Wall clock time and date at job start Tue Mar 31 2020 06:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.46887 * 2 1 4 4 C 1.52994 * 109.47423 * 239.99980 * 2 1 3 5 5 N 1.46900 * 109.47305 * 53.90623 * 4 2 1 6 6 C 1.46853 * 111.00220 * 77.35545 * 5 4 2 7 7 C 1.53040 * 109.52451 * 185.84378 * 6 5 4 8 8 C 1.53116 * 109.27380 * 300.82092 * 7 6 5 9 9 C 1.53120 * 109.16565 * 57.65474 * 8 7 6 10 10 H 1.08993 * 109.49891 * 62.32643 * 9 8 7 11 11 C 1.50699 * 109.50305 * 182.40097 * 9 8 7 12 12 H 1.07999 * 119.99837 * 120.00167 * 11 9 8 13 13 C 1.37871 * 120.00468 * 300.00221 * 11 9 8 14 14 N 1.31516 * 119.99723 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 120.00104 * 179.72402 * 13 11 9 16 16 H 1.48498 * 109.46923 * 59.99971 * 15 13 11 17 17 H 1.48509 * 109.46873 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47206 * 299.99690 * 15 13 11 19 19 C 1.46847 * 111.00436 * 201.56743 * 5 4 2 20 20 C 1.53002 * 109.47114 * 119.99558 * 2 1 3 21 21 F 1.39899 * 109.46917 * 180.02562 * 20 2 1 22 22 F 1.39898 * 109.46959 * 300.00288 * 20 2 1 23 23 F 1.39898 * 109.46762 * 60.00616 * 20 2 1 24 24 H 1.08995 * 109.46705 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47095 * 299.99929 * 1 2 3 26 26 H 1.08998 * 109.47032 * 60.00203 * 1 2 3 27 27 H 0.96698 * 113.99845 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47326 * 293.90516 * 4 2 1 29 29 H 1.09000 * 109.47340 * 173.90431 * 4 2 1 30 30 H 1.08997 * 109.45811 * 65.82307 * 6 5 4 31 31 H 1.09000 * 109.45184 * 305.85346 * 6 5 4 32 32 H 1.08999 * 109.49963 * 180.88384 * 7 6 5 33 33 H 1.08999 * 109.50511 * 60.75548 * 7 6 5 34 34 H 1.09007 * 109.52453 * 297.74520 * 8 7 6 35 35 H 1.09004 * 109.57432 * 177.59336 * 8 7 6 36 36 H 0.97001 * 119.99951 * 180.02562 * 14 13 11 37 37 H 1.08996 * 109.46387 * 54.13806 * 19 5 4 38 38 H 1.09008 * 109.45887 * 294.17603 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.4341 -0.1189 -2.4441 6 6 2.0862 1.1532 -2.7806 7 6 1.3386 1.8210 -3.9371 8 6 1.3449 0.8862 -5.1498 9 6 0.7040 -0.4484 -4.7590 10 1 -0.3348 -0.2833 -4.4734 11 6 0.7593 -1.3951 -5.9302 12 1 1.2852 -2.3342 -5.8411 13 6 0.1386 -1.0624 -7.1156 14 7 -0.5022 0.0809 -7.2239 15 14 0.2138 -2.2326 -8.5697 16 1 -0.4031 -3.5299 -8.1935 17 1 -0.5272 -1.6464 -9.7155 18 1 1.6308 -2.4517 -8.9561 19 6 1.4698 -1.0503 -3.5788 20 6 2.0400 -0.7212 1.2493 21 9 3.4390 -0.7206 1.2496 22 9 1.5736 -0.0616 2.3915 23 9 1.5738 -2.0402 1.2493 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 2.9703 1.4237 0.0004 28 1 1.7686 -1.7755 -1.1963 29 1 3.1246 -0.6277 -1.3054 30 1 3.1185 0.9651 -3.0758 31 1 2.0711 1.8100 -1.9109 32 1 1.8322 2.7574 -4.1969 33 1 0.3100 2.0218 -3.6378 34 1 2.3718 0.7162 -5.4734 35 1 0.7770 1.3388 -5.9627 36 1 -0.9392 0.3148 -8.0577 37 1 1.0073 -1.9938 -3.2890 38 1 2.5051 -1.2280 -3.8703 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397701647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:08 Heat of formation + Delta-G solvation = -209.284092 kcal Electronic energy + Delta-G solvation = -23830.772488 eV Core-core repulsion = 19871.766115 eV Total energy + Delta-G solvation = -3959.006373 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -50.25857 -47.78072 -47.70378 -39.18458 -37.12018 -33.77993 -32.44020 -30.90414 -29.85701 -26.80297 -25.70247 -24.94654 -22.27302 -21.55844 -20.78706 -18.93953 -18.59391 -18.48301 -18.32924 -16.40711 -16.03984 -15.40295 -14.92339 -14.58048 -14.53574 -14.35580 -14.17618 -14.00888 -13.89306 -13.84783 -13.55888 -13.25289 -12.82617 -12.48237 -12.42724 -12.31295 -12.16917 -11.71146 -11.30959 -11.22042 -10.95420 -10.80267 -10.68053 -10.46751 -9.99505 -9.84737 -9.47698 -9.00566 -8.73209 -8.31169 -7.79449 -5.98926 -4.05530 2.52231 3.31097 3.36134 3.38169 3.50623 3.56216 3.84891 4.24460 4.38991 4.54746 4.65022 4.82800 5.31187 5.40939 5.53631 5.73000 5.77711 5.80349 5.84364 6.10142 6.26608 6.34024 6.37327 6.48379 6.72184 6.73711 6.91489 7.15613 7.19118 7.34686 7.56887 7.68454 7.75481 8.05308 8.15557 8.45347 8.98134 9.58964 11.06866 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.032321 B = 0.004351 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.089215 B = 6433.515115 C = 6805.000159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.108 3.892 3 O -0.522 6.522 4 C 0.026 3.974 5 N -0.523 5.523 6 C 0.047 3.953 7 C -0.115 4.115 8 C -0.112 4.112 9 C 0.057 3.943 10 H 0.035 0.965 11 C -0.517 4.517 12 H 0.052 0.948 13 C 0.064 3.936 14 N -0.888 5.888 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.278 1.278 19 C 0.066 3.934 20 C 0.422 3.578 21 F -0.188 7.188 22 F -0.178 7.178 23 F -0.178 7.178 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.106 0.894 27 H 0.380 0.620 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.019 0.981 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.028 0.972 35 H 0.090 0.910 36 H 0.260 0.740 37 H 0.060 0.940 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.175 1.108 15.197 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.064 3.936 3 O -0.328 6.328 4 C -0.103 4.103 5 N -0.247 5.247 6 C -0.080 4.080 7 C -0.153 4.153 8 C -0.150 4.150 9 C 0.038 3.962 10 H 0.053 0.947 11 C -0.556 4.556 12 H 0.071 0.929 13 C -0.137 4.137 14 N -0.526 5.526 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.204 1.204 19 C -0.060 4.060 20 C 0.366 3.634 21 F -0.169 7.169 22 F -0.159 7.159 23 F -0.160 7.160 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.124 0.876 27 H 0.228 0.772 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 3.957 1.430 15.179 15.752 hybrid contribution 1.758 -1.143 -0.734 2.222 sum 5.715 0.286 14.445 15.537 Atomic orbital electron populations 1.21721 0.88290 1.03996 1.05103 1.22523 0.98951 0.83247 0.88858 1.86720 1.27232 1.23199 1.95649 1.22647 0.97231 0.99272 0.91158 1.61886 1.53977 1.05015 1.03870 1.22442 0.94875 0.91231 0.99451 1.21645 0.99869 0.97766 0.96033 1.21672 0.99414 0.97184 0.96748 1.18645 0.95106 0.92361 0.90091 0.94690 1.21095 1.33783 1.03751 0.96927 0.92942 1.24919 0.95110 0.95188 0.98504 1.69878 1.34745 1.21666 1.26346 0.86694 0.78066 0.81240 0.82178 1.20304 1.21301 1.20407 1.22396 0.98770 0.94236 0.90619 1.21809 0.75456 0.78326 0.87765 1.93158 1.30492 1.96380 1.96897 1.93180 1.88312 1.80650 1.53762 1.93179 1.88363 1.37617 1.96796 0.90252 0.91733 0.87578 0.77157 0.89199 0.93750 0.96283 0.89702 0.93572 0.92090 0.95275 0.89123 0.92975 0.92158 0.96178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 8.37 37.16 0.31 -1.36 16 2 C 0.11 1.32 0.67 -90.62 -0.06 1.25 16 3 O -0.52 -6.11 10.10 -35.23 -0.36 -6.47 16 4 C 0.03 0.36 4.09 -3.83 -0.02 0.34 16 5 N -0.52 -8.82 3.55 -234.68 -0.83 -9.65 16 6 C 0.05 0.78 5.21 -3.83 -0.02 0.76 16 7 C -0.12 -2.18 6.09 -26.65 -0.16 -2.34 16 8 C -0.11 -2.58 5.02 -26.61 -0.13 -2.72 16 9 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.52 -13.85 8.56 -34.44 -0.29 -14.15 16 12 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 13 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 14 N -0.89 -24.94 11.35 55.43 0.63 -24.31 16 15 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 19 C 0.07 1.33 4.64 -3.84 -0.02 1.32 16 20 C 0.42 4.99 2.38 37.16 0.09 5.08 16 21 F -0.19 -2.17 16.53 2.25 0.04 -2.14 16 22 F -0.18 -2.19 16.74 2.25 0.04 -2.16 16 23 F -0.18 -2.19 16.18 2.25 0.04 -2.16 16 24 H 0.08 0.93 7.80 -51.93 -0.41 0.52 16 25 H 0.06 0.74 7.80 -51.93 -0.41 0.33 16 26 H 0.11 1.52 7.45 -51.93 -0.39 1.13 16 27 H 0.38 3.28 8.65 45.56 0.39 3.67 16 28 H 0.09 1.21 7.26 -51.93 -0.38 0.84 16 29 H 0.04 0.57 7.81 -51.93 -0.41 0.17 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 1.24 5.24 -51.93 -0.27 0.97 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 2.36 6.15 -51.93 -0.32 2.04 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.06 1.19 7.92 -51.93 -0.41 0.78 16 38 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 LS Contribution 308.90 15.07 4.66 4.66 Total: -1.00 -27.79 308.90 -6.09 -33.87 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -4.67 Total: 1.39 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -0.61 Total: -8.99 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: -0.20 Total: -33.96 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.36 Total: -6.47 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 0.11 Total: -6.45 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.79 -6.09 -33.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397701647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.411 kcal (2) G-P(sol) polarization free energy of solvation -27.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds