Wall clock time and date at job start Tue Mar 31 2020 05:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38211 * 119.97805 * 2 1 4 4 C 1.38470 * 120.02764 * 180.02562 * 3 2 1 5 5 F 1.35101 * 120.01119 * 180.02562 * 4 3 2 6 6 C 1.38414 * 119.97444 * 359.97438 * 4 3 2 7 7 C 1.50707 * 120.02215 * 179.72093 * 6 4 3 8 8 N 1.46907 * 109.46486 * 90.00847 * 7 6 4 9 9 C 1.46899 * 110.99586 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47215 * 174.69884 * 9 8 7 11 11 C 1.50706 * 115.55149 * 65.16138 * 10 9 8 12 12 H 1.07991 * 120.00262 * 264.97439 * 11 10 9 13 13 C 1.37882 * 119.99501 * 84.97100 * 11 10 9 14 14 N 1.31510 * 120.00112 * 353.06338 * 13 11 10 15 15 Si 1.86797 * 119.99725 * 173.07130 * 13 11 10 16 16 H 1.48498 * 109.47487 * 59.99792 * 15 13 11 17 17 H 1.48505 * 109.47377 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46955 * 299.99830 * 15 13 11 19 19 C 1.53000 * 117.50054 * 279.49899 * 10 9 8 20 20 C 1.52994 * 117.50250 * 210.83612 * 10 9 8 21 21 C 1.38411 * 119.95109 * 0.02562 * 6 4 3 22 22 F 1.35102 * 120.01240 * 179.97438 * 21 6 4 23 23 C 1.38208 * 119.97589 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47151 * 89.99948 * 1 2 3 25 25 H 1.08999 * 109.47307 * 209.99545 * 1 2 3 26 26 H 1.09003 * 109.47432 * 330.00196 * 1 2 3 27 27 H 1.08003 * 119.98289 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.46977 * 209.99959 * 7 6 4 29 29 H 1.08997 * 109.47693 * 330.00895 * 7 6 4 30 30 H 1.00899 * 111.00372 * 56.04415 * 8 7 6 31 31 H 1.09004 * 109.47117 * 294.69825 * 9 8 7 32 32 H 1.09003 * 109.47260 * 54.69745 * 9 8 7 33 33 H 0.96998 * 120.00029 * 185.04453 * 14 13 11 34 34 H 1.09002 * 117.49800 * 359.97438 * 19 10 9 35 35 H 1.09000 * 117.50129 * 145.01401 * 19 10 9 36 36 H 1.09003 * 117.50339 * 214.97573 * 20 10 9 37 37 H 1.09002 * 117.49662 * 359.97438 * 20 10 9 38 38 H 1.07999 * 119.98824 * 359.95315 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1975 1.1972 0.0000 4 6 3.5822 1.1984 -0.0005 5 9 4.2569 2.3689 0.0000 6 6 4.2748 0.0000 -0.0005 7 6 5.7818 0.0000 -0.0075 8 7 6.2777 0.0035 1.3754 9 6 7.7464 0.0043 1.4078 10 6 8.2244 0.1412 2.8548 11 6 7.8830 -1.0112 3.7639 12 1 6.9955 -0.9702 4.3778 13 6 8.7040 -2.1180 3.8119 14 7 9.7071 -2.2297 2.9688 15 14 8.3911 -3.4587 5.0744 16 1 7.0348 -4.0268 4.8676 17 1 9.4057 -4.5319 4.9186 18 1 8.4839 -2.8837 6.4404 19 6 8.2346 1.5439 3.4657 20 6 9.5531 0.8606 3.0947 21 6 3.5822 -1.1984 -0.0005 22 9 4.2569 -2.3688 -0.0011 23 6 2.1974 -1.1972 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6568 2.1322 -0.0004 28 1 6.1428 -0.8913 -0.5206 29 1 6.1428 0.8887 -0.5252 30 1 5.9046 -0.7765 1.8954 31 1 8.1195 -0.9302 0.9888 32 1 8.1224 0.8418 0.8202 33 1 10.2396 -3.0403 2.9534 34 1 7.9010 2.3692 2.8367 35 1 7.9947 1.6331 4.5253 36 1 10.1803 0.5008 3.9104 37 1 10.0870 1.2361 2.2217 38 1 1.6569 -2.1322 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424192523.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:38 Heat of formation + Delta-G solvation = -65.624073 kcal Electronic energy + Delta-G solvation = -21759.143968 eV Core-core repulsion = 18237.136386 eV Total energy + Delta-G solvation = -3522.007582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.06448 -49.95619 -40.14889 -38.79085 -36.39708 -34.00203 -33.41314 -31.30772 -29.59930 -27.65260 -26.34302 -24.29208 -23.93434 -22.84400 -22.15107 -21.00552 -18.61385 -18.50372 -18.00713 -17.10748 -17.06363 -16.70448 -16.63056 -16.29444 -16.05441 -15.78836 -15.39101 -15.21434 -14.61308 -14.32432 -14.24008 -14.06122 -13.49266 -13.36615 -13.14102 -12.95707 -12.83307 -12.72329 -12.59180 -12.41247 -12.30423 -12.17079 -12.00690 -11.35182 -10.75206 -10.42970 -10.04084 -9.75096 -9.68432 -9.23627 -8.09741 -6.21175 -0.05753 -0.00801 1.40324 1.41749 1.48767 2.30521 2.41874 2.90276 3.17760 3.25760 3.38707 3.52158 3.64316 3.76101 3.86295 4.16213 4.27514 4.41958 4.46098 4.61600 4.61829 4.70236 4.74387 4.86974 4.90848 4.93434 4.94549 4.99532 5.04653 5.08840 5.26227 5.29572 5.39015 5.63672 5.64658 5.77430 5.81248 6.20660 6.45561 6.46484 6.86402 7.46769 8.97540 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.004916 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.196453 B = 5693.954799 C = 6542.211975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.023 4.023 3 C -0.162 4.162 4 C 0.136 3.864 5 F -0.136 7.136 6 C -0.173 4.173 7 C 0.101 3.899 8 N -0.670 5.670 9 C 0.120 3.880 10 C 0.025 3.975 11 C -0.505 4.505 12 H 0.050 0.950 13 C 0.027 3.973 14 N -0.907 5.907 15 Si 0.947 3.053 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.178 4.178 20 C -0.164 4.164 21 C 0.116 3.884 22 F -0.144 7.144 23 C -0.163 4.163 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.168 0.832 28 H 0.030 0.970 29 H 0.082 0.918 30 H 0.338 0.662 31 H 0.006 0.994 32 H 0.049 0.951 33 H 0.259 0.741 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.904 4.426 -8.551 21.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.023 4.023 3 C -0.180 4.180 4 C 0.116 3.884 5 F -0.115 7.115 6 C -0.175 4.175 7 C -0.028 4.028 8 N -0.300 5.300 9 C -0.009 4.009 10 C 0.024 3.976 11 C -0.543 4.543 12 H 0.069 0.931 13 C -0.174 4.174 14 N -0.545 5.545 15 Si 0.773 3.227 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.215 4.215 20 C -0.202 4.202 21 C 0.096 3.904 22 F -0.123 7.123 23 C -0.182 4.182 24 H 0.113 0.887 25 H 0.103 0.897 26 H 0.106 0.894 27 H 0.186 0.814 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.156 0.844 31 H 0.024 0.976 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -18.683 5.017 -8.499 21.130 hybrid contribution 1.255 -1.839 0.366 2.257 sum -17.428 3.178 -8.133 19.493 Atomic orbital electron populations 1.20938 0.86668 1.04856 1.04388 1.19942 0.98482 0.90155 0.93744 1.21379 0.90653 1.01279 1.04713 1.17349 0.90522 0.79886 1.00668 1.91499 1.80920 1.45492 1.93547 1.19830 0.96559 0.92345 1.08766 1.20637 0.89638 1.01090 0.91468 1.60541 1.08501 1.49982 1.10982 1.21205 0.86232 0.97056 0.96416 1.18862 0.96176 0.90259 0.92312 1.20624 1.08398 1.01844 1.23416 0.93139 1.25654 0.94498 1.00130 0.97077 1.70086 1.19868 1.27391 1.37167 0.85797 0.77818 0.78949 0.80183 1.19750 1.21128 1.19799 1.22835 1.01607 0.97145 0.99915 1.22454 0.91086 1.05585 1.01086 1.17548 0.90921 0.79927 1.01996 1.91503 1.80984 1.46006 1.93779 1.21342 0.90555 1.01359 1.04905 0.88681 0.89721 0.89437 0.81448 0.95141 0.89929 0.84416 0.97594 0.93296 0.93209 0.89812 0.90893 0.92333 0.91015 0.81883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 71.23 0.71 -0.23 16 2 C -0.02 -0.38 5.88 -19.88 -0.12 -0.50 16 3 C -0.16 -3.18 9.68 22.32 0.22 -2.96 16 4 C 0.14 3.74 7.24 22.37 0.16 3.90 16 5 F -0.14 -4.13 16.48 44.97 0.74 -3.39 16 6 C -0.17 -5.39 5.40 -19.78 -0.11 -5.50 16 7 C 0.10 3.64 5.45 85.56 0.47 4.10 16 8 N -0.67 -28.50 6.46 -517.90 -3.34 -31.84 16 9 C 0.12 5.68 5.54 86.30 0.48 6.16 16 10 C 0.02 1.25 1.56 -52.93 -0.08 1.17 16 11 C -0.50 -28.00 8.33 25.60 0.21 -27.79 16 12 H 0.05 2.82 7.82 -2.92 -0.02 2.80 16 13 C 0.03 1.49 5.39 84.66 0.46 1.94 16 14 N -0.91 -52.68 12.95 21.45 0.28 -52.40 16 15 Si 0.95 44.13 29.55 68.60 2.03 46.16 16 16 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 19 C -0.18 -8.11 9.96 30.62 0.30 -7.80 16 20 C -0.16 -8.03 9.46 30.62 0.29 -7.74 16 21 C 0.12 3.34 7.24 22.37 0.16 3.50 16 22 F -0.14 -4.77 16.48 44.97 0.74 -4.03 16 23 C -0.16 -3.38 9.68 22.32 0.22 -3.16 16 24 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 26 H 0.09 0.55 8.09 -2.39 -0.02 0.53 16 27 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 28 H 0.03 1.14 7.64 -2.39 -0.02 1.12 16 29 H 0.08 2.87 7.64 -2.39 -0.02 2.86 16 30 H 0.34 15.43 8.30 -89.69 -0.74 14.68 16 31 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.05 2.17 8.08 -2.39 -0.02 2.15 16 33 H 0.26 14.45 8.32 -92.71 -0.77 13.68 16 34 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 35 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 36 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 38 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -63.35 332.96 4.14 -59.21 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.33 Total: 21.20 kcal Atomic # 6 Polarization: -38.28 SS G_CDS: 3.37 Total: -34.91 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -3.07 Total: -84.24 kcal Atomic # 9 Polarization: -8.90 SS G_CDS: 1.48 Total: -7.42 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -63.35 4.14 -59.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424192523.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.415 kcal (2) G-P(sol) polarization free energy of solvation -63.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds