Wall clock time and date at job start Tue Mar 31 2020 06:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50701 * 119.99902 * 2 1 4 4 N 1.46905 * 109.47189 * 123.08958 * 3 2 1 5 5 C 1.46894 * 111.00128 * 63.18524 * 4 3 2 6 6 C 1.50702 * 109.47108 * 66.04856 * 5 4 3 7 7 H 1.08001 * 120.00099 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00206 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99846 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00196 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47547 * 59.99578 * 10 8 6 12 12 H 1.48494 * 109.47235 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46986 * 299.99953 * 10 8 6 14 14 C 1.46898 * 110.99486 * 299.23115 * 4 3 2 15 15 C 1.50696 * 109.47642 * 287.97177 * 14 4 3 16 16 C 1.38256 * 119.99998 * 272.34571 * 15 14 4 17 17 C 1.38215 * 119.99792 * 179.97438 * 16 15 14 18 18 C 1.38254 * 120.00487 * 0.13167 * 17 16 15 19 19 C 1.38215 * 119.99467 * 359.95711 * 18 17 16 20 20 C 1.50704 * 120.00099 * 179.97438 * 19 18 17 21 21 F 1.39905 * 109.46814 * 29.97835 * 20 19 18 22 22 F 1.39898 * 109.47460 * 149.97486 * 20 19 18 23 23 C 1.38215 * 120.00099 * 92.43070 * 15 14 4 24 24 H 1.08003 * 120.00305 * 179.97438 * 1 2 3 25 25 H 1.08003 * 119.99968 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.00259 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47663 * 3.08486 * 3 2 1 28 28 H 1.09009 * 109.47320 * 243.08326 * 3 2 1 29 29 H 1.09005 * 109.47228 * 186.04432 * 5 4 3 30 30 H 1.09001 * 109.47586 * 306.05002 * 5 4 3 31 31 H 0.97006 * 119.99771 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.46621 * 167.97186 * 14 4 3 33 33 H 1.09001 * 109.47472 * 47.97665 * 14 4 3 34 34 H 1.08004 * 120.00261 * 0.06187 * 16 15 14 35 35 H 1.08005 * 119.99595 * 180.11026 * 17 16 15 36 36 H 1.07994 * 120.00756 * 179.97438 * 18 17 16 37 37 H 1.09001 * 109.47536 * 269.98351 * 20 19 18 38 38 H 1.08000 * 119.99891 * 0.27834 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9631 1.3512 1.1604 5 6 3.9794 0.2936 1.0808 6 6 4.8904 0.5594 -0.0899 7 1 4.7307 1.4275 -0.7122 8 6 5.9286 -0.3050 -0.3658 9 7 6.1241 -1.3612 0.3930 10 14 7.0582 0.0249 -1.8164 11 1 7.7245 1.3397 -1.6361 12 1 8.0856 -1.0443 -1.8970 13 1 6.2622 0.0412 -3.0700 14 6 2.2069 1.2612 2.4166 15 6 1.4653 2.5521 2.6501 16 6 2.0849 3.5951 3.3133 17 6 1.4049 4.7792 3.5270 18 6 0.1041 4.9199 3.0801 19 6 -0.5159 3.8765 2.4188 20 6 -1.9339 4.0295 1.9320 21 9 -2.1791 5.3721 1.6245 22 9 -2.1211 3.2472 0.7874 23 6 0.1651 2.6928 2.2029 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3565 2.1329 0.0553 28 1 2.6480 1.3872 -0.9164 29 1 4.5641 0.2815 2.0007 30 1 3.4902 -0.6715 0.9486 31 1 6.8543 -1.9696 0.1987 32 1 2.8951 1.0829 3.2429 33 1 1.4941 0.4390 2.3536 34 1 3.1008 3.4850 3.6631 35 1 1.8896 5.5946 4.0436 36 1 -0.4274 5.8449 3.2475 37 1 -2.6228 3.7037 2.7114 38 1 -0.3209 1.8760 1.6901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428840784.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:17 Heat of formation + Delta-G solvation = -54.040583 kcal Electronic energy + Delta-G solvation = -21900.771938 eV Core-core repulsion = 18379.266654 eV Total energy + Delta-G solvation = -3521.505284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.07795 -47.09636 -39.48484 -37.18897 -32.99890 -32.82075 -31.67205 -31.08787 -27.20208 -26.41340 -26.03121 -23.85470 -22.13855 -21.32708 -20.56232 -18.94024 -17.57020 -17.27009 -17.14194 -16.31737 -15.82670 -15.25071 -15.12242 -14.79083 -14.37299 -13.96834 -13.79123 -13.74061 -13.53382 -13.17795 -12.99487 -12.82316 -12.33631 -12.13980 -11.94098 -11.39427 -11.28450 -11.18127 -10.88130 -10.80755 -10.71351 -10.62157 -10.42321 -9.88327 -9.33459 -8.93485 -8.88757 -8.64548 -8.44373 -7.28678 -6.05043 -4.06172 1.22181 1.41705 2.71564 3.32739 3.36762 3.39931 3.59040 3.75086 4.09773 4.41701 4.49208 4.79103 4.97128 5.02352 5.13506 5.22488 5.31548 5.44729 5.47699 5.58449 5.70273 5.74423 5.93924 6.04744 6.09967 6.20668 6.37493 6.41215 6.46807 6.61839 6.78282 6.98247 7.05313 7.09416 7.32364 7.33253 7.76838 8.03550 8.14021 8.49581 9.00748 9.58043 11.05598 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.023142 B = 0.004335 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.647548 B = 6457.445976 C = 6929.166168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.159 4.159 3 C 0.083 3.917 4 N -0.522 5.522 5 C 0.190 3.810 6 C -0.507 4.507 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.084 3.916 15 C -0.058 4.058 16 C -0.080 4.080 17 C -0.123 4.123 18 C -0.098 4.098 19 C -0.176 4.176 20 C 0.315 3.685 21 F -0.203 7.203 22 F -0.199 7.199 23 C -0.086 4.086 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.029 0.971 30 H -0.002 1.002 31 H 0.262 0.738 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.645 8.993 6.553 18.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.178 4.178 3 C -0.045 4.045 4 N -0.245 5.245 5 C 0.066 3.934 6 C -0.545 4.545 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.044 4.044 15 C -0.059 4.059 16 C -0.099 4.099 17 C -0.141 4.141 18 C -0.116 4.116 19 C -0.177 4.177 20 C 0.261 3.739 21 F -0.184 7.184 22 F -0.180 7.180 23 C -0.105 4.105 24 H 0.106 0.894 25 H 0.111 0.889 26 H 0.130 0.870 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.047 0.953 30 H 0.016 0.984 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.248 9.295 6.536 18.224 hybrid contribution 0.258 -0.721 -0.931 1.205 sum -13.990 8.574 5.606 17.340 Atomic orbital electron populations 1.23752 0.95994 1.00935 1.04759 1.23907 0.96192 1.01516 0.96232 1.21336 0.94410 0.92462 0.96263 1.62429 1.12628 1.50551 0.98853 1.19800 0.88503 0.87197 0.97948 1.21098 1.12168 1.09144 1.12119 0.91950 1.24957 0.97594 0.95072 0.96814 1.69944 1.31464 1.13644 1.38796 0.86579 0.80355 0.77836 0.82769 1.20168 1.21381 1.20280 1.21088 0.96238 0.91973 0.95130 1.19987 0.93131 0.96792 0.95952 1.21251 0.99693 0.92354 0.96596 1.21100 0.94365 0.97902 1.00769 1.20797 0.95469 0.97592 0.97748 1.20301 0.95411 0.97071 1.04936 1.20298 0.95708 0.73183 0.84706 1.92980 1.95464 1.35636 1.94301 1.93001 1.96313 1.74490 1.54240 1.20992 0.94635 0.96717 0.98147 0.89365 0.88945 0.86970 0.92113 0.89044 0.95260 0.98382 0.92877 0.90349 0.94090 0.85317 0.85676 0.85724 0.86487 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.29 13.44 29.02 0.39 -2.90 16 2 C -0.16 -2.85 7.43 -36.02 -0.27 -3.12 16 3 C 0.08 1.61 5.39 -4.97 -0.03 1.58 16 4 N -0.52 -10.82 4.65 -238.96 -1.11 -11.93 16 5 C 0.19 4.74 4.55 -4.98 -0.02 4.71 16 6 C -0.51 -13.84 8.47 -34.44 -0.29 -14.13 16 7 H 0.06 1.70 7.12 -52.49 -0.37 1.33 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 10 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.08 1.45 4.98 -4.98 -0.02 1.43 16 15 C -0.06 -0.88 4.99 -104.63 -0.52 -1.40 16 16 C -0.08 -1.11 9.71 -39.58 -0.38 -1.50 16 17 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 18 C -0.10 -1.14 9.40 -39.58 -0.37 -1.51 16 19 C -0.18 -2.19 5.74 -104.62 -0.60 -2.79 16 20 C 0.31 3.36 5.65 36.01 0.20 3.56 16 21 F -0.20 -2.37 16.48 2.25 0.04 -2.34 16 22 F -0.20 -2.53 16.49 2.25 0.04 -2.49 16 23 C -0.09 -1.21 7.62 -39.58 -0.30 -1.51 16 24 H 0.09 1.21 8.06 -52.48 -0.42 0.79 16 25 H 0.09 1.33 6.56 -52.48 -0.34 0.99 16 26 H 0.11 2.24 6.80 -52.49 -0.36 1.88 16 27 H 0.06 1.10 6.09 -51.93 -0.32 0.78 16 28 H 0.09 1.94 6.78 -51.92 -0.35 1.59 16 29 H 0.03 0.78 7.86 -51.93 -0.41 0.37 16 30 H 0.00 -0.04 6.31 -51.93 -0.33 -0.37 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.08 1.35 7.77 -51.93 -0.40 0.94 16 33 H 0.04 0.70 6.66 -51.93 -0.35 0.36 16 34 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 35 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 36 H 0.12 1.20 7.60 -52.49 -0.40 0.80 16 37 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.13 1.81 5.29 -52.49 -0.28 1.54 16 LS Contribution 320.09 15.07 4.82 4.82 Total: -1.00 -29.27 320.09 -7.94 -37.22 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -4.73 Total: 1.65 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -2.72 Total: -17.94 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: -0.37 Total: -37.34 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.07 Total: -4.83 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.27 -7.94 -37.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428840784.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.823 kcal (2) G-P(sol) polarization free energy of solvation -29.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds