Wall clock time and date at job start Tue Mar 31 2020 06:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42903 * 109.46948 * 2 1 4 4 C 1.53005 * 109.47070 * 240.00234 * 2 1 3 5 5 N 1.46897 * 109.47431 * 53.64117 * 4 2 1 6 6 C 1.46827 * 110.98558 * 200.05656 * 5 4 2 7 7 C 1.53036 * 109.51614 * 174.15708 * 6 5 4 8 8 C 1.53123 * 109.27948 * 59.17460 * 7 6 5 9 9 C 1.53110 * 109.16203 * 302.34825 * 8 7 6 10 10 H 1.08997 * 109.50605 * 297.71018 * 9 8 7 11 11 C 1.50707 * 109.50305 * 177.59403 * 9 8 7 12 12 H 1.07996 * 119.99672 * 275.47103 * 11 9 8 13 13 C 1.37874 * 119.99837 * 95.46797 * 11 9 8 14 14 N 1.31515 * 119.99807 * 186.94581 * 13 11 9 15 15 Si 1.86796 * 120.00410 * 6.94730 * 13 11 9 16 16 H 1.48506 * 109.47249 * 87.07074 * 15 13 11 17 17 H 1.48499 * 109.47523 * 207.07693 * 15 13 11 18 18 H 1.48503 * 109.47090 * 327.07833 * 15 13 11 19 19 C 1.46846 * 110.99854 * 75.83938 * 5 4 2 20 20 C 1.52999 * 109.47300 * 119.99857 * 2 1 3 21 21 F 1.39900 * 109.47055 * 179.97438 * 20 2 1 22 22 F 1.39895 * 109.47166 * 300.00118 * 20 2 1 23 23 F 1.39899 * 109.46725 * 60.00105 * 20 2 1 24 24 H 1.09001 * 109.47071 * 174.04132 * 1 2 3 25 25 H 1.08999 * 109.47419 * 294.04003 * 1 2 3 26 26 H 1.09006 * 109.47374 * 54.04309 * 1 2 3 27 27 H 0.96706 * 113.99860 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.46798 * 293.63849 * 4 2 1 29 29 H 1.09004 * 109.46972 * 173.64247 * 4 2 1 30 30 H 1.08993 * 109.46267 * 54.14110 * 6 5 4 31 31 H 1.08997 * 109.45359 * 294.16064 * 6 5 4 32 32 H 1.09002 * 109.50398 * 299.23651 * 7 6 5 33 33 H 1.08998 * 109.50378 * 179.12014 * 7 6 5 34 34 H 1.08997 * 109.52142 * 182.43898 * 8 7 6 35 35 H 1.09005 * 109.56738 * 62.28898 * 8 7 6 36 36 H 0.97005 * 120.00218 * 180.02562 * 14 13 11 37 37 H 1.09005 * 109.45991 * 65.82591 * 19 5 4 38 38 H 1.08994 * 109.46880 * 305.84764 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.4291 -0.1230 -2.4438 6 6 1.4981 -1.0426 -3.5863 7 6 0.7272 -0.4491 -4.7677 8 6 1.3375 0.9049 -5.1405 9 6 1.2973 1.8277 -3.9194 10 1 0.2614 1.9997 -3.6272 11 6 1.9496 3.1426 -4.2608 12 1 3.0217 3.2492 -4.1854 13 6 1.1778 4.2095 -4.6693 14 7 1.7534 5.3118 -5.0974 15 14 -0.6855 4.0895 -4.6148 16 1 -1.1686 4.4948 -3.2702 17 1 -1.2698 4.9883 -5.6424 18 1 -1.0996 2.6898 -4.8882 19 6 2.0517 1.1682 -2.7627 20 6 2.0400 -0.7212 1.2492 21 9 3.4390 -0.7217 1.2489 22 9 1.5737 -0.0617 2.3915 23 9 1.5736 -2.0402 1.2492 24 1 -0.3633 -1.0221 -0.1067 25 1 -0.3634 0.4186 0.9385 26 1 -0.3634 0.6034 -0.8319 27 1 2.9703 1.4237 -0.0004 28 1 1.7725 -1.7764 -1.1942 29 1 3.1240 -0.6237 -1.3080 30 1 1.0571 -2.0000 -3.3091 31 1 2.5399 -1.1911 -3.8704 32 1 -0.3177 -0.3129 -4.4888 33 1 0.7917 -1.1247 -5.6206 34 1 0.7646 1.3511 -5.9534 35 1 2.3709 0.7647 -5.4575 36 1 1.2104 6.0626 -5.3845 37 1 3.0909 1.0090 -3.0506 38 1 2.0126 1.8163 -1.8872 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397701650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:21 Heat of formation + Delta-G solvation = -208.039346 kcal Electronic energy + Delta-G solvation = -24098.248741 eV Core-core repulsion = 20139.296345 eV Total energy + Delta-G solvation = -3958.952397 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.24547 -47.76566 -47.69090 -39.24846 -37.19381 -33.78794 -32.40407 -31.18704 -30.26286 -26.85933 -25.81239 -25.02797 -22.55001 -21.30032 -20.84261 -18.89140 -18.71639 -18.48236 -18.34081 -16.85831 -16.07683 -15.40559 -15.25955 -14.55841 -14.46954 -14.16734 -14.13340 -14.01426 -13.89135 -13.86266 -13.63823 -13.39411 -12.91899 -12.73939 -12.50686 -12.43277 -12.14667 -11.91667 -11.57874 -11.23678 -11.15390 -10.96094 -10.65766 -10.51688 -10.22825 -9.72529 -9.36184 -9.25633 -8.92262 -8.45697 -7.93192 -6.05838 -4.04575 2.53298 3.33687 3.41432 3.44653 3.50703 3.62693 3.86321 4.28856 4.41619 4.46228 4.63592 4.80146 5.24133 5.29144 5.43178 5.48750 5.60012 5.73558 5.77465 5.81806 5.99323 6.14300 6.32182 6.35591 6.39568 6.46112 6.75773 6.83104 6.89054 7.28009 7.31945 7.45369 7.51825 7.59307 7.87099 8.54788 8.99080 9.58521 11.07420 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.005623 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.582634 B = 4978.698341 C = 5432.070750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.107 3.893 3 O -0.515 6.515 4 C 0.028 3.972 5 N -0.529 5.529 6 C 0.062 3.938 7 C -0.119 4.119 8 C -0.114 4.114 9 C 0.022 3.978 10 H 0.040 0.960 11 C -0.511 4.511 12 H 0.070 0.930 13 C 0.072 3.928 14 N -0.901 5.901 15 Si 0.878 3.122 16 H -0.276 1.276 17 H -0.292 1.292 18 H -0.263 1.263 19 C 0.054 3.946 20 C 0.422 3.578 21 F -0.187 7.187 22 F -0.176 7.176 23 F -0.181 7.181 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.383 0.617 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.028 0.972 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.263 0.737 37 H 0.020 0.980 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.900 -14.523 10.081 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.063 3.937 3 O -0.321 6.321 4 C -0.102 4.102 5 N -0.254 5.254 6 C -0.066 4.066 7 C -0.157 4.157 8 C -0.152 4.152 9 C 0.002 3.998 10 H 0.058 0.942 11 C -0.549 4.549 12 H 0.088 0.912 13 C -0.129 4.129 14 N -0.539 5.539 15 Si 0.705 3.295 16 H -0.201 1.201 17 H -0.219 1.219 18 H -0.187 1.187 19 C -0.072 4.072 20 C 0.367 3.633 21 F -0.168 7.168 22 F -0.157 7.157 23 F -0.163 7.163 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.122 0.878 27 H 0.232 0.768 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.040 -14.127 10.126 17.501 hybrid contribution 0.747 -0.390 0.061 0.845 sum -1.293 -14.517 10.187 17.782 Atomic orbital electron populations 1.21693 0.88544 1.03993 1.04722 1.22446 0.98844 0.83799 0.88618 1.86802 1.27584 1.22284 1.95454 1.22630 0.97532 0.98739 0.91254 1.61965 1.56076 1.04801 1.02512 1.22037 0.98453 0.94765 0.91304 1.21671 1.00058 0.98218 0.95749 1.21890 0.99333 0.93568 1.00413 1.19152 0.96679 0.93991 0.89946 0.94177 1.20928 0.95371 0.93676 1.44908 0.91236 1.25044 0.98434 0.95227 0.94229 1.69922 1.35776 1.04866 1.43360 0.86838 0.86438 0.78192 0.77989 1.20146 1.21895 1.18733 1.22741 0.95142 0.87811 1.01511 1.21822 0.75520 0.78106 0.87893 1.93165 1.30396 1.96357 1.96897 1.93185 1.88289 1.80628 1.53645 1.93161 1.88426 1.37835 1.96833 0.90443 0.91700 0.87830 0.76782 0.89603 0.93474 0.91968 0.95404 0.91919 0.92860 0.93013 0.93318 0.92732 0.96203 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 8.26 37.15 0.31 -1.36 16 2 C 0.11 1.36 0.66 -90.62 -0.06 1.30 16 3 O -0.52 -7.25 10.01 -35.23 -0.35 -7.60 16 4 C 0.03 0.36 4.08 -3.82 -0.02 0.34 16 5 N -0.53 -8.34 3.67 -234.69 -0.86 -9.20 16 6 C 0.06 0.92 5.43 -3.85 -0.02 0.90 16 7 C -0.12 -1.95 6.09 -26.65 -0.16 -2.11 16 8 C -0.11 -2.32 5.27 -26.61 -0.14 -2.46 16 9 C 0.02 0.49 1.96 -91.69 -0.18 0.31 16 10 H 0.04 0.95 5.14 -51.93 -0.27 0.68 16 11 C -0.51 -13.93 8.86 -34.44 -0.31 -14.24 16 12 H 0.07 2.07 8.06 -52.49 -0.42 1.64 16 13 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 14 N -0.90 -27.30 13.96 55.43 0.77 -26.52 16 15 Si 0.88 21.53 27.13 -169.99 -4.61 16.92 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.26 -6.16 6.63 56.52 0.37 -5.78 16 19 C 0.05 1.04 4.47 -3.83 -0.02 1.02 16 20 C 0.42 5.08 2.38 37.16 0.09 5.17 16 21 F -0.19 -2.24 16.54 2.25 0.04 -2.20 16 22 F -0.18 -2.28 16.64 2.25 0.04 -2.25 16 23 F -0.18 -2.12 16.28 2.25 0.04 -2.08 16 24 H 0.08 0.84 7.97 -51.93 -0.41 0.43 16 25 H 0.06 0.78 7.64 -51.93 -0.40 0.38 16 26 H 0.10 1.52 7.66 -51.93 -0.40 1.12 16 27 H 0.38 4.31 8.67 45.56 0.40 4.70 16 28 H 0.09 0.98 7.28 -51.93 -0.38 0.60 16 29 H 0.05 0.59 7.84 -51.93 -0.41 0.19 16 30 H 0.06 0.78 7.93 -51.93 -0.41 0.37 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.10 1.90 5.18 -51.93 -0.27 1.64 16 LS Contribution 308.52 15.07 4.65 4.65 Total: -1.00 -29.68 308.52 -5.56 -35.24 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.67 Total: 2.22 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.60 Total: -9.18 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.09 Total: -35.72 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.35 Total: -7.60 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.11 Total: -6.53 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.61 Total: 16.92 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.68 -5.56 -35.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397701650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.794 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds