Wall clock time and date at job start Tue Mar 31 2020 06:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00153 * 2 1 4 4 N 1.46911 * 109.46906 * 124.16449 * 3 2 1 5 5 C 1.46901 * 110.99600 * 301.34370 * 4 3 2 6 6 C 1.50700 * 109.47173 * 289.41384 * 5 4 3 7 7 H 1.08007 * 120.00118 * 355.26722 * 6 5 4 8 8 C 1.37880 * 120.00303 * 175.26616 * 6 5 4 9 9 N 1.31511 * 119.99577 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99915 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47217 * 60.00455 * 10 8 6 12 12 H 1.48503 * 109.46870 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47257 * 299.99846 * 10 8 6 14 14 C 1.46902 * 111.00078 * 65.29432 * 4 3 2 15 15 C 1.50694 * 109.46740 * 66.04631 * 14 4 3 16 16 C 1.38236 * 120.00196 * 269.72352 * 15 14 4 17 17 C 1.38232 * 120.00222 * 179.76995 * 16 15 14 18 18 C 1.38244 * 119.99598 * 0.48598 * 17 16 15 19 19 C 1.50703 * 119.99647 * 179.76977 * 18 17 16 20 20 F 1.39895 * 109.46993 * 120.02307 * 19 18 17 21 21 F 1.39898 * 109.47066 * 240.02207 * 19 18 17 22 22 C 1.38229 * 119.99930 * 359.78986 * 18 17 16 23 23 C 1.38227 * 120.00350 * 359.95817 * 22 18 17 24 24 H 1.08009 * 119.99550 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.00337 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00087 * 180.02562 * 2 1 3 27 27 H 1.08993 * 109.47423 * 4.16875 * 3 2 1 28 28 H 1.09000 * 109.47271 * 244.15935 * 3 2 1 29 29 H 1.09002 * 109.47757 * 49.41746 * 5 4 3 30 30 H 1.09003 * 109.46672 * 169.42163 * 5 4 3 31 31 H 0.97000 * 119.99821 * 180.02562 * 9 8 6 32 32 H 1.09000 * 109.47040 * 306.04748 * 14 4 3 33 33 H 1.08996 * 109.47187 * 186.04716 * 14 4 3 34 34 H 1.07998 * 119.99841 * 359.97438 * 16 15 14 35 35 H 1.07997 * 120.00566 * 180.25533 * 17 16 15 36 36 H 1.09003 * 109.47399 * 0.02562 * 19 18 17 37 37 H 1.08007 * 119.99913 * 179.97438 * 22 18 17 38 38 H 1.08002 * 120.00330 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9820 1.3402 1.1461 5 6 2.2510 1.1881 2.4112 6 6 1.4492 2.4352 2.6811 7 1 1.5383 3.2874 2.0236 8 6 0.6018 2.4884 3.7675 9 7 0.4936 1.4509 4.5684 10 14 -0.3926 4.0340 4.1015 11 1 -1.2776 4.3135 2.9423 12 1 -1.2199 3.8368 5.3189 13 1 0.5286 5.1802 4.3088 14 6 4.0266 0.3156 1.0152 15 6 4.9086 0.6451 -0.1614 16 6 4.6002 0.1529 -1.4157 17 6 5.4067 0.4590 -2.4959 18 6 6.5272 1.2493 -2.3198 19 6 7.4093 1.5788 -3.4964 20 9 7.4517 2.9659 -3.6734 21 9 8.7019 1.0993 -3.2589 22 6 6.8387 1.7368 -1.0644 23 6 6.0294 1.4350 0.0148 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3577 2.1322 0.0747 28 1 2.6331 1.3958 -0.9249 29 1 1.5796 0.3322 2.3424 30 1 2.9602 1.0293 3.2236 31 1 -0.1028 1.4881 5.3324 32 1 3.5627 -0.6584 0.8600 33 1 4.6275 0.2912 1.9242 34 1 3.7274 -0.4683 -1.5525 35 1 5.1635 0.0779 -3.4767 36 1 7.0072 1.1100 -4.3946 37 1 7.7144 2.3539 -0.9267 38 1 6.2726 1.8162 0.9956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428832506.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:09 Heat of formation + Delta-G solvation = -70.151847 kcal Electronic energy + Delta-G solvation = -21464.768173 eV Core-core repulsion = 17942.564252 eV Total energy + Delta-G solvation = -3522.203921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -49.91041 -47.91433 -40.63480 -38.64961 -34.87226 -34.28183 -32.83190 -31.96479 -29.51800 -28.22775 -26.55032 -24.88927 -23.75103 -22.69281 -21.97378 -20.28736 -18.45456 -18.33272 -18.23928 -18.12964 -17.02639 -16.54995 -16.32325 -16.13502 -15.71445 -15.37762 -15.16540 -14.87412 -14.55836 -14.34623 -14.30431 -14.01893 -13.68483 -13.59046 -13.14623 -13.02312 -12.85713 -12.57757 -12.45479 -12.26353 -12.15485 -11.98294 -11.95290 -11.71800 -11.25564 -10.58315 -10.20585 -9.86960 -9.82012 -8.94312 -8.16373 -6.25100 0.13983 0.43843 1.41089 1.43082 1.47141 1.50947 2.41103 2.63694 2.83554 3.16413 3.32281 3.53307 3.65728 3.88802 3.99946 4.07480 4.10280 4.14954 4.29162 4.45513 4.46779 4.57277 4.68411 4.74986 4.91211 4.99202 5.07324 5.12364 5.23968 5.29522 5.39124 5.40531 5.66797 5.69173 5.74320 5.92272 5.95609 6.11554 6.38321 6.63661 6.90445 7.43758 8.93501 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.024960 B = 0.003743 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.509691 B = 7478.860850 C = 7857.798503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.186 4.186 3 C 0.091 3.909 4 N -0.532 5.532 5 C 0.208 3.792 6 C -0.516 4.516 7 H 0.056 0.944 8 C 0.008 3.992 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.272 1.272 14 C 0.085 3.915 15 C -0.053 4.053 16 C -0.122 4.122 17 C -0.077 4.077 18 C -0.185 4.185 19 C 0.313 3.687 20 F -0.214 7.214 21 F -0.213 7.213 22 C -0.092 4.092 23 C -0.117 4.117 24 H 0.086 0.914 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.058 0.942 28 H 0.088 0.912 29 H -0.014 1.014 30 H -0.004 1.004 31 H 0.263 0.737 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.139 0.861 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.128 0.872 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.994 -4.018 -17.218 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.206 4.206 3 C -0.037 4.037 4 N -0.254 5.254 5 C 0.082 3.918 6 C -0.554 4.554 7 H 0.074 0.926 8 C -0.191 4.191 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.197 1.197 14 C -0.042 4.042 15 C -0.054 4.054 16 C -0.140 4.140 17 C -0.095 4.095 18 C -0.186 4.186 19 C 0.260 3.740 20 F -0.196 7.196 21 F -0.194 7.194 22 C -0.110 4.110 23 C -0.135 4.135 24 H 0.104 0.896 25 H 0.124 0.876 26 H 0.129 0.871 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.004 0.996 30 H 0.014 0.986 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.157 0.843 35 H 0.184 0.816 36 H 0.179 0.821 37 H 0.146 0.854 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.190 -3.576 -17.030 20.165 hybrid contribution -0.895 0.028 1.083 1.405 sum 9.295 -3.548 -15.947 18.796 Atomic orbital electron populations 1.23847 0.96215 1.01665 1.00041 1.23522 0.96836 0.99602 1.00638 1.21244 0.94295 0.94315 0.93807 1.62324 1.13452 1.46564 1.03101 1.19397 0.91275 0.95478 0.85671 1.21354 1.23380 1.00309 1.10375 0.92596 1.25761 0.98076 0.99335 0.95883 1.70061 1.39228 1.31615 1.16366 0.85589 0.78626 0.79729 0.77607 1.19351 1.20941 1.19685 1.21086 0.93063 0.93835 0.96249 1.19978 0.94432 0.95947 0.95044 1.21258 1.00294 1.00776 0.91674 1.21211 0.92252 0.95653 1.00394 1.20536 0.99262 1.03839 0.94979 1.20805 0.78593 0.75768 0.98858 1.92987 1.96549 1.33551 1.96490 1.92983 1.42273 1.87918 1.96241 1.21062 0.99315 0.98357 0.92254 1.21104 0.94866 0.98075 0.99475 0.89598 0.87637 0.87072 0.92367 0.89395 0.99644 0.98637 0.92856 0.93639 0.91372 0.84340 0.81592 0.82119 0.85367 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.05 14.32 67.78 0.97 -5.08 16 2 C -0.19 -6.31 7.40 25.65 0.19 -6.12 16 3 C 0.09 3.35 5.34 85.55 0.46 3.81 16 4 N -0.53 -22.11 4.66 -909.93 -4.24 -26.34 16 5 C 0.21 10.74 4.56 85.56 0.39 11.13 16 6 C -0.52 -28.87 8.52 25.60 0.22 -28.66 16 7 H 0.06 3.12 7.57 -2.91 -0.02 3.10 16 8 C 0.01 0.42 5.46 84.66 0.46 0.89 16 9 N -0.93 -55.47 13.29 21.45 0.28 -55.18 16 10 Si 0.96 44.25 29.54 68.60 2.03 46.27 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 14 C 0.09 2.91 4.97 85.55 0.42 3.33 16 15 C -0.05 -1.52 4.88 -19.87 -0.10 -1.62 16 16 C -0.12 -2.77 7.90 22.27 0.18 -2.59 16 17 C -0.08 -1.40 9.67 22.27 0.22 -1.18 16 18 C -0.19 -3.81 5.37 -19.86 -0.11 -3.92 16 19 C 0.31 5.21 5.45 71.24 0.39 5.60 16 20 F -0.21 -4.61 17.26 44.97 0.78 -3.83 16 21 F -0.21 -4.33 17.26 44.97 0.78 -3.56 16 22 C -0.09 -2.25 9.60 22.26 0.21 -2.04 16 23 C -0.12 -3.26 9.70 22.27 0.22 -3.04 16 24 H 0.09 3.06 7.84 -2.91 -0.02 3.04 16 25 H 0.11 3.08 8.06 -2.91 -0.02 3.06 16 26 H 0.11 3.39 6.84 -2.91 -0.02 3.37 16 27 H 0.06 2.42 6.96 -2.39 -0.02 2.40 16 28 H 0.09 2.79 5.81 -2.39 -0.01 2.78 16 29 H -0.01 -0.78 6.70 -2.39 -0.02 -0.80 16 30 H 0.00 -0.25 7.84 -2.39 -0.02 -0.27 16 31 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 32 H 0.05 1.47 6.34 -2.39 -0.02 1.46 16 33 H 0.07 2.42 7.82 -2.39 -0.02 2.40 16 34 H 0.14 2.80 7.98 -2.91 -0.02 2.78 16 35 H 0.17 1.62 7.95 -2.91 -0.02 1.60 16 36 H 0.16 1.23 7.88 -2.39 -0.02 1.21 16 37 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 38 H 0.12 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -65.27 326.47 4.79 -60.48 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.05 Total: 11.65 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 4.12 Total: -29.49 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -3.95 Total: -81.53 kcal Atomic # 9 Polarization: -8.94 SS G_CDS: 1.55 Total: -7.39 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -65.27 4.79 -60.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428832506.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.672 kcal (2) G-P(sol) polarization free energy of solvation -65.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds