.91731 0.90238 0.77162 0.93749 0.89172 0.89636 0.96264 0.91960 0.93533 0.90534 0.95067 0.93010 0.96242 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 8.37 37.16 0.31 -1.36 16 2 C 0.11 1.31 0.67 -90.62 -0.06 1.25 16 3 O -0.52 -6.07 10.10 -35.23 -0.36 -6.43 16 4 C 0.03 0.36 4.09 -3.82 -0.02 0.34 16 5 N -0.52 -8.77 3.55 -234.68 -0.83 -9.61 16 6 C 0.05 0.78 5.21 -3.83 -0.02 0.76 16 7 C -0.12 -2.15 6.09 -26.65 -0.16 -2.31 16 8 C -0.11 -2.45 5.09 -26.61 -0.14 -2.58 16 9 C 0.06 1.34 2.14 -91.69 -0.20 1.14 16 10 H 0.04 1.10 8.12 -51.93 -0.42 0.68 16 11 C -0.52 -13.86 8.49 -34.44 -0.29 -14.16 16 12 H 0.05 1.40 7.75 -52.49 -0.41 0.99 16 13 C 0.07 1.78 5.28 -17.82 -0.09 1.69 16 14 N -0.89 -25.07 11.97 55.43 0.66 -24.41 16 15 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 C 0.07 1.33 4.64 -3.84 -0.02 1.31 16 20 C 0.42 4.98 2.38 37.16 0.09 5.07 16 21 F -0.18 -2.19 16.18 2.25 0.04 -2.15 16 22 F -0.18 -2.19 16.74 2.25 0.04 -2.15 16 23 F -0.19 -2.17 16.53 2.25 0.04 -2.13 16 24 H 0.11 1.52 7.45 -51.93 -0.39 1.13 16 25 H 0.06 0.74 7.80 -51.93 -0.41 0.34 16 26 H 0.08 0.93 7.80 -51.92 -0.41 0.53 16 27 H 0.38 3.25 8.65 45.56 0.39 3.64 16 28 H 0.04 0.57 7.81 -51.93 -0.41 0.16 16 29 H 0.09 1.21 7.26 -51.93 -0.38 0.84 16 30 H 0.09 1.24 5.24 -51.93 -0.27 0.97 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.96 6.78 -51.93 -0.35 1.61 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 1.22 7.92 -51.93 -0.41 0.80 16 LS Contribution 309.99 15.07 4.67 4.67 Total: -1.00 -27.93 309.99 -6.06 -33.99 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.70 Total: 1.11 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -0.59 Total: -8.85 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: -0.17 Total: -34.01 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.36 Total: -6.43 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.11 Total: -6.44 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.93 -6.06 -33.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397701646.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.554 kcal (2) G-P(sol) polarization free energy of solvation -27.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds