Wall clock time and date at job start Tue Mar 31 2020 05:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38211 * 119.97805 * 2 1 4 4 C 1.38470 * 120.02764 * 180.02562 * 3 2 1 5 5 F 1.35101 * 120.01119 * 180.02562 * 4 3 2 6 6 C 1.38414 * 119.97444 * 359.97438 * 4 3 2 7 7 C 1.50707 * 120.02215 * 179.72093 * 6 4 3 8 8 N 1.46907 * 109.46486 * 90.00847 * 7 6 4 9 9 C 1.46899 * 110.99586 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47215 * 174.69884 * 9 8 7 11 11 C 1.50706 * 115.55149 * 65.16138 * 10 9 8 12 12 H 1.07991 * 120.00262 * 264.97439 * 11 10 9 13 13 C 1.37882 * 119.99501 * 84.97100 * 11 10 9 14 14 N 1.31510 * 120.00112 * 353.06338 * 13 11 10 15 15 Si 1.86797 * 119.99725 * 173.07130 * 13 11 10 16 16 H 1.48498 * 109.47487 * 59.99792 * 15 13 11 17 17 H 1.48505 * 109.47377 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46955 * 299.99830 * 15 13 11 19 19 C 1.53000 * 117.50054 * 279.49899 * 10 9 8 20 20 C 1.52994 * 117.50250 * 210.83612 * 10 9 8 21 21 C 1.38411 * 119.95109 * 0.02562 * 6 4 3 22 22 F 1.35102 * 120.01240 * 179.97438 * 21 6 4 23 23 C 1.38208 * 119.97589 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47151 * 89.99948 * 1 2 3 25 25 H 1.08999 * 109.47307 * 209.99545 * 1 2 3 26 26 H 1.09003 * 109.47432 * 330.00196 * 1 2 3 27 27 H 1.08003 * 119.98289 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.46977 * 209.99959 * 7 6 4 29 29 H 1.08997 * 109.47693 * 330.00895 * 7 6 4 30 30 H 1.00899 * 111.00372 * 56.04415 * 8 7 6 31 31 H 1.09004 * 109.47117 * 294.69825 * 9 8 7 32 32 H 1.09003 * 109.47260 * 54.69745 * 9 8 7 33 33 H 0.96998 * 120.00029 * 185.04453 * 14 13 11 34 34 H 1.09002 * 117.49800 * 359.97438 * 19 10 9 35 35 H 1.09000 * 117.50129 * 145.01401 * 19 10 9 36 36 H 1.09003 * 117.50339 * 214.97573 * 20 10 9 37 37 H 1.09002 * 117.49662 * 359.97438 * 20 10 9 38 38 H 1.07999 * 119.98824 * 359.95315 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1975 1.1972 0.0000 4 6 3.5822 1.1984 -0.0005 5 9 4.2569 2.3689 0.0000 6 6 4.2748 0.0000 -0.0005 7 6 5.7818 0.0000 -0.0075 8 7 6.2777 0.0035 1.3754 9 6 7.7464 0.0043 1.4078 10 6 8.2244 0.1412 2.8548 11 6 7.8830 -1.0112 3.7639 12 1 6.9955 -0.9702 4.3778 13 6 8.7040 -2.1180 3.8119 14 7 9.7071 -2.2297 2.9688 15 14 8.3911 -3.4587 5.0744 16 1 7.0348 -4.0268 4.8676 17 1 9.4057 -4.5319 4.9186 18 1 8.4839 -2.8837 6.4404 19 6 8.2346 1.5439 3.4657 20 6 9.5531 0.8606 3.0947 21 6 3.5822 -1.1984 -0.0005 22 9 4.2569 -2.3688 -0.0011 23 6 2.1974 -1.1972 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6568 2.1322 -0.0004 28 1 6.1428 -0.8913 -0.5206 29 1 6.1428 0.8887 -0.5252 30 1 5.9046 -0.7765 1.8954 31 1 8.1195 -0.9302 0.9888 32 1 8.1224 0.8418 0.8202 33 1 10.2396 -3.0403 2.9534 34 1 7.9010 2.3692 2.8367 35 1 7.9947 1.6331 4.5253 36 1 10.1803 0.5008 3.9104 37 1 10.0870 1.2361 2.2217 38 1 1.6569 -2.1322 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424192523.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:39 Heat of formation + Delta-G solvation = -50.128394 kcal Electronic energy + Delta-G solvation = -21758.472025 eV Core-core repulsion = 18237.136386 eV Total energy + Delta-G solvation = -3521.335639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.90173 -48.83831 -39.15850 -36.95398 -34.91406 -32.31747 -31.85477 -30.34089 -28.48677 -25.74252 -24.81897 -22.97452 -22.80780 -21.13173 -20.84409 -19.03967 -17.54698 -17.42194 -16.22854 -15.93675 -15.67799 -15.62000 -15.13868 -14.66391 -14.56202 -14.22670 -13.88298 -13.74820 -13.63959 -13.25182 -13.16654 -12.62927 -12.16762 -12.11723 -11.76701 -11.54203 -11.31277 -11.25658 -10.95960 -10.91863 -10.80726 -10.42542 -10.08339 -9.41597 -8.76739 -8.74125 -8.71087 -8.38820 -8.01426 -7.51348 -5.98960 -4.04919 0.94035 0.97718 3.28057 3.32357 3.37225 3.40319 3.91810 4.34088 4.43051 4.47900 4.67625 4.72304 5.01576 5.14805 5.17964 5.29798 5.31948 5.46201 5.57255 5.67774 5.79150 5.87370 5.96129 5.99899 6.12154 6.20285 6.24882 6.51845 6.61781 6.77174 6.86385 6.88415 6.95430 7.21427 7.55618 7.58797 7.91619 7.95514 8.23759 8.53967 8.97923 9.60572 11.09002 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.004916 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.196453 B = 5693.954799 C = 6542.211975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.036 4.036 3 C -0.171 4.171 4 C 0.154 3.846 5 F -0.124 7.124 6 C -0.148 4.148 7 C 0.096 3.904 8 N -0.672 5.672 9 C 0.106 3.894 10 C 0.050 3.950 11 C -0.494 4.494 12 H 0.059 0.941 13 C 0.071 3.929 14 N -0.880 5.880 15 Si 0.887 3.113 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.200 4.200 20 C -0.161 4.161 21 C 0.139 3.861 22 F -0.127 7.127 23 C -0.170 4.170 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.139 0.861 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.348 0.652 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.260 0.740 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.067 3.969 -8.572 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.037 4.037 3 C -0.190 4.190 4 C 0.134 3.866 5 F -0.102 7.102 6 C -0.151 4.151 7 C -0.033 4.033 8 N -0.304 5.304 9 C -0.022 4.022 10 C 0.050 3.950 11 C -0.532 4.532 12 H 0.077 0.923 13 C -0.132 4.132 14 N -0.517 5.517 15 Si 0.715 3.285 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.237 4.237 20 C -0.199 4.199 21 C 0.119 3.881 22 F -0.105 7.105 23 C -0.188 4.188 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.157 0.843 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.167 0.833 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.832 4.546 -8.518 18.543 hybrid contribution 0.478 -1.739 0.408 1.849 sum -15.354 2.807 -8.110 17.590 Atomic orbital electron populations 1.20808 0.89908 1.03456 1.02807 1.19454 0.96432 0.91319 0.96473 1.21013 0.92008 0.99456 1.06544 1.17091 0.89306 0.80783 0.99458 1.91535 1.80415 1.45014 1.93263 1.19972 0.98007 0.91053 1.06041 1.20712 0.87579 1.01527 0.93518 1.60554 1.10146 1.50711 1.08952 1.21467 0.84740 0.98365 0.97675 1.18704 0.95278 0.89629 0.91420 1.20421 1.08692 1.00825 1.23227 0.92296 1.24994 0.94610 0.98060 0.95539 1.69976 1.19047 1.26864 1.35811 0.86742 0.77854 0.81457 0.82443 1.20287 1.21391 1.20207 1.22870 1.03234 0.97861 0.99745 1.22530 0.91044 1.05122 1.01231 1.17237 0.89654 0.80806 1.00443 1.91552 1.80367 1.45170 1.93413 1.20997 0.91928 0.99511 1.06412 0.90575 0.90931 0.90922 0.84302 0.94177 0.90189 0.83286 0.94436 0.94280 0.93066 0.91653 0.90919 0.90324 0.92179 0.84303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.00 0.36 -0.39 16 2 C -0.04 -0.37 5.88 -104.65 -0.62 -0.98 16 3 C -0.17 -1.93 9.68 -39.51 -0.38 -2.31 16 4 C 0.15 2.19 7.24 -39.43 -0.29 1.90 16 5 F -0.12 -1.92 16.48 2.25 0.04 -1.88 16 6 C -0.15 -2.30 5.40 -104.49 -0.56 -2.87 16 7 C 0.10 1.68 5.45 -4.97 -0.03 1.65 16 8 N -0.67 -13.96 6.46 -115.05 -0.74 -14.70 16 9 C 0.11 2.45 5.54 -3.83 -0.02 2.43 16 10 C 0.05 1.27 1.56 -155.66 -0.24 1.03 16 11 C -0.49 -13.49 8.33 -34.44 -0.29 -13.78 16 12 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 13 C 0.07 1.95 5.39 -17.82 -0.10 1.86 16 14 N -0.88 -25.05 12.95 55.43 0.72 -24.33 16 15 Si 0.89 21.30 29.55 -169.99 -5.02 16.28 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.20 -4.62 9.96 -26.69 -0.27 -4.88 16 20 C -0.16 -3.92 9.46 -26.70 -0.25 -4.17 16 21 C 0.14 2.01 7.24 -39.43 -0.29 1.73 16 22 F -0.13 -2.04 16.48 2.25 0.04 -2.01 16 23 C -0.17 -1.95 9.68 -39.50 -0.38 -2.33 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 26 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 27 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 28 H 0.04 0.71 7.64 -51.93 -0.40 0.31 16 29 H 0.08 1.35 7.64 -51.93 -0.40 0.96 16 30 H 0.35 7.67 8.30 -39.29 -0.33 7.35 16 31 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 33 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 34 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 37 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -28.99 332.96 -8.61 -37.60 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.31 Total: 5.13 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -3.35 Total: -21.11 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: -0.03 Total: -39.03 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.07 Total: -3.89 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.99 -8.61 -37.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424192523.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.528 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds