Wall clock time and date at job start Tue Mar 31 2020 07:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34220 * 117.00165 * 2 1 4 4 O 1.20833 * 120.00063 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00012 * 180.27523 * 3 2 1 6 6 N 1.46499 * 109.47212 * 179.72191 * 5 3 2 7 7 C 1.36813 * 120.00317 * 264.17681 * 6 5 3 8 8 H 1.08003 * 120.00162 * 201.86317 * 7 6 5 9 9 C 1.39074 * 120.00067 * 21.86084 * 7 6 5 10 10 N 1.31343 * 119.99886 * 9.20467 * 9 7 6 11 11 Si 1.86805 * 119.99866 * 189.20536 * 9 7 6 12 12 H 1.48495 * 109.47309 * 89.99996 * 11 9 7 13 13 H 1.48506 * 109.46676 * 210.00054 * 11 9 7 14 14 H 1.48497 * 109.47010 * 329.99646 * 11 9 7 15 15 C 1.34775 * 119.99717 * 84.17594 * 6 5 3 16 16 O 1.21668 * 120.00142 * 5.53670 * 15 6 5 17 17 C 1.46949 * 120.00149 * 185.54234 * 15 6 5 18 18 C 1.31692 * 118.11799 * 76.91516 * 17 15 6 19 19 C 1.50090 * 123.77734 * 180.14815 * 18 17 15 20 20 C 1.53007 * 110.19276 * 343.31288 * 19 18 17 21 21 H 1.09001 * 109.62688 * 289.85247 * 20 19 18 22 22 C 1.53000 * 109.79300 * 169.36975 * 20 19 18 23 23 C 1.53359 * 108.51473 * 49.56255 * 20 19 18 24 24 C 1.50097 * 118.11217 * 257.18132 * 17 15 6 25 25 H 1.09005 * 109.46535 * 300.00149 * 1 2 3 26 26 H 1.08996 * 109.47160 * 59.99208 * 1 2 3 27 27 H 1.08994 * 109.47200 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47077 * 299.72734 * 5 3 2 29 29 H 1.08998 * 109.46515 * 59.72612 * 5 3 2 30 30 H 0.97001 * 120.00121 * 180.02562 * 10 9 7 31 31 H 1.08003 * 118.10675 * 0.41793 * 18 17 15 32 32 H 1.09002 * 109.49674 * 222.98625 * 19 18 17 33 33 H 1.09004 * 109.05638 * 103.36259 * 19 18 17 34 34 H 1.09004 * 109.46888 * 300.87960 * 22 20 19 35 35 H 1.08997 * 109.47201 * 60.87852 * 22 20 19 36 36 H 1.08995 * 109.47078 * 180.87929 * 22 20 19 37 37 H 1.08991 * 109.63093 * 172.22042 * 23 20 19 38 38 H 1.09002 * 109.62603 * 51.63196 * 23 20 19 39 39 H 1.09006 * 109.35940 * 283.02583 * 24 17 15 40 40 H 1.08993 * 109.36544 * 42.62109 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0063 6 7 3.9818 2.6796 -0.0117 7 6 4.2863 3.2984 -1.1933 8 1 4.9116 4.1790 -1.1962 9 6 3.7907 2.7935 -2.3906 10 7 2.8894 1.8382 -2.3775 11 14 4.4070 3.4740 -4.0175 12 1 5.5884 2.6935 -4.4648 13 1 3.3313 3.3714 -5.0362 14 1 4.7909 4.8980 -3.8447 15 6 4.0640 3.3624 1.1474 16 8 3.8916 2.7875 2.2057 17 6 4.3616 4.8014 1.1329 18 6 3.3929 5.6323 0.8081 19 6 3.5568 7.1231 0.7498 20 6 4.8229 7.5449 1.4982 21 1 4.6805 7.4003 2.5691 22 6 5.1262 9.0175 1.2144 23 6 5.9888 6.6756 1.0114 24 6 5.7539 5.2392 1.4833 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.9597 0.7829 0.8834 29 1 3.9524 0.7783 -0.8965 30 1 2.5440 1.4857 -3.2126 31 1 2.4236 5.2173 0.5744 32 1 2.6907 7.6024 1.2060 33 1 3.6334 7.4321 -0.2927 34 1 5.2612 9.1605 0.1422 35 1 4.2961 9.6328 1.5613 36 1 6.0373 9.3081 1.7373 37 1 6.9236 7.0499 1.4285 38 1 6.0344 6.7005 -0.0774 39 1 5.8878 5.1874 2.5639 40 1 6.4730 4.5780 1.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455704881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:42 Heat of formation + Delta-G solvation = -111.452862 kcal Electronic energy + Delta-G solvation = -23288.510582 eV Core-core repulsion = 19875.603230 eV Total energy + Delta-G solvation = -3412.907352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.57855 -38.78477 -37.42387 -35.36618 -34.54368 -32.36394 -31.47807 -30.34863 -28.57708 -26.80344 -25.99097 -24.51637 -22.72515 -21.34809 -20.31720 -19.41349 -18.15769 -16.73632 -16.55059 -16.20448 -15.41840 -15.20676 -14.67878 -14.35448 -14.13040 -14.07830 -13.57569 -13.43643 -12.91407 -12.58968 -12.41619 -12.28687 -12.19215 -11.89162 -11.62908 -11.52236 -11.30293 -11.27972 -11.19212 -10.80744 -10.57533 -10.51845 -10.39462 -10.22708 -9.86808 -9.79850 -9.55398 -9.01267 -8.57987 -8.09511 -7.90440 -6.46195 -4.01725 2.74742 3.09019 3.17808 3.20815 3.53447 3.74342 4.00712 4.11140 4.72127 4.98582 5.03588 5.05309 5.18548 5.60001 5.70122 5.71534 5.79316 5.79759 5.82527 5.90350 5.95827 5.97334 6.01082 6.13290 6.22235 6.26768 6.31185 6.34280 6.42148 6.45217 6.64287 6.69219 6.78793 7.24001 7.37006 7.49293 7.57592 7.63899 8.29121 8.99254 9.13764 9.37288 9.77780 10.60718 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015962 B = 0.006801 C = 0.005487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.791631 B = 4116.013724 C = 5101.920666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.489 3.511 4 O -0.506 6.506 5 C 0.156 3.844 6 N -0.424 5.424 7 C -0.319 4.319 8 H 0.103 0.897 9 C 0.035 3.965 10 N -0.882 5.882 11 Si 0.930 3.070 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.504 3.496 16 O -0.602 6.602 17 C -0.116 4.116 18 C -0.124 4.124 19 C -0.078 4.078 20 C -0.094 4.094 21 H 0.070 0.930 22 C -0.144 4.144 23 C -0.111 4.111 24 C -0.070 4.070 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.129 0.871 30 H 0.272 0.728 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 5.126 1.787 5.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.292 6.292 3 C 0.331 3.669 4 O -0.391 6.391 5 C 0.030 3.970 6 N -0.142 5.142 7 C -0.446 4.446 8 H 0.120 0.880 9 C -0.168 4.168 10 N -0.521 5.521 11 Si 0.757 3.243 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.194 1.194 15 C 0.294 3.706 16 O -0.489 6.489 17 C -0.118 4.118 18 C -0.143 4.143 19 C -0.115 4.115 20 C -0.113 4.113 21 H 0.089 0.911 22 C -0.202 4.202 23 C -0.148 4.148 24 C -0.108 4.108 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.146 0.854 30 H 0.083 0.917 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.117 5.022 2.123 5.848 hybrid contribution -0.305 0.244 -1.182 1.244 sum 1.812 5.265 0.942 5.647 Atomic orbital electron populations 1.22921 0.78829 1.01755 1.01558 1.86455 1.21569 1.35519 1.85692 1.23918 0.92274 0.80485 0.70243 1.90495 1.66584 1.36431 1.45611 1.20503 0.87111 0.85762 1.03629 1.43332 1.56837 1.07891 1.06107 1.19624 1.29526 1.13002 0.82469 0.87971 1.25289 0.94793 0.96735 0.99981 1.69633 1.26735 1.27548 1.28185 0.85863 0.78191 0.79356 0.80906 1.20256 1.20969 1.19373 1.18494 0.81252 0.87056 0.83790 1.90645 1.56829 1.70226 1.31177 1.20432 0.95910 0.93288 1.02215 1.22317 0.99175 0.94030 0.98777 1.20460 0.97223 0.93259 1.00527 1.21204 0.95458 0.94406 1.00217 0.91134 1.21818 1.00978 0.95850 1.01533 1.21641 0.97352 0.94549 1.01263 1.20226 0.93635 0.95990 1.00903 0.93226 0.92682 0.89635 0.90356 0.85354 0.91699 0.87328 0.91522 0.90790 0.92721 0.92949 0.92931 0.92008 0.91517 0.91130 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.56 101.05 1.07 1.85 16 2 O -0.37 -8.30 10.56 -39.23 -0.41 -8.71 16 3 C 0.49 12.40 6.02 36.01 0.22 12.62 16 4 O -0.51 -14.23 15.74 -18.76 -0.30 -14.53 16 5 C 0.16 3.83 5.18 -5.19 -0.03 3.80 16 6 N -0.42 -10.85 2.17 -117.49 -0.25 -11.10 16 7 C -0.32 -8.00 8.87 -15.02 -0.13 -8.14 16 8 H 0.10 2.47 6.96 -52.48 -0.37 2.10 16 9 C 0.04 0.88 5.13 -17.45 -0.09 0.79 16 10 N -0.88 -22.82 8.76 55.50 0.49 -22.33 16 11 Si 0.93 19.51 29.56 -169.99 -5.03 14.48 16 12 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 13 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 15 C 0.50 12.79 6.55 -12.73 -0.08 12.70 16 16 O -0.60 -16.72 16.75 5.22 0.09 -16.64 16 17 C -0.12 -2.46 3.92 -103.26 -0.41 -2.87 16 18 C -0.12 -2.50 9.23 -36.48 -0.34 -2.84 16 19 C -0.08 -1.20 5.43 -28.17 -0.15 -1.36 16 20 C -0.09 -1.28 2.76 -90.43 -0.25 -1.53 16 21 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 22 C -0.14 -1.57 9.21 37.16 0.34 -1.23 16 23 C -0.11 -1.57 5.29 -26.54 -0.14 -1.71 16 24 C -0.07 -1.22 5.79 -28.17 -0.16 -1.38 16 25 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 26 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 27 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.08 1.83 7.53 -51.93 -0.39 1.44 16 29 H 0.13 3.13 6.37 -51.93 -0.33 2.80 16 30 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.11 2.51 7.95 -52.48 -0.42 2.09 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.11 8.11 -51.93 -0.42 0.69 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 331.68 15.07 5.00 5.00 Total: -1.00 -31.28 331.68 -6.70 -37.99 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.13 Total: 5.11 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -0.16 Total: 10.74 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.23 Total: -33.43 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.62 Total: -39.88 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.28 -6.70 -37.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455704881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.468 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds