Wall clock time and date at job start Tue Mar 31 2020 06:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99957 * 2 1 4 4 N 1.46897 * 109.46988 * 124.12650 * 3 2 1 5 5 C 1.46904 * 111.00522 * 299.20198 * 4 3 2 6 6 C 1.50698 * 109.47137 * 288.13187 * 5 4 3 7 7 H 1.07999 * 119.99638 * 354.71497 * 6 5 4 8 8 C 1.37876 * 120.00021 * 174.71311 * 6 5 4 9 9 N 1.31515 * 119.99981 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99937 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46638 * 90.00221 * 10 8 6 12 12 H 1.48493 * 109.47297 * 210.00286 * 10 8 6 13 13 H 1.48496 * 109.47086 * 330.00668 * 10 8 6 14 14 C 1.46902 * 110.99821 * 63.15404 * 4 3 2 15 15 C 1.53002 * 109.46780 * 66.04694 * 14 4 3 16 16 C 1.50699 * 109.47016 * 179.97438 * 15 14 4 17 17 C 1.38260 * 119.96569 * 269.97563 * 16 15 14 18 18 C 1.38213 * 120.07047 * 180.02562 * 17 16 15 19 19 C 1.38410 * 120.00260 * 0.02562 * 18 17 16 20 20 F 1.35096 * 120.03454 * 180.27217 * 19 18 17 21 21 C 1.38649 * 119.92823 * 0.02562 * 19 18 17 22 22 F 1.35095 * 120.03840 * 180.02562 * 21 19 18 23 23 C 1.38211 * 119.96561 * 90.00118 * 16 15 14 24 24 H 1.07997 * 120.00550 * 179.97438 * 1 2 3 25 25 H 1.07999 * 119.99997 * 359.97438 * 1 2 3 26 26 H 1.07994 * 119.99578 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47386 * 4.13144 * 3 2 1 28 28 H 1.08992 * 109.47005 * 244.12954 * 3 2 1 29 29 H 1.08998 * 109.46611 * 48.12851 * 5 4 3 30 30 H 1.08998 * 109.47420 * 168.12396 * 5 4 3 31 31 H 0.96996 * 119.99865 * 179.97438 * 9 8 6 32 32 H 1.08995 * 109.47653 * 306.04914 * 14 4 3 33 33 H 1.09003 * 109.47100 * 186.03894 * 14 4 3 34 34 H 1.09002 * 109.47434 * 60.00018 * 15 14 4 35 35 H 1.08999 * 109.47383 * 300.00004 * 15 14 4 36 36 H 1.07996 * 119.96536 * 0.02562 * 17 16 15 37 37 H 1.07999 * 119.99998 * 180.02562 * 18 17 16 38 38 H 1.07998 * 120.00055 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9812 1.3406 1.1465 5 6 2.2449 1.2400 2.4137 6 6 1.5046 2.5277 2.6682 7 1 1.6412 3.3691 2.0050 8 6 0.6530 2.6316 3.7475 9 7 0.4872 1.6070 4.5553 10 14 -0.2641 4.2280 4.0634 11 1 -1.5681 4.1985 3.3535 12 1 -0.4976 4.3846 5.5214 13 1 0.5444 5.3700 3.5660 14 6 3.9957 0.2833 1.0417 15 6 4.9019 0.5633 -0.1588 16 6 5.9430 -0.5210 -0.2660 17 6 7.1540 -0.3825 0.3865 18 6 8.1106 -1.3754 0.2893 19 6 7.8569 -2.5096 -0.4623 20 9 8.7893 -3.4830 -0.5533 21 6 6.6429 -2.6481 -1.1175 22 9 6.3927 -3.7544 -1.8513 23 6 5.6864 -1.6526 -1.0169 24 1 -0.5401 -0.9352 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3575 2.1323 0.0740 28 1 2.6335 1.3955 -0.9246 29 1 1.5328 0.4169 2.3556 30 1 2.9461 1.0569 3.2278 31 1 -0.1116 1.6803 5.3148 32 1 3.5039 -0.6803 0.9087 33 1 4.5947 0.2630 1.9521 34 1 5.3938 1.5269 -0.0259 35 1 4.3030 0.5837 -1.0693 36 1 7.3528 0.5024 0.9728 37 1 9.0560 -1.2662 0.7998 38 1 4.7400 -1.7597 -1.5261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428853474.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:06 Heat of formation + Delta-G solvation = -46.705959 kcal Electronic energy + Delta-G solvation = -21237.451413 eV Core-core repulsion = 17716.264182 eV Total energy + Delta-G solvation = -3521.187231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.58022 -48.65864 -39.40719 -37.48140 -33.41857 -32.83295 -31.60916 -30.93067 -28.45336 -26.71307 -25.15143 -23.44997 -22.93707 -21.25534 -20.83300 -18.70702 -18.03846 -17.28614 -17.03134 -16.42490 -16.21874 -15.45255 -15.08360 -15.01083 -14.63319 -14.49113 -14.27638 -14.04768 -13.86171 -13.36867 -13.06609 -12.51889 -12.46651 -12.18117 -11.88948 -11.56152 -11.37763 -11.11411 -10.96583 -10.73886 -10.66323 -10.48008 -10.45174 -9.93180 -9.31628 -9.19533 -8.76106 -8.67119 -8.41919 -7.28375 -6.01931 -4.03073 0.76797 0.84178 2.85815 3.20210 3.30735 3.37516 3.41289 3.64003 4.18026 4.36206 4.41897 4.54380 4.83766 4.97606 5.12733 5.30217 5.33582 5.48700 5.57110 5.59235 5.64995 5.67856 5.80174 5.86154 5.95761 6.07587 6.11168 6.37880 6.39419 6.46101 6.60021 6.66091 7.13445 7.23152 7.31186 7.42622 7.80871 8.07280 8.16546 8.52958 9.04886 9.60952 11.08577 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.027066 B = 0.003474 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.250022 B = 8058.182549 C = 8572.598741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.183 4.183 3 C 0.087 3.913 4 N -0.529 5.529 5 C 0.190 3.810 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.057 3.943 15 C -0.081 4.081 16 C -0.049 4.049 17 C -0.096 4.096 18 C -0.123 4.123 19 C 0.053 3.947 20 F -0.134 7.134 21 C 0.068 3.932 22 F -0.132 7.132 23 C -0.125 4.125 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.006 0.994 30 H 0.022 0.978 31 H 0.260 0.740 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.627 -5.737 -11.008 17.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.203 4.203 3 C -0.041 4.041 4 N -0.252 5.252 5 C 0.065 3.935 6 C -0.542 4.542 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.722 3.278 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.071 4.071 15 C -0.119 4.119 16 C -0.050 4.050 17 C -0.114 4.114 18 C -0.142 4.142 19 C 0.033 3.967 20 F -0.112 7.112 21 C 0.048 3.952 22 F -0.110 7.110 23 C -0.144 4.144 24 H 0.103 0.897 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.024 0.976 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.816 -5.397 -10.853 16.928 hybrid contribution -0.893 -0.608 0.264 1.112 sum 10.923 -6.005 -10.589 16.355 Atomic orbital electron populations 1.23715 0.96095 1.01160 1.00586 1.23546 0.96714 0.99830 1.00195 1.21295 0.94745 0.94398 0.93651 1.62422 1.14712 1.43718 1.04335 1.19772 0.92245 0.97240 0.84228 1.21124 1.24115 0.98372 1.10575 0.91979 1.24967 0.96906 0.96495 0.96154 1.69957 1.37798 1.30169 1.15881 0.86556 0.80052 0.83892 0.77269 1.20802 1.21338 1.19785 1.22033 0.94253 0.93967 0.96885 1.20752 0.94937 0.96050 1.00144 1.19991 0.95409 0.95066 0.94504 1.21109 0.92307 0.99169 0.98846 1.21091 1.01521 0.92312 0.99245 1.17684 0.86888 0.89069 1.03022 1.91509 1.63748 1.60973 1.94997 1.17688 0.94451 0.86054 0.97026 1.91517 1.94398 1.50378 1.74747 1.21042 0.99215 0.92811 1.01338 0.89733 0.88446 0.88670 0.89777 0.91926 0.97604 0.95977 0.93013 0.95330 0.91210 0.89456 0.90515 0.83875 0.83772 0.83767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 14.32 29.01 0.42 -2.63 16 2 C -0.18 -3.16 7.45 -36.03 -0.27 -3.42 16 3 C 0.09 1.55 5.46 -4.98 -0.03 1.52 16 4 N -0.53 -10.44 4.66 -237.52 -1.11 -11.55 16 5 C 0.19 4.72 4.59 -4.98 -0.02 4.70 16 6 C -0.50 -13.65 8.51 -34.44 -0.29 -13.95 16 7 H 0.06 1.67 7.67 -52.49 -0.40 1.27 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 10 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 14 C 0.06 0.92 4.77 -3.82 -0.02 0.90 16 15 C -0.08 -0.99 5.27 -27.88 -0.15 -1.14 16 16 C -0.05 -0.54 5.13 -104.62 -0.54 -1.08 16 17 C -0.10 -0.95 9.70 -39.58 -0.38 -1.34 16 18 C -0.12 -1.20 10.02 -39.53 -0.40 -1.59 16 19 C 0.05 0.62 7.31 -39.37 -0.29 0.34 16 20 F -0.13 -1.67 17.18 2.25 0.04 -1.63 16 21 C 0.07 0.83 7.31 -39.36 -0.29 0.54 16 22 F -0.13 -1.72 17.18 2.25 0.04 -1.69 16 23 C -0.13 -1.41 9.68 -39.53 -0.38 -1.79 16 24 H 0.08 1.31 8.06 -52.49 -0.42 0.89 16 25 H 0.10 1.71 7.84 -52.49 -0.41 1.30 16 26 H 0.10 1.54 6.77 -52.49 -0.36 1.19 16 27 H 0.08 1.66 7.02 -51.93 -0.36 1.29 16 28 H 0.06 0.94 6.33 -51.93 -0.33 0.61 16 29 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 30 H 0.02 0.59 7.81 -51.93 -0.41 0.19 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 32 H 0.03 0.47 6.29 -51.93 -0.33 0.14 16 33 H 0.07 1.15 7.86 -51.93 -0.41 0.74 16 34 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 35 H 0.08 0.89 6.43 -51.93 -0.33 0.56 16 36 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 327.54 15.07 4.94 4.94 Total: -1.00 -29.33 327.54 -8.04 -37.37 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -4.93 Total: -0.66 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -2.73 Total: -17.49 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.37 Total: -37.07 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.08 Total: -3.32 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.33 -8.04 -37.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428853474.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.333 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds