Wall clock time and date at job start Tue Mar 31 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.08998 * 109.47309 * 305.67950 * 3 2 1 5 5 C 1.50700 * 109.47325 * 185.67972 * 3 2 1 6 6 H 1.08002 * 119.99903 * 245.67092 * 5 3 2 7 7 C 1.37873 * 120.00086 * 65.66515 * 5 3 2 8 8 N 1.31516 * 120.00411 * 196.88077 * 7 5 3 9 9 Si 1.86803 * 120.00049 * 16.88428 * 7 5 3 10 10 H 1.48497 * 109.47285 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47063 * 300.00171 * 9 7 5 12 12 H 1.48504 * 109.46981 * 59.99759 * 9 7 5 13 13 N 1.46499 * 109.47268 * 65.67686 * 3 2 1 14 14 C 1.31755 * 120.00494 * 240.00098 * 13 3 2 15 15 N 1.34731 * 127.89738 * 179.69950 * 14 13 3 16 16 C 1.28445 * 116.90105 * 179.84083 * 15 14 13 17 17 C 1.50698 * 120.47470 * 180.23060 * 16 15 14 18 18 C 1.54270 * 110.03496 * 213.17305 * 17 16 15 19 19 C 1.54960 * 104.15935 * 217.13453 * 18 17 16 20 20 C 1.54891 * 102.78092 * 37.88733 * 19 18 17 21 21 C 1.53876 * 110.03628 * 95.95238 * 17 16 15 22 22 N 1.33792 * 119.05264 * 0.48903 * 16 15 14 23 23 H 0.97003 * 127.11172 * 179.75951 * 22 16 15 24 24 S 1.70097 * 105.76379 * 359.74028 * 22 16 15 25 25 H 1.09005 * 109.47402 * 60.00372 * 1 2 3 26 26 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47632 * 300.00255 * 1 2 3 28 28 H 1.09000 * 109.47676 * 240.00300 * 2 1 3 29 29 H 1.09005 * 109.47402 * 119.99627 * 2 1 3 30 30 H 0.97002 * 119.99714 * 354.40218 * 8 7 5 31 31 H 1.09004 * 110.01660 * 334.56468 * 17 16 15 32 32 H 1.08997 * 110.48129 * 335.78087 * 18 17 16 33 33 H 1.08999 * 110.48435 * 98.42449 * 18 17 16 34 34 H 1.09000 * 110.72186 * 279.57031 * 19 18 17 35 35 H 1.09007 * 110.76418 * 156.22376 * 19 18 17 36 36 H 1.08996 * 110.48436 * 203.40505 * 20 19 18 37 37 H 1.09000 * 110.59538 * 80.81541 * 20 19 18 38 38 H 1.08993 * 110.03642 * 238.57510 * 21 17 16 39 39 H 1.08999 * 110.02598 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5960 1.9849 -0.8347 5 6 3.5403 1.4449 -0.1406 6 1 4.1581 1.8028 0.6698 7 6 4.1245 0.9902 -1.3037 8 7 5.4017 0.6771 -1.3195 9 14 3.1017 0.8187 -2.8575 10 1 3.9583 0.3148 -3.9609 11 1 1.9912 -0.1372 -2.6161 12 1 2.5426 2.1429 -3.2307 13 7 1.6664 2.0926 1.2586 14 6 0.9025 3.1661 1.2444 15 7 0.4611 3.8817 2.2971 16 6 -0.2761 4.9013 2.0387 17 6 -0.8095 5.7614 3.1552 18 6 -2.1986 6.3162 2.7775 19 6 -2.2057 7.7509 3.3630 20 6 -0.7548 8.2311 3.1110 21 6 0.1081 6.9783 3.3676 22 7 -0.5680 5.1857 0.7643 23 1 -1.1124 5.9193 0.4383 24 16 0.2136 3.9951 -0.1656 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.9512 0.8423 -0.5373 31 1 -0.8770 5.1798 4.0746 32 1 -2.3158 6.3457 1.6943 33 1 -2.9859 5.7142 3.2312 34 1 -2.4261 7.7309 4.4303 35 1 -2.9190 8.3814 2.8320 36 1 -0.4897 9.0261 3.8079 37 1 -0.6368 8.5715 2.0823 38 1 0.4852 6.9877 4.3902 39 1 0.9389 6.9469 2.6628 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420614502.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:36 Heat of formation + Delta-G solvation = 45.620344 kcal Electronic energy + Delta-G solvation = -19861.200782 eV Core-core repulsion = 16930.150257 eV Total energy + Delta-G solvation = -2931.050524 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.39647 -37.65783 -36.17335 -33.33163 -32.07073 -30.90694 -29.64572 -29.05689 -27.16757 -23.77800 -22.31583 -21.08175 -20.70757 -20.35277 -19.47949 -18.49071 -17.64389 -16.83783 -16.16624 -15.25992 -15.12272 -14.83811 -13.96547 -13.89453 -13.65944 -13.15645 -12.85052 -12.37050 -12.18521 -11.97991 -11.81790 -11.49027 -11.47416 -11.44822 -11.31136 -11.05487 -10.95624 -10.82839 -10.52954 -10.48269 -10.38098 -9.79075 -9.62477 -9.27019 -8.86492 -8.38795 -8.15148 -7.01343 -6.46075 -4.12490 1.10049 1.45257 2.14822 3.33783 3.39750 3.43367 3.55874 3.72913 4.15028 4.26505 4.42829 4.49501 4.59776 4.99233 5.02271 5.10957 5.12382 5.19262 5.27476 5.28506 5.47687 5.55845 5.72778 5.80573 5.90395 5.95421 5.95708 5.96237 6.10798 6.28577 6.50921 6.62617 6.83604 6.92263 7.06378 7.31087 7.76882 7.98342 8.34669 8.56812 8.95698 9.55170 10.88562 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.029453 B = 0.004422 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.423657 B = 6330.980486 C = 6481.167745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C 0.194 3.806 4 H 0.007 0.993 5 C -0.590 4.590 6 H 0.065 0.935 7 C 0.036 3.964 8 N -0.898 5.898 9 Si 1.034 2.966 10 H -0.280 1.280 11 H -0.269 1.269 12 H -0.280 1.280 13 N -0.431 5.431 14 C 0.321 3.679 15 N -0.524 5.524 16 C 0.395 3.605 17 C -0.031 4.031 18 C -0.122 4.122 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.115 4.115 22 N -0.695 5.695 23 H 0.438 0.562 24 S 0.041 5.959 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.270 0.730 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.805 14.414 6.237 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C 0.083 3.917 4 H 0.024 0.976 5 C -0.629 4.629 6 H 0.083 0.917 7 C -0.170 4.170 8 N -0.532 5.532 9 Si 0.862 3.138 10 H -0.205 1.205 11 H -0.195 1.195 12 H -0.206 1.206 13 N -0.153 5.153 14 C -0.070 4.070 15 N -0.254 5.254 16 C 0.110 3.890 17 C -0.054 4.054 18 C -0.160 4.160 19 C -0.161 4.161 20 C -0.164 4.164 21 C -0.154 4.154 22 N -0.427 5.427 23 H 0.282 0.718 24 S 0.161 5.839 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.130 0.870 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.904 12.720 4.626 21.655 hybrid contribution -0.589 1.497 1.226 2.022 sum -17.493 14.216 5.851 23.288 Atomic orbital electron populations 1.21886 0.98087 1.00391 1.00797 1.22022 0.92980 0.98120 1.02708 1.19907 0.97747 0.90839 0.83179 0.97599 1.21893 0.88570 1.48711 1.03688 0.91688 1.25702 0.97721 0.92594 1.00957 1.70845 1.07113 1.40746 1.34500 0.84203 0.75790 0.77591 0.76246 1.20533 1.19546 1.20569 1.71890 1.08510 1.04728 1.30196 1.26166 0.98551 0.96795 0.85526 1.67812 1.20228 1.08892 1.28481 1.22810 0.89363 0.90693 0.86131 1.20854 0.94825 0.94774 0.94972 1.22541 0.95633 0.96876 1.00976 1.22519 0.96901 0.95269 1.01379 1.22412 0.94733 0.97357 1.01880 1.22182 0.97885 0.92148 1.03177 1.47030 1.54972 1.33718 1.07009 0.71832 1.86252 1.58210 1.25677 1.13774 0.93684 0.93557 0.93437 0.90918 0.91662 0.91948 0.86986 0.91561 0.90303 0.90855 0.91124 0.91097 0.91519 0.90231 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.80 37.15 0.36 -2.68 16 2 C -0.12 -2.83 5.28 -26.73 -0.14 -2.97 16 3 C 0.19 5.04 1.91 -69.08 -0.13 4.91 16 4 H 0.01 0.17 5.12 -51.93 -0.27 -0.09 16 5 C -0.59 -17.61 9.11 -34.44 -0.31 -17.92 16 6 H 0.06 2.14 8.06 -52.49 -0.42 1.72 16 7 C 0.04 1.08 5.31 -17.82 -0.09 0.98 16 8 N -0.90 -27.99 13.69 55.43 0.76 -27.24 16 9 Si 1.03 25.42 26.28 -169.99 -4.47 20.95 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.06 5.71 56.52 0.32 -5.74 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.43 -10.93 9.76 -55.66 -0.54 -11.48 16 14 C 0.32 7.10 8.61 -89.60 -0.77 6.33 16 15 N -0.52 -10.07 10.58 -11.66 -0.12 -10.19 16 16 C 0.39 5.64 6.24 -158.23 -0.99 4.65 16 17 C -0.03 -0.30 3.36 -90.65 -0.30 -0.60 16 18 C -0.12 -0.83 6.32 -25.03 -0.16 -0.99 16 19 C -0.12 -0.67 6.91 -24.70 -0.17 -0.84 16 20 C -0.13 -0.80 6.83 -25.07 -0.17 -0.97 16 21 C -0.12 -1.00 6.45 -25.61 -0.17 -1.16 16 22 N -0.69 -9.15 6.34 31.49 0.20 -8.95 16 23 H 0.44 4.06 7.22 -40.82 -0.29 3.77 16 24 S 0.04 0.76 22.44 -107.50 -2.41 -1.66 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.95 7.77 -51.93 -0.40 0.54 16 28 H 0.07 1.74 4.81 -51.93 -0.25 1.49 16 29 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.27 8.43 8.73 -40.82 -0.36 8.08 16 31 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.43 5.87 -51.93 -0.30 0.12 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.76 7.67 -51.93 -0.40 0.36 16 LS Contribution 321.80 15.07 4.85 4.85 Total: -1.00 -34.03 321.80 -10.58 -44.61 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.80 Total: 0.36 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -3.05 Total: -11.27 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.29 Total: -57.85 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -4.47 Total: 20.95 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.41 Total: -1.66 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.03 -10.58 -44.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420614502.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.233 kcal (2) G-P(sol) polarization free energy of solvation -34.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds