Wall clock time and date at job start Tue Mar 31 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46814 * 2 1 4 4 H 1.09002 * 109.47255 * 55.00277 * 3 2 1 5 5 C 1.50703 * 109.46808 * 174.99830 * 3 2 1 6 6 H 1.07999 * 119.99721 * 119.99593 * 5 3 2 7 7 C 1.37871 * 120.00190 * 299.99920 * 5 3 2 8 8 N 1.31516 * 119.99990 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00233 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46977 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47065 * 120.00169 * 9 7 5 12 12 H 1.48498 * 109.47472 * 240.00194 * 9 7 5 13 13 N 1.46493 * 109.47314 * 294.99657 * 3 2 1 14 14 C 1.31764 * 120.00156 * 119.99890 * 13 3 2 15 15 N 1.34735 * 127.89601 * 180.30721 * 14 13 3 16 16 C 1.28444 * 116.89824 * 180.17408 * 15 14 13 17 17 C 1.50704 * 120.46998 * 179.76427 * 16 15 14 18 18 C 1.54892 * 110.59841 * 148.04242 * 17 16 15 19 19 C 1.54888 * 102.74611 * 156.67350 * 18 17 16 20 20 C 1.54265 * 104.19721 * 322.05788 * 19 18 17 21 21 C 1.53873 * 106.59997 * 23.61451 * 20 19 18 22 22 N 1.33783 * 119.05651 * 359.49271 * 16 15 14 23 23 H 0.96998 * 127.11913 * 180.29074 * 22 16 15 24 24 S 1.70099 * 105.76365 * 0.27425 * 22 16 15 25 25 H 1.09006 * 109.47478 * 60.00351 * 1 2 3 26 26 H 1.08997 * 109.47187 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47379 * 299.99979 * 1 2 3 28 28 H 1.09001 * 109.47097 * 239.99576 * 2 1 3 29 29 H 1.08999 * 109.46789 * 120.00140 * 2 1 3 30 30 H 0.97004 * 119.99888 * 179.97438 * 8 7 5 31 31 H 1.09002 * 110.43639 * 25.42534 * 17 16 15 32 32 H 1.08992 * 110.75663 * 274.99212 * 18 17 16 33 33 H 1.09000 * 110.75339 * 38.36236 * 18 17 16 34 34 H 1.09007 * 110.48520 * 203.37936 * 19 18 17 35 35 H 1.08996 * 110.48377 * 80.74349 * 19 18 17 36 36 H 1.08993 * 110.03585 * 264.31946 * 20 19 18 37 37 H 1.09006 * 110.07186 * 142.91875 * 20 19 18 38 38 H 1.09002 * 110.03017 * 240.71676 * 21 20 19 39 39 H 1.08996 * 110.07624 * 119.30418 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1471 1.8888 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3367 2.1729 9 14 6.0049 0.8801 1.3812 10 1 6.5987 1.5453 0.1937 11 1 6.3999 1.6157 2.6093 12 1 6.4961 -0.5189 1.4627 13 7 1.6524 2.0975 -1.2518 14 6 0.8887 3.1709 -1.2248 15 7 0.4355 3.8906 -2.2698 16 6 -0.2985 4.9092 -1.9990 17 6 -0.8443 5.7738 -3.1062 18 6 -2.2216 6.3614 -2.7102 19 6 -2.3267 7.6201 -3.6067 20 6 -0.8923 8.1872 -3.6323 21 6 0.0503 7.0133 -3.3142 22 7 -0.5762 5.1887 -0.7205 23 1 -1.1173 5.9206 -0.3855 24 16 0.2157 3.9944 0.1960 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8293 -0.0618 2.9495 31 1 -0.9250 5.2022 -4.0308 32 1 -3.0218 5.6572 -2.9377 33 1 -2.2355 6.6361 -1.6555 34 1 -3.0152 8.3434 -3.1696 35 1 -2.6469 7.3466 -4.6121 36 1 -0.7855 8.9669 -2.8782 37 1 -0.6668 8.5900 -4.6198 38 1 0.6144 7.2232 -2.4054 39 1 0.7331 6.8455 -4.1470 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420614501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:33 Heat of formation + Delta-G solvation = 43.098666 kcal Electronic energy + Delta-G solvation = -19722.226983 eV Core-core repulsion = 16791.067111 eV Total energy + Delta-G solvation = -2931.159873 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.23059 -37.60282 -35.93238 -33.26441 -31.80690 -30.59356 -29.55032 -29.00588 -26.93208 -23.92986 -22.69825 -20.80311 -20.51904 -20.24128 -19.47479 -18.41801 -16.91056 -16.32037 -16.05543 -15.12649 -15.02696 -14.71025 -14.12159 -13.78203 -13.68498 -13.07842 -12.64374 -12.15392 -12.13001 -11.64254 -11.52422 -11.44267 -11.33148 -11.27420 -11.15127 -11.02641 -10.88800 -10.71398 -10.66648 -10.34613 -10.03943 -9.89149 -9.68322 -9.32733 -8.80588 -8.51868 -7.95561 -6.78172 -6.06632 -4.14120 1.25325 1.57993 2.32377 3.28793 3.35847 3.41911 3.57045 3.83985 4.21903 4.33271 4.39806 4.59225 4.68505 5.05016 5.15107 5.17866 5.19236 5.24548 5.26444 5.33429 5.53083 5.63066 5.78392 5.85253 6.00078 6.02855 6.22179 6.29736 6.45387 6.52930 6.94481 6.95891 7.09140 7.24781 7.48144 7.74990 7.95348 8.03615 8.27749 8.72736 8.98258 9.50795 10.97797 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.027435 B = 0.004190 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.346478 B = 6680.258701 C = 7152.750512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C 0.214 3.786 4 H 0.019 0.981 5 C -0.504 4.504 6 H 0.065 0.935 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.903 3.097 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.440 5.440 14 C 0.317 3.683 15 N -0.524 5.524 16 C 0.392 3.608 17 C -0.031 4.031 18 C -0.120 4.120 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.115 4.115 22 N -0.699 5.699 23 H 0.436 0.564 24 S 0.048 5.952 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.263 0.737 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.645 14.509 -7.619 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C 0.105 3.895 4 H 0.036 0.964 5 C -0.543 4.543 6 H 0.083 0.917 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.207 1.207 13 N -0.162 5.162 14 C -0.074 4.074 15 N -0.255 5.255 16 C 0.108 3.892 17 C -0.054 4.054 18 C -0.159 4.159 19 C -0.160 4.160 20 C -0.162 4.162 21 C -0.154 4.154 22 N -0.431 5.431 23 H 0.279 0.721 24 S 0.168 5.832 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.122 0.878 30 H 0.073 0.927 31 H 0.131 0.869 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.803 13.246 -7.422 19.232 hybrid contribution 0.327 0.890 0.609 1.127 sum -11.476 14.136 -6.812 19.441 Atomic orbital electron populations 1.21848 0.99041 0.99607 1.00098 1.21609 0.91829 0.98016 1.03252 1.19630 0.96310 0.91450 0.82149 0.96351 1.21063 0.89605 1.38061 1.05608 0.91685 1.24927 0.98842 0.94897 0.95302 1.69888 1.35049 1.38331 1.09519 0.86344 0.84666 0.77837 0.78082 1.19595 1.20882 1.20746 1.71931 1.08345 1.04166 1.31801 1.26129 0.99019 0.96801 0.85447 1.67818 1.19978 1.08734 1.28928 1.22694 0.89732 0.90920 0.85901 1.21036 0.94804 0.94357 0.95209 1.22626 0.95906 0.97560 0.99808 1.22346 0.96942 0.96615 1.00102 1.22153 0.94447 0.97591 1.01978 1.22176 0.97768 0.92574 1.02855 1.47036 1.55102 1.33844 1.07097 0.72051 1.86382 1.58117 1.25194 1.13546 0.94414 0.94277 0.93820 0.93602 0.87785 0.92692 0.86873 0.90372 0.91480 0.91247 0.91039 0.91612 0.91358 0.91337 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.80 37.16 0.36 -2.89 16 2 C -0.11 -2.76 5.45 -26.73 -0.15 -2.91 16 3 C 0.21 5.81 2.33 -69.09 -0.16 5.65 16 4 H 0.02 0.54 6.46 -51.93 -0.34 0.20 16 5 C -0.50 -14.71 8.84 -34.44 -0.30 -15.01 16 6 H 0.06 1.95 7.81 -52.49 -0.41 1.54 16 7 C 0.06 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -25.40 11.29 55.43 0.63 -24.78 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.77 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 N -0.44 -11.37 9.73 -55.66 -0.54 -11.92 16 14 C 0.32 7.21 8.61 -89.59 -0.77 6.44 16 15 N -0.52 -10.32 10.58 -11.66 -0.12 -10.45 16 16 C 0.39 5.81 6.39 -158.23 -1.01 4.80 16 17 C -0.03 -0.31 3.31 -90.11 -0.30 -0.61 16 18 C -0.12 -0.88 6.23 -24.74 -0.15 -1.03 16 19 C -0.12 -0.72 6.83 -25.07 -0.17 -0.89 16 20 C -0.12 -0.81 6.80 -25.61 -0.17 -0.98 16 21 C -0.11 -1.03 6.36 -25.61 -0.16 -1.19 16 22 N -0.70 -9.64 6.45 31.49 0.20 -9.43 16 23 H 0.44 4.31 7.20 -40.82 -0.29 4.02 16 24 S 0.05 0.92 22.44 -107.50 -2.41 -1.49 16 25 H 0.04 0.82 7.75 -51.93 -0.40 0.42 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.10 2.84 5.95 -51.93 -0.31 2.53 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.44 6.22 -51.93 -0.32 0.12 16 34 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.69 7.83 -51.93 -0.41 0.28 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 326.55 15.07 4.92 4.92 Total: -1.00 -32.34 326.55 -11.28 -43.62 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.84 Total: -0.29 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -3.09 Total: -6.96 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.16 Total: -56.58 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.41 Total: -1.49 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.34 -11.28 -43.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420614501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.719 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds