Wall clock time and date at job start Tue Mar 31 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46814 * 2 1 4 4 H 1.09002 * 109.47255 * 55.00277 * 3 2 1 5 5 C 1.50703 * 109.46808 * 174.99830 * 3 2 1 6 6 H 1.07999 * 119.99721 * 119.99593 * 5 3 2 7 7 C 1.37871 * 120.00190 * 299.99920 * 5 3 2 8 8 N 1.31516 * 119.99990 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00233 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46977 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47065 * 120.00169 * 9 7 5 12 12 H 1.48498 * 109.47472 * 240.00194 * 9 7 5 13 13 N 1.46493 * 109.47314 * 294.99657 * 3 2 1 14 14 C 1.31764 * 120.00156 * 119.99890 * 13 3 2 15 15 N 1.34735 * 127.89601 * 180.30721 * 14 13 3 16 16 C 1.28444 * 116.89824 * 180.17408 * 15 14 13 17 17 C 1.50704 * 120.46998 * 179.76427 * 16 15 14 18 18 C 1.54892 * 110.59841 * 148.04242 * 17 16 15 19 19 C 1.54888 * 102.74611 * 156.67350 * 18 17 16 20 20 C 1.54265 * 104.19721 * 322.05788 * 19 18 17 21 21 C 1.53873 * 106.59997 * 23.61451 * 20 19 18 22 22 N 1.33783 * 119.05651 * 359.49271 * 16 15 14 23 23 H 0.96998 * 127.11913 * 180.29074 * 22 16 15 24 24 S 1.70099 * 105.76365 * 0.27425 * 22 16 15 25 25 H 1.09006 * 109.47478 * 60.00351 * 1 2 3 26 26 H 1.08997 * 109.47187 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47379 * 299.99979 * 1 2 3 28 28 H 1.09001 * 109.47097 * 239.99576 * 2 1 3 29 29 H 1.08999 * 109.46789 * 120.00140 * 2 1 3 30 30 H 0.97004 * 119.99888 * 179.97438 * 8 7 5 31 31 H 1.09002 * 110.43639 * 25.42534 * 17 16 15 32 32 H 1.08992 * 110.75663 * 274.99212 * 18 17 16 33 33 H 1.09000 * 110.75339 * 38.36236 * 18 17 16 34 34 H 1.09007 * 110.48520 * 203.37936 * 19 18 17 35 35 H 1.08996 * 110.48377 * 80.74349 * 19 18 17 36 36 H 1.08993 * 110.03585 * 264.31946 * 20 19 18 37 37 H 1.09006 * 110.07186 * 142.91875 * 20 19 18 38 38 H 1.09002 * 110.03017 * 240.71676 * 21 20 19 39 39 H 1.08996 * 110.07624 * 119.30418 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1471 1.8888 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3367 2.1729 9 14 6.0049 0.8801 1.3812 10 1 6.5987 1.5453 0.1937 11 1 6.3999 1.6157 2.6093 12 1 6.4961 -0.5189 1.4627 13 7 1.6524 2.0975 -1.2518 14 6 0.8887 3.1709 -1.2248 15 7 0.4355 3.8906 -2.2698 16 6 -0.2985 4.9092 -1.9990 17 6 -0.8443 5.7738 -3.1062 18 6 -2.2216 6.3614 -2.7102 19 6 -2.3267 7.6201 -3.6067 20 6 -0.8923 8.1872 -3.6323 21 6 0.0503 7.0133 -3.3142 22 7 -0.5762 5.1887 -0.7205 23 1 -1.1173 5.9206 -0.3855 24 16 0.2157 3.9944 0.1960 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8293 -0.0618 2.9495 31 1 -0.9250 5.2022 -4.0308 32 1 -3.0218 5.6572 -2.9377 33 1 -2.2355 6.6361 -1.6555 34 1 -3.0152 8.3434 -3.1696 35 1 -2.6469 7.3466 -4.6121 36 1 -0.7855 8.9669 -2.8782 37 1 -0.6668 8.5900 -4.6198 38 1 0.6144 7.2232 -2.4054 39 1 0.7331 6.8455 -4.1470 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420614501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:33 Heat of formation + Delta-G solvation = 22.865856 kcal Electronic energy + Delta-G solvation = -19723.104344 eV Core-core repulsion = 16791.067111 eV Total energy + Delta-G solvation = -2932.037233 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.47915 -38.58175 -37.70994 -34.98756 -33.70547 -32.27552 -30.45519 -29.62772 -28.87362 -25.58877 -24.31318 -22.01568 -21.81115 -21.35825 -20.72768 -19.91857 -18.67463 -17.96450 -17.09673 -16.82630 -16.19160 -16.02545 -15.94480 -14.96115 -14.58117 -14.47173 -14.33428 -14.02487 -13.25938 -13.18890 -13.06554 -12.79106 -12.61442 -12.47028 -12.28478 -12.22954 -12.05977 -11.98544 -11.90595 -11.76824 -11.69144 -11.55330 -11.26135 -11.17530 -10.62210 -10.46217 -9.76400 -8.49470 -8.15805 -6.36209 -0.19667 0.12479 0.65409 1.37400 1.38380 1.51809 1.99700 2.36739 2.58940 3.05165 3.37147 3.49056 3.66605 3.75240 4.15868 4.37565 4.43722 4.46808 4.50018 4.56368 4.58563 4.60968 4.77955 4.84125 4.92935 4.97533 5.12468 5.12853 5.22404 5.29016 5.30826 5.35259 5.47114 5.51849 5.60483 5.85716 5.98133 6.15281 6.50890 6.66577 7.10868 7.35808 8.83931 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.027435 B = 0.004190 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.346478 B = 6680.258701 C = 7152.750512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 C 0.223 3.777 4 H -0.003 1.003 5 C -0.536 4.536 6 H 0.043 0.957 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.276 1.276 11 H -0.272 1.272 12 H -0.270 1.270 13 N -0.499 5.499 14 C 0.324 3.676 15 N -0.567 5.567 16 C 0.413 3.587 17 C -0.031 4.031 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.114 4.114 22 N -0.666 5.666 23 H 0.458 0.542 24 S 0.037 5.963 25 H 0.034 0.966 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.032 0.968 29 H 0.083 0.917 30 H 0.269 0.731 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.222 16.698 -7.995 23.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.143 4.143 3 C 0.113 3.887 4 H 0.014 0.986 5 C -0.574 4.574 6 H 0.061 0.939 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.791 3.209 10 H -0.200 1.200 11 H -0.197 1.197 12 H -0.195 1.195 13 N -0.224 5.224 14 C -0.067 4.067 15 N -0.300 5.300 16 C 0.129 3.871 17 C -0.055 4.055 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.156 4.156 21 C -0.153 4.153 22 N -0.401 5.401 23 H 0.307 0.693 24 S 0.159 5.841 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.133 0.867 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.443 15.501 -7.762 21.937 hybrid contribution 0.663 0.439 0.685 1.050 sum -12.780 15.941 -7.076 21.622 Atomic orbital electron populations 1.21670 0.96317 1.01204 0.99806 1.21468 0.94274 0.97236 1.01361 1.19338 0.95056 0.91941 0.82363 0.98580 1.21263 0.91225 1.39135 1.05785 0.93859 1.25685 1.03337 0.94124 0.94674 1.69978 1.36765 1.38211 1.09756 0.85382 0.79147 0.78342 0.78030 1.20032 1.19679 1.19518 1.71877 1.12498 1.07072 1.30923 1.26459 0.97180 0.95934 0.87124 1.67872 1.22856 1.10816 1.28447 1.23538 0.87046 0.89500 0.86979 1.21351 0.96754 0.93988 0.93397 1.22690 0.93755 0.98283 1.00784 1.22341 0.96723 0.95956 1.00301 1.22137 0.94109 0.96519 1.02831 1.22198 0.98042 0.92934 1.02154 1.47010 1.53997 1.33039 1.06016 0.69326 1.86374 1.58059 1.26263 1.13446 0.94716 0.91654 0.93892 0.94914 0.89908 0.92199 0.86667 0.89688 0.90518 0.89504 0.90317 0.90753 0.90399 0.92537 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.87 9.80 71.98 0.71 -5.17 16 2 C -0.10 -5.55 5.45 30.59 0.17 -5.38 16 3 C 0.22 12.66 2.33 44.25 0.10 12.76 16 4 H 0.00 -0.19 6.46 -2.39 -0.02 -0.20 16 5 C -0.54 -32.64 8.84 25.60 0.23 -32.42 16 6 H 0.04 2.74 7.81 -2.91 -0.02 2.71 16 7 C 0.02 1.27 5.29 84.65 0.45 1.72 16 8 N -0.91 -53.00 11.29 21.45 0.24 -52.76 16 9 Si 0.97 45.50 29.54 68.60 2.03 47.52 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 N -0.50 -26.96 9.73 -330.02 -3.21 -30.17 16 14 C 0.32 15.09 8.61 179.99 1.55 16.64 16 15 N -0.57 -22.40 10.58 -190.79 -2.02 -24.42 16 16 C 0.41 11.64 6.39 139.12 0.89 12.53 16 17 C -0.03 -0.56 3.31 -10.46 -0.03 -0.60 16 18 C -0.12 -1.26 6.23 31.89 0.20 -1.06 16 19 C -0.12 -0.87 6.83 31.67 0.22 -0.65 16 20 C -0.12 -1.12 6.80 31.32 0.21 -0.91 16 21 C -0.11 -1.79 6.36 31.32 0.20 -1.59 16 22 N -0.67 -17.08 6.45 -54.28 -0.35 -17.43 16 23 H 0.46 7.59 7.20 -92.71 -0.67 6.92 16 24 S 0.04 1.44 22.44 -56.49 -1.27 0.17 16 25 H 0.03 1.53 7.75 -2.38 -0.02 1.51 16 26 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.08 4.70 5.95 -2.39 -0.01 4.68 16 30 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 31 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.68 6.22 -2.39 -0.01 0.66 16 34 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 35 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.06 1.02 7.83 -2.39 -0.02 1.01 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -73.69 326.55 0.69 -73.00 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.38 Total: 8.20 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 4.88 Total: -4.12 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -5.34 Total: -124.78 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -1.27 Total: 0.17 kcal Total: -73.69 0.69 -73.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420614501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.869 kcal (2) G-P(sol) polarization free energy of solvation -73.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds