Wall clock time and date at job start Tue Mar 31 2020 06:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50701 * 119.99902 * 2 1 4 4 N 1.46905 * 109.47189 * 123.08958 * 3 2 1 5 5 C 1.46894 * 111.00128 * 63.18524 * 4 3 2 6 6 C 1.50702 * 109.47108 * 66.04856 * 5 4 3 7 7 H 1.08001 * 120.00099 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00206 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99846 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00196 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47547 * 59.99578 * 10 8 6 12 12 H 1.48494 * 109.47235 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46986 * 299.99953 * 10 8 6 14 14 C 1.46898 * 110.99486 * 299.23115 * 4 3 2 15 15 C 1.50696 * 109.47642 * 287.97177 * 14 4 3 16 16 C 1.38256 * 119.99998 * 272.34571 * 15 14 4 17 17 C 1.38215 * 119.99792 * 179.97438 * 16 15 14 18 18 C 1.38254 * 120.00487 * 0.13167 * 17 16 15 19 19 C 1.38215 * 119.99467 * 359.95711 * 18 17 16 20 20 C 1.50704 * 120.00099 * 179.97438 * 19 18 17 21 21 F 1.39905 * 109.46814 * 29.97835 * 20 19 18 22 22 F 1.39898 * 109.47460 * 149.97486 * 20 19 18 23 23 C 1.38215 * 120.00099 * 92.43070 * 15 14 4 24 24 H 1.08003 * 120.00305 * 179.97438 * 1 2 3 25 25 H 1.08003 * 119.99968 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.00259 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47663 * 3.08486 * 3 2 1 28 28 H 1.09009 * 109.47320 * 243.08326 * 3 2 1 29 29 H 1.09005 * 109.47228 * 186.04432 * 5 4 3 30 30 H 1.09001 * 109.47586 * 306.05002 * 5 4 3 31 31 H 0.97006 * 119.99771 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.46621 * 167.97186 * 14 4 3 33 33 H 1.09001 * 109.47472 * 47.97665 * 14 4 3 34 34 H 1.08004 * 120.00261 * 0.06187 * 16 15 14 35 35 H 1.08005 * 119.99595 * 180.11026 * 17 16 15 36 36 H 1.07994 * 120.00756 * 179.97438 * 18 17 16 37 37 H 1.09001 * 109.47536 * 269.98351 * 20 19 18 38 38 H 1.08000 * 119.99891 * 0.27834 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9631 1.3512 1.1604 5 6 3.9794 0.2936 1.0808 6 6 4.8904 0.5594 -0.0899 7 1 4.7307 1.4275 -0.7122 8 6 5.9286 -0.3050 -0.3658 9 7 6.1241 -1.3612 0.3930 10 14 7.0582 0.0249 -1.8164 11 1 7.7245 1.3397 -1.6361 12 1 8.0856 -1.0443 -1.8970 13 1 6.2622 0.0412 -3.0700 14 6 2.2069 1.2612 2.4166 15 6 1.4653 2.5521 2.6501 16 6 2.0849 3.5951 3.3133 17 6 1.4049 4.7792 3.5270 18 6 0.1041 4.9199 3.0801 19 6 -0.5159 3.8765 2.4188 20 6 -1.9339 4.0295 1.9320 21 9 -2.1791 5.3721 1.6245 22 9 -2.1211 3.2472 0.7874 23 6 0.1651 2.6928 2.2029 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3565 2.1329 0.0553 28 1 2.6480 1.3872 -0.9164 29 1 4.5641 0.2815 2.0007 30 1 3.4902 -0.6715 0.9486 31 1 6.8543 -1.9696 0.1987 32 1 2.8951 1.0829 3.2429 33 1 1.4941 0.4390 2.3536 34 1 3.1008 3.4850 3.6631 35 1 1.8896 5.5946 4.0436 36 1 -0.4274 5.8449 3.2475 37 1 -2.6228 3.7037 2.7114 38 1 -0.3209 1.8760 1.6901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428840784.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:16 Heat of formation + Delta-G solvation = -70.060634 kcal Electronic energy + Delta-G solvation = -21901.466620 eV Core-core repulsion = 18379.266654 eV Total energy + Delta-G solvation = -3522.199966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.93880 -47.96882 -40.61153 -38.66831 -34.94554 -34.16231 -32.86278 -32.35533 -29.05626 -27.76609 -27.00774 -25.59512 -23.30315 -22.77705 -21.74824 -20.41692 -18.44643 -18.37356 -18.19478 -18.01478 -16.90960 -16.81786 -16.63909 -16.26471 -15.66602 -15.45788 -15.05101 -14.79336 -14.62904 -14.39897 -14.08925 -13.95921 -13.89631 -13.43296 -13.22934 -12.99820 -12.76170 -12.60282 -12.57837 -12.44046 -12.19301 -12.08169 -11.78115 -11.64615 -11.28527 -10.61230 -10.30911 -9.88886 -9.73483 -8.97646 -8.19229 -6.28174 0.22045 0.39273 1.35110 1.40825 1.43066 1.50954 2.40115 2.61942 2.88042 3.13631 3.30094 3.48777 3.64621 3.89236 4.01881 4.05625 4.13597 4.19191 4.23391 4.38246 4.49370 4.58659 4.68978 4.71295 4.90922 4.95903 5.05730 5.09183 5.23294 5.31012 5.40578 5.47895 5.62618 5.69789 5.71074 5.79845 5.97469 6.08035 6.32543 6.62598 6.86790 7.40808 8.91170 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.023142 B = 0.004335 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.647548 B = 6457.445976 C = 6929.166168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.189 4.189 3 C 0.092 3.908 4 N -0.530 5.530 5 C 0.207 3.793 6 C -0.520 4.520 7 H 0.058 0.942 8 C 0.006 3.994 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.270 1.270 14 C 0.089 3.911 15 C -0.077 4.077 16 C -0.095 4.095 17 C -0.118 4.118 18 C -0.093 4.093 19 C -0.178 4.178 20 C 0.313 3.687 21 F -0.208 7.208 22 F -0.212 7.212 23 C -0.094 4.094 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.002 0.998 30 H -0.024 1.024 31 H 0.264 0.736 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.125 0.875 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.161 0.839 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.437 10.790 6.469 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.209 4.209 3 C -0.035 4.035 4 N -0.252 5.252 5 C 0.082 3.918 6 C -0.559 4.559 7 H 0.077 0.923 8 C -0.192 4.192 9 N -0.573 5.573 10 Si 0.788 3.212 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.195 1.195 14 C -0.038 4.038 15 C -0.077 4.077 16 C -0.114 4.114 17 C -0.136 4.136 18 C -0.111 4.111 19 C -0.179 4.179 20 C 0.260 3.740 21 F -0.189 7.189 22 F -0.193 7.193 23 C -0.112 4.112 24 H 0.128 0.872 25 H 0.126 0.874 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.021 0.979 30 H -0.006 1.006 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.143 0.857 35 H 0.171 0.829 36 H 0.168 0.832 37 H 0.178 0.822 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.060 11.107 6.454 20.565 hybrid contribution 0.701 -1.225 -0.841 1.643 sum -15.359 9.881 5.614 19.106 Atomic orbital electron populations 1.23951 0.94700 1.02602 1.00000 1.23548 0.97111 0.99602 1.00647 1.21182 0.94042 0.93848 0.94445 1.62310 1.13377 1.48574 1.00950 1.19405 0.89045 0.87532 0.95865 1.21397 1.12761 1.08989 1.12721 0.92339 1.25806 0.99125 0.94768 0.99519 1.70067 1.32187 1.14567 1.40510 0.85529 0.78328 0.77902 0.79427 1.19453 1.20815 1.19519 1.21021 0.95882 0.93837 0.93092 1.19776 0.93860 0.96042 0.98057 1.21354 0.99917 0.93063 0.97020 1.21398 0.94506 0.97619 1.00063 1.21151 0.95308 0.98198 0.96436 1.20536 0.96404 0.96480 1.04474 1.20667 0.95488 0.72782 0.85052 1.92970 1.95402 1.36139 1.94399 1.92974 1.96307 1.74848 1.55210 1.20959 0.94197 0.97585 0.98501 0.87242 0.87399 0.89754 0.90523 0.91760 0.97943 1.00588 0.92753 0.91191 0.94105 0.85677 0.82932 0.83164 0.82222 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.02 13.44 67.79 0.91 -4.11 16 2 C -0.19 -6.92 7.43 25.66 0.19 -6.73 16 3 C 0.09 3.66 5.39 85.56 0.46 4.13 16 4 N -0.53 -22.85 4.65 -909.93 -4.23 -27.08 16 5 C 0.21 10.93 4.55 85.56 0.39 11.32 16 6 C -0.52 -29.47 8.47 25.60 0.22 -29.25 16 7 H 0.06 3.29 7.12 -2.91 -0.02 3.27 16 8 C 0.01 0.34 5.46 84.65 0.46 0.80 16 9 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 10 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 14 C 0.09 3.21 4.98 85.56 0.43 3.63 16 15 C -0.08 -2.30 4.99 -19.87 -0.10 -2.40 16 16 C -0.09 -2.55 9.71 22.27 0.22 -2.34 16 17 C -0.12 -2.49 10.05 22.27 0.22 -2.27 16 18 C -0.09 -1.85 9.40 22.27 0.21 -1.64 16 19 C -0.18 -3.91 5.74 -19.86 -0.11 -4.03 16 20 C 0.31 5.60 5.65 71.24 0.40 6.00 16 21 F -0.21 -4.17 16.48 44.97 0.74 -3.43 16 22 F -0.21 -4.78 16.49 44.97 0.74 -4.04 16 23 C -0.09 -2.48 7.62 22.27 0.17 -2.31 16 24 H 0.11 2.72 8.06 -2.91 -0.02 2.70 16 25 H 0.11 2.82 6.56 -2.91 -0.02 2.80 16 26 H 0.08 3.56 6.80 -2.91 -0.02 3.54 16 27 H 0.08 2.75 6.09 -2.39 -0.01 2.74 16 28 H 0.06 2.84 6.78 -2.38 -0.02 2.83 16 29 H 0.00 0.14 7.86 -2.38 -0.02 0.12 16 30 H -0.02 -1.32 6.31 -2.39 -0.02 -1.34 16 31 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 32 H 0.07 2.55 7.77 -2.39 -0.02 2.54 16 33 H 0.04 1.44 6.66 -2.39 -0.02 1.43 16 34 H 0.13 3.36 8.06 -2.91 -0.02 3.33 16 35 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 36 H 0.15 2.23 7.60 -2.91 -0.02 2.21 16 37 H 0.16 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.13 3.35 5.29 -2.91 -0.02 3.33 16 Total: -1.00 -64.79 320.09 4.69 -60.09 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 1.06 Total: 12.66 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 4.07 Total: -29.19 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -3.94 Total: -82.68 kcal Atomic # 9 Polarization: -8.95 SS G_CDS: 1.48 Total: -7.46 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -64.79 4.69 -60.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428840784.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.967 kcal (2) G-P(sol) polarization free energy of solvation -64.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds