Wall clock time and date at job start Tue Mar 31 2020 06:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00153 * 2 1 4 4 N 1.46911 * 109.46906 * 124.16449 * 3 2 1 5 5 C 1.46901 * 110.99600 * 301.34370 * 4 3 2 6 6 C 1.50700 * 109.47173 * 289.41384 * 5 4 3 7 7 H 1.08007 * 120.00118 * 355.26722 * 6 5 4 8 8 C 1.37880 * 120.00303 * 175.26616 * 6 5 4 9 9 N 1.31511 * 119.99577 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99915 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47217 * 60.00455 * 10 8 6 12 12 H 1.48503 * 109.46870 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47257 * 299.99846 * 10 8 6 14 14 C 1.46902 * 111.00078 * 65.29432 * 4 3 2 15 15 C 1.50694 * 109.46740 * 66.04631 * 14 4 3 16 16 C 1.38236 * 120.00196 * 269.72352 * 15 14 4 17 17 C 1.38232 * 120.00222 * 179.76995 * 16 15 14 18 18 C 1.38244 * 119.99598 * 0.48598 * 17 16 15 19 19 C 1.50703 * 119.99647 * 179.76977 * 18 17 16 20 20 F 1.39895 * 109.46993 * 120.02307 * 19 18 17 21 21 F 1.39898 * 109.47066 * 240.02207 * 19 18 17 22 22 C 1.38229 * 119.99930 * 359.78986 * 18 17 16 23 23 C 1.38227 * 120.00350 * 359.95817 * 22 18 17 24 24 H 1.08009 * 119.99550 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.00337 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00087 * 180.02562 * 2 1 3 27 27 H 1.08993 * 109.47423 * 4.16875 * 3 2 1 28 28 H 1.09000 * 109.47271 * 244.15935 * 3 2 1 29 29 H 1.09002 * 109.47757 * 49.41746 * 5 4 3 30 30 H 1.09003 * 109.46672 * 169.42163 * 5 4 3 31 31 H 0.97000 * 119.99821 * 180.02562 * 9 8 6 32 32 H 1.09000 * 109.47040 * 306.04748 * 14 4 3 33 33 H 1.08996 * 109.47187 * 186.04716 * 14 4 3 34 34 H 1.07998 * 119.99841 * 359.97438 * 16 15 14 35 35 H 1.07997 * 120.00566 * 180.25533 * 17 16 15 36 36 H 1.09003 * 109.47399 * 0.02562 * 19 18 17 37 37 H 1.08007 * 119.99913 * 179.97438 * 22 18 17 38 38 H 1.08002 * 120.00330 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9820 1.3402 1.1461 5 6 2.2510 1.1881 2.4112 6 6 1.4492 2.4352 2.6811 7 1 1.5383 3.2874 2.0236 8 6 0.6018 2.4884 3.7675 9 7 0.4936 1.4509 4.5684 10 14 -0.3926 4.0340 4.1015 11 1 -1.2776 4.3135 2.9423 12 1 -1.2199 3.8368 5.3189 13 1 0.5286 5.1802 4.3088 14 6 4.0266 0.3156 1.0152 15 6 4.9086 0.6451 -0.1614 16 6 4.6002 0.1529 -1.4157 17 6 5.4067 0.4590 -2.4959 18 6 6.5272 1.2493 -2.3198 19 6 7.4093 1.5788 -3.4964 20 9 7.4517 2.9659 -3.6734 21 9 8.7019 1.0993 -3.2589 22 6 6.8387 1.7368 -1.0644 23 6 6.0294 1.4350 0.0148 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3577 2.1322 0.0747 28 1 2.6331 1.3958 -0.9249 29 1 1.5796 0.3322 2.3424 30 1 2.9602 1.0293 3.2236 31 1 -0.1028 1.4881 5.3324 32 1 3.5627 -0.6584 0.8600 33 1 4.6275 0.2912 1.9242 34 1 3.7274 -0.4683 -1.5525 35 1 5.1635 0.0779 -3.4767 36 1 7.0072 1.1100 -4.3946 37 1 7.7144 2.3539 -0.9267 38 1 6.2726 1.8162 0.9956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428832506.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:12 Heat of formation + Delta-G solvation = -53.910937 kcal Electronic energy + Delta-G solvation = -21464.063914 eV Core-core repulsion = 17942.564252 eV Total energy + Delta-G solvation = -3521.499662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.08774 -47.07685 -39.54386 -37.19291 -33.08080 -32.83458 -31.41372 -30.99374 -27.95616 -26.71691 -25.18080 -23.41940 -22.72207 -21.15401 -20.79592 -18.84723 -17.55709 -17.42358 -17.30626 -16.30341 -15.51334 -15.19854 -15.03467 -14.49891 -14.44706 -14.23234 -14.02307 -13.70387 -13.45866 -13.42661 -13.06225 -12.60986 -12.48988 -12.17638 -11.79709 -11.51294 -11.18515 -11.00658 -10.97627 -10.85627 -10.74556 -10.59411 -10.46200 -9.95756 -9.29436 -8.94681 -8.84317 -8.66225 -8.41662 -7.29402 -6.02471 -4.03408 1.14300 1.40586 2.86052 3.32842 3.37115 3.40061 3.61684 3.65472 4.04354 4.42723 4.43799 4.88862 4.93640 4.95031 5.00627 5.19801 5.33265 5.45316 5.48846 5.51344 5.65679 5.81020 5.85144 6.03929 6.08581 6.18489 6.31634 6.37197 6.39651 6.62271 6.76264 6.93848 7.12396 7.21073 7.30681 7.40664 7.79283 8.04597 8.15238 8.51175 9.03876 9.60464 11.08084 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.024960 B = 0.003743 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.509691 B = 7478.860850 C = 7857.798503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.183 4.183 3 C 0.086 3.914 4 N -0.522 5.522 5 C 0.191 3.809 6 C -0.503 4.503 7 H 0.061 0.939 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.080 3.920 15 C -0.036 4.036 16 C -0.119 4.119 17 C -0.089 4.089 18 C -0.184 4.184 19 C 0.315 3.685 20 F -0.202 7.202 21 F -0.203 7.203 22 C -0.081 4.081 23 C -0.102 4.102 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.007 0.993 30 H 0.023 0.977 31 H 0.261 0.739 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.961 -3.888 -14.850 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.202 4.202 3 C -0.042 4.042 4 N -0.245 5.245 5 C 0.066 3.934 6 C -0.542 4.542 7 H 0.079 0.921 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.047 4.047 15 C -0.036 4.036 16 C -0.137 4.137 17 C -0.107 4.107 18 C -0.185 4.185 19 C 0.261 3.739 20 F -0.183 7.183 21 F -0.185 7.185 22 C -0.099 4.099 23 C -0.120 4.120 24 H 0.115 0.885 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.025 0.975 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.141 -3.448 -14.640 18.140 hybrid contribution -0.960 0.009 0.392 1.037 sum 9.181 -3.439 -14.248 17.295 Atomic orbital electron populations 1.23702 0.96053 1.01157 1.00422 1.23503 0.96716 0.99643 1.00363 1.21312 0.94660 0.94429 0.93764 1.62484 1.13039 1.44622 1.04342 1.19797 0.92333 0.97175 0.84097 1.21066 1.23029 0.99687 1.10401 0.92066 1.24949 0.97001 0.96328 0.96135 1.69943 1.38404 1.29634 1.15849 0.86606 0.80051 0.83514 0.77512 1.20319 1.21412 1.20193 1.21144 0.93898 0.94497 0.95206 1.20175 0.94252 0.94165 0.95051 1.21087 0.99567 1.00914 0.92145 1.20815 0.93606 0.97105 0.99166 1.20201 0.98818 1.04567 0.94875 1.20382 0.79310 0.76261 0.97943 1.93010 1.96545 1.32267 1.96465 1.92999 1.41485 1.87884 1.96088 1.20916 0.99218 0.97983 0.91790 1.21092 0.94317 0.97462 0.99152 0.88456 0.89694 0.88739 0.89821 0.91772 0.97544 0.95852 0.92941 0.94318 0.90238 0.85548 0.85732 0.86827 0.85853 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 14.32 29.01 0.42 -2.60 16 2 C -0.18 -3.17 7.40 -36.03 -0.27 -3.43 16 3 C 0.09 1.60 5.34 -4.97 -0.03 1.57 16 4 N -0.52 -10.65 4.66 -238.96 -1.11 -11.77 16 5 C 0.19 4.76 4.56 -4.98 -0.02 4.74 16 6 C -0.50 -13.78 8.52 -34.44 -0.29 -14.07 16 7 H 0.06 1.68 7.57 -52.48 -0.40 1.28 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 10 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.08 1.36 4.97 -4.98 -0.02 1.33 16 15 C -0.04 -0.52 4.88 -104.63 -0.51 -1.03 16 16 C -0.12 -1.50 7.90 -39.58 -0.31 -1.81 16 17 C -0.09 -0.97 9.67 -39.58 -0.38 -1.36 16 18 C -0.18 -2.15 5.37 -104.62 -0.56 -2.71 16 19 C 0.31 3.16 5.45 36.01 0.20 3.35 16 20 F -0.20 -2.41 17.26 2.25 0.04 -2.37 16 21 F -0.20 -2.32 17.26 2.25 0.04 -2.29 16 22 C -0.08 -1.04 9.60 -39.59 -0.38 -1.42 16 23 C -0.10 -1.42 9.70 -39.58 -0.38 -1.80 16 24 H 0.10 1.73 7.84 -52.48 -0.41 1.32 16 25 H 0.08 1.31 8.06 -52.49 -0.42 0.88 16 26 H 0.09 1.52 6.84 -52.49 -0.36 1.16 16 27 H 0.08 1.72 6.96 -51.93 -0.36 1.36 16 28 H 0.06 1.06 5.81 -51.93 -0.30 0.76 16 29 H 0.01 0.18 6.70 -51.93 -0.35 -0.17 16 30 H 0.02 0.63 7.84 -51.93 -0.41 0.22 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.04 0.63 6.34 -51.93 -0.33 0.30 16 33 H 0.08 1.34 7.82 -51.93 -0.41 0.94 16 34 H 0.13 1.48 7.98 -52.49 -0.42 1.06 16 35 H 0.12 0.98 7.95 -52.49 -0.42 0.56 16 36 H 0.11 0.73 7.88 -51.93 -0.41 0.33 16 37 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 38 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 326.47 15.07 4.92 4.92 Total: -1.00 -29.82 326.47 -8.02 -37.84 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -4.97 Total: 0.51 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -2.65 Total: -17.75 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.38 Total: -37.30 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.08 Total: -4.66 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.82 -8.02 -37.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428832506.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.069 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds