Wall clock time and date at job start Tue Mar 31 2020 05:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 115.56238 * 2 1 4 4 C 1.53002 * 117.50082 * 214.30606 * 2 1 3 5 5 H 1.08999 * 117.50028 * 145.02383 * 4 2 1 6 6 C 1.50694 * 117.51579 * 359.97438 * 4 2 1 7 7 O 1.20834 * 119.99806 * 290.71085 * 6 4 2 8 8 O 1.34229 * 120.00097 * 110.71620 * 6 4 2 9 9 C 1.52999 * 117.49854 * 145.68095 * 2 1 3 10 10 H 1.09005 * 117.51533 * 0.02562 * 9 2 1 11 11 C 1.50698 * 117.50174 * 214.97920 * 9 2 1 12 12 O 1.21274 * 119.99880 * 359.97438 * 11 9 2 13 13 N 1.34783 * 119.99924 * 179.97438 * 11 9 2 14 14 C 1.46493 * 119.99684 * 180.02562 * 13 11 9 15 15 C 1.53000 * 109.46873 * 183.59010 * 14 13 11 16 16 C 1.50697 * 115.55414 * 304.84134 * 15 14 13 17 17 H 1.07997 * 120.00079 * 95.20724 * 16 15 14 18 18 C 1.37885 * 119.99783 * 275.20672 * 16 15 14 19 19 N 1.31519 * 119.99724 * 7.31751 * 18 16 15 20 20 Si 1.86800 * 119.99838 * 187.31031 * 18 16 15 21 21 H 1.48501 * 109.46981 * 60.00716 * 20 18 16 22 22 H 1.48497 * 109.47205 * 300.00441 * 20 18 16 23 23 H 1.48504 * 109.46855 * 180.02562 * 20 18 16 24 24 C 1.53001 * 117.49739 * 90.50917 * 15 14 13 25 25 C 1.53009 * 117.49835 * 159.16624 * 15 14 13 26 26 H 1.09001 * 109.47187 * 281.01889 * 1 2 3 27 27 H 1.09006 * 109.46609 * 41.01890 * 1 2 3 28 28 H 1.08997 * 109.47186 * 161.01202 * 1 2 3 29 29 H 1.09007 * 109.47133 * 205.68490 * 3 2 1 30 30 H 1.09003 * 109.47128 * 325.68256 * 3 2 1 31 31 H 1.09002 * 109.47266 * 85.68428 * 3 2 1 32 32 H 0.96701 * 117.00221 * 180.02562 * 8 6 4 33 33 H 0.97005 * 119.99708 * 0.02562 * 13 11 9 34 34 H 1.09005 * 109.47121 * 63.59792 * 14 13 11 35 35 H 1.09000 * 109.47776 * 303.59061 * 14 13 11 36 36 H 0.96990 * 119.99986 * 5.62248 * 19 18 16 37 37 H 1.08999 * 117.50381 * 214.99957 * 24 15 14 38 38 H 1.08998 * 117.50100 * 0.02562 * 24 15 14 39 39 H 1.09000 * 117.49610 * 359.97438 * 25 15 14 40 40 H 1.09003 * 117.49358 * 144.97644 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2365 -1.1210 -0.7649 5 1 3.1716 -0.8753 -1.2681 6 6 1.3725 -2.1413 -1.4603 7 8 0.7233 -2.9266 -0.8107 8 8 1.3242 -2.1777 -2.8012 9 6 2.2364 -1.1209 0.7652 10 1 1.6114 -1.8587 1.2683 11 6 3.5292 -0.7810 1.4609 12 8 3.9720 0.3464 1.4008 13 7 4.1934 -1.7300 2.1501 14 6 5.4498 -1.3994 2.8269 15 6 6.0395 -2.6644 3.4539 16 6 5.1277 -3.4095 4.3943 17 1 4.5383 -4.2385 4.0314 18 6 5.0460 -3.0329 5.7182 19 7 5.6495 -1.9389 6.1291 20 14 4.0779 -4.0762 6.9280 21 1 4.6585 -5.4421 6.9789 22 1 2.6614 -4.1564 6.4897 23 1 4.1439 -3.4592 8.2772 24 6 7.0040 -3.4916 2.6016 25 6 7.5358 -2.6629 3.7737 26 1 -0.3634 0.1964 1.0087 27 1 -0.3633 0.7754 -0.6745 28 1 -0.3633 -0.9717 -0.3344 29 1 3.1825 1.3084 -0.4454 30 1 1.5812 2.0743 -0.5794 31 1 2.2772 1.7414 1.0248 32 1 0.7556 -2.8494 -3.2019 33 1 3.8393 -2.6319 2.1978 34 1 5.2593 -0.6622 3.6070 35 1 6.1551 -0.9895 2.1040 36 1 6.0829 -1.3542 5.4880 37 1 6.9791 -4.5747 2.7212 38 1 7.2188 -3.1344 1.5945 39 1 8.1000 -1.7608 3.5370 40 1 7.8605 -3.2005 4.6645 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404184182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:26 Heat of formation + Delta-G solvation = -92.437129 kcal Electronic energy + Delta-G solvation = -22404.887310 eV Core-core repulsion = 18992.804542 eV Total energy + Delta-G solvation = -3412.082768 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03795 -39.48123 -37.60923 -36.67038 -36.05702 -33.45172 -31.97319 -29.90759 -27.61117 -27.11253 -25.31480 -24.75437 -21.90956 -21.32229 -19.88282 -19.71575 -19.05953 -18.29087 -17.20933 -16.68321 -15.97698 -15.96694 -15.28810 -14.65328 -14.08339 -14.02327 -13.78754 -13.76263 -13.35855 -13.11582 -12.77570 -12.62242 -12.45245 -12.38834 -11.95904 -11.78124 -11.72944 -11.48064 -11.00686 -10.81630 -10.74889 -10.51351 -10.41200 -10.16153 -10.06523 -9.73727 -9.24404 -8.74164 -8.56730 -8.42913 -8.23559 -6.42143 -4.20035 1.84893 2.51725 2.98144 3.39414 3.40184 3.58983 3.59961 3.73753 4.43295 4.44877 4.46912 4.74224 4.92545 5.03471 5.10940 5.22836 5.36862 5.43407 5.54719 5.70874 5.77404 5.82857 5.90179 5.95417 6.09652 6.10986 6.20927 6.27250 6.32291 6.48746 6.51694 6.61533 6.82178 7.06669 7.14469 7.23462 7.70101 8.12828 8.16905 8.30285 8.72938 8.77420 9.55993 10.95241 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.004547 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.711353 B = 6156.307481 C = 6337.568804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.055 4.055 3 C -0.103 4.103 4 C -0.146 4.146 5 H 0.139 0.861 6 C 0.514 3.486 7 O -0.509 6.509 8 O -0.511 6.511 9 C -0.145 4.145 10 H 0.137 0.863 11 C 0.534 3.466 12 O -0.548 6.548 13 N -0.690 5.690 14 C 0.159 3.841 15 C 0.003 3.997 16 C -0.578 4.578 17 H 0.053 0.947 18 C 0.032 3.968 19 N -0.897 5.897 20 Si 1.063 2.937 21 H -0.288 1.288 22 H -0.287 1.287 23 H -0.282 1.282 24 C -0.194 4.194 25 C -0.170 4.170 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.411 0.589 33 H 0.406 0.594 34 H 0.063 0.937 35 H 0.042 0.958 36 H 0.275 0.725 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.211 1.908 -14.556 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.056 4.056 3 C -0.160 4.160 4 C -0.166 4.166 5 H 0.157 0.843 6 C 0.356 3.644 7 O -0.397 6.397 8 O -0.323 6.323 9 C -0.167 4.167 10 H 0.155 0.845 11 C 0.318 3.682 12 O -0.428 6.428 13 N -0.339 5.339 14 C 0.035 3.965 15 C 0.002 3.998 16 C -0.615 4.615 17 H 0.071 0.929 18 C -0.175 4.175 19 N -0.530 5.530 20 Si 0.891 3.109 21 H -0.214 1.214 22 H -0.214 1.214 23 H -0.208 1.208 24 C -0.231 4.231 25 C -0.208 4.208 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.269 0.731 33 H 0.241 0.759 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.181 2.645 -12.595 15.250 hybrid contribution 0.003 -1.038 -1.870 2.139 sum -8.178 1.607 -14.465 16.694 Atomic orbital electron populations 1.21550 0.91044 1.02642 1.03291 1.21691 0.95012 0.91513 0.97408 1.21409 0.99761 0.91365 1.03472 1.21973 1.01913 0.99774 0.92892 0.84304 1.22218 0.79373 0.82541 0.80234 1.90740 1.42468 1.39973 1.66566 1.84512 1.66609 1.58741 1.22426 1.22592 0.98998 1.03811 0.91250 0.84531 1.19330 0.84101 0.85204 0.79528 1.90661 1.68434 1.20724 1.62935 1.45874 1.24390 1.13268 1.50324 1.21026 0.83415 0.97848 0.94205 1.19326 0.89363 0.93585 0.97477 1.21171 1.27568 1.17518 0.95291 0.92857 1.25754 0.96706 0.97525 0.97496 1.70729 1.32130 1.11307 1.38840 0.83636 0.75784 0.75263 0.76226 1.21428 1.21391 1.20763 1.22918 1.08320 0.98012 0.93861 1.22731 0.98684 1.00572 0.98807 0.90795 0.91279 0.91943 0.91113 0.93040 0.90350 0.73069 0.75910 0.91906 0.93986 0.91372 0.90039 0.91438 0.91352 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 9.58 37.16 0.36 -1.00 16 2 C -0.06 -0.69 2.70 -154.51 -0.42 -1.11 16 3 C -0.10 -1.30 8.09 37.16 0.30 -1.00 16 4 C -0.15 -1.83 5.65 -91.77 -0.52 -2.35 16 5 H 0.14 1.68 8.05 -51.93 -0.42 1.26 16 6 C 0.51 6.18 6.82 36.00 0.25 6.43 16 7 O -0.51 -7.38 15.99 -18.76 -0.30 -7.68 16 8 O -0.51 -4.64 13.42 -39.25 -0.53 -5.17 16 9 C -0.15 -2.12 5.42 -91.77 -0.50 -2.62 16 10 H 0.14 2.00 7.67 -51.93 -0.40 1.60 16 11 C 0.53 9.64 7.59 -10.98 -0.08 9.56 16 12 O -0.55 -11.00 13.10 5.56 0.07 -10.92 16 13 N -0.69 -13.45 5.41 -60.30 -0.33 -13.78 16 14 C 0.16 3.47 5.48 -4.05 -0.02 3.45 16 15 C 0.00 0.08 1.06 -155.66 -0.16 -0.09 16 16 C -0.58 -14.86 8.11 -34.44 -0.28 -15.14 16 17 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 18 C 0.03 0.86 5.38 -17.81 -0.10 0.77 16 19 N -0.90 -25.56 13.46 55.43 0.75 -24.81 16 20 Si 1.06 24.07 29.91 -169.99 -5.08 18.98 16 21 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C -0.19 -4.01 9.93 -26.69 -0.26 -4.27 16 25 C -0.17 -3.76 8.99 -26.69 -0.24 -4.00 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.61 8.04 -51.93 -0.42 0.19 16 28 H 0.06 0.70 5.79 -51.93 -0.30 0.40 16 29 H 0.07 0.97 7.01 -51.93 -0.36 0.60 16 30 H 0.05 0.52 8.00 -51.93 -0.42 0.11 16 31 H 0.08 1.13 7.26 -51.93 -0.38 0.76 16 32 H 0.41 1.86 9.10 45.56 0.41 2.27 16 33 H 0.41 7.68 7.99 -40.82 -0.33 7.36 16 34 H 0.06 1.54 7.42 -51.93 -0.39 1.16 16 35 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 36 H 0.28 7.82 6.12 -40.82 -0.25 7.57 16 37 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 40 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 336.49 15.07 5.07 5.07 Total: -1.00 -30.79 336.49 -7.01 -37.79 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -4.98 Total: 11.90 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -1.68 Total: -11.38 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.42 Total: -38.59 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.75 Total: -23.77 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.08 Total: 18.98 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.79 -7.01 -37.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404184182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.646 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds