Wall clock time and date at job start Tue Mar 31 2020 07:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34229 * 117.00122 * 2 1 4 4 O 1.20828 * 120.00004 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00288 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.47370 * 180.02562 * 5 3 2 7 7 C 1.36816 * 120.00221 * 83.90795 * 6 5 3 8 8 H 1.07996 * 120.00053 * 311.77650 * 7 6 5 9 9 C 1.39077 * 120.00058 * 131.50280 * 7 6 5 10 10 N 1.31352 * 119.99634 * 337.22488 * 9 7 6 11 11 Si 1.86797 * 119.99843 * 157.23521 * 9 7 6 12 12 H 1.48498 * 109.47276 * 89.99752 * 11 9 7 13 13 H 1.48504 * 109.46582 * 209.99536 * 11 9 7 14 14 H 1.48504 * 109.47377 * 329.99128 * 11 9 7 15 15 C 1.34781 * 120.00271 * 263.91034 * 6 5 3 16 16 O 1.21655 * 120.00230 * 177.43086 * 15 6 5 17 17 C 1.46955 * 119.99536 * 357.42694 * 15 6 5 18 18 C 1.31696 * 118.11131 * 96.07411 * 17 15 6 19 19 C 1.50096 * 123.77224 * 179.34870 * 18 17 15 20 20 C 1.53006 * 110.07645 * 17.61693 * 19 18 17 21 21 H 1.09004 * 109.63047 * 69.74922 * 20 19 18 22 22 C 1.53002 * 109.79141 * 190.23659 * 20 19 18 23 23 C 1.53366 * 108.51713 * 310.04100 * 20 19 18 24 24 C 1.50093 * 118.11607 * 276.33588 * 17 15 6 25 25 H 1.09002 * 109.47101 * 59.99539 * 1 2 3 26 26 H 1.09000 * 109.46902 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46993 * 299.99473 * 1 2 3 28 28 H 1.09004 * 109.46915 * 60.00666 * 5 3 2 29 29 H 1.08997 * 109.47286 * 300.00823 * 5 3 2 30 30 H 0.97001 * 119.99131 * 185.06417 * 10 9 7 31 31 H 1.08006 * 118.11007 * 359.57625 * 18 17 15 32 32 H 1.09002 * 109.54244 * 257.33662 * 19 18 17 33 33 H 1.08996 * 109.12840 * 137.63870 * 19 18 17 34 34 H 1.09001 * 109.47077 * 179.12005 * 22 20 19 35 35 H 1.08990 * 109.47594 * 299.12168 * 22 20 19 36 36 H 1.09004 * 109.46865 * 59.12479 * 22 20 19 37 37 H 1.09000 * 109.62910 * 308.36731 * 23 20 19 38 38 H 1.09000 * 109.63102 * 187.77926 * 23 20 19 39 39 H 1.08994 * 109.36226 * 317.34828 * 24 17 15 40 40 H 1.09004 * 109.35825 * 77.08510 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.0546 3.3711 1.1794 8 1 3.2335 3.3325 1.8799 9 6 5.1885 4.1191 1.4777 10 7 6.3335 3.8347 0.9003 11 14 5.0832 5.5280 2.6998 12 1 5.3624 5.0195 4.0667 13 1 6.0827 6.5672 2.3443 14 1 3.7207 6.1174 2.6595 15 6 4.2919 3.2912 -1.1593 16 8 4.5916 4.4702 -1.1644 17 6 4.2682 2.5335 -2.4182 18 6 3.1817 2.5961 -3.1598 19 6 3.0257 1.8860 -4.4729 20 6 4.0742 0.7789 -4.5992 21 1 3.8443 -0.0247 -3.8995 22 6 4.0795 0.2308 -6.0276 23 6 5.4500 1.3712 -4.2696 24 6 5.4814 1.7282 -2.7820 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 3.9563 0.7807 -0.8892 29 1 3.9557 0.7809 0.8907 30 1 7.1392 4.3073 1.1620 31 1 2.3568 3.1957 -2.8042 32 1 3.1512 2.5974 -5.2892 33 1 2.0292 1.4476 -4.5257 34 1 4.8387 -0.5464 -6.1158 35 1 3.1008 -0.1894 -6.2592 36 1 4.3028 1.0378 -6.7256 37 1 5.6144 2.2691 -4.8652 38 1 6.2261 0.6372 -4.4865 39 1 6.3784 2.3096 -2.5690 40 1 5.4965 0.8113 -2.1926 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455704882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:46 Heat of formation + Delta-G solvation = -108.462539 kcal Electronic energy + Delta-G solvation = -23339.798286 eV Core-core repulsion = 19927.020605 eV Total energy + Delta-G solvation = -3412.777682 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.00881 -39.01571 -37.41178 -35.90203 -34.09872 -32.64891 -31.59129 -30.48117 -28.49978 -26.97578 -26.33210 -24.36705 -22.85482 -21.44590 -20.73576 -19.67760 -17.88351 -17.11884 -16.81200 -16.27660 -15.94626 -15.40095 -14.77415 -14.33826 -14.24224 -14.11062 -13.54937 -13.45193 -13.20711 -13.02785 -12.70447 -12.32646 -12.16600 -11.95639 -11.81841 -11.76078 -11.52216 -11.27746 -11.17291 -10.83047 -10.64382 -10.52687 -10.40167 -10.29940 -10.21460 -9.98409 -9.92793 -8.73576 -8.52835 -8.09342 -7.29447 -6.21365 -3.92978 2.53443 2.83497 3.10259 3.29591 3.40840 3.47664 4.10514 4.38222 4.81728 4.89322 4.94791 5.08796 5.19398 5.31033 5.37287 5.42575 5.51838 5.61473 5.65363 5.66221 5.71237 5.74760 5.79700 5.84257 5.90829 6.00695 6.09382 6.16774 6.19134 6.29810 6.38488 6.46854 6.58558 6.83091 7.00330 7.37957 7.63892 8.21515 8.39623 8.96771 9.06681 9.53788 10.15111 10.88733 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.007291 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.247607 B = 3839.300298 C = 5218.717868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.436 3.564 4 O -0.490 6.490 5 C 0.117 3.883 6 N -0.429 5.429 7 C -0.353 4.353 8 H 0.076 0.924 9 C 0.081 3.919 10 N -0.841 5.841 11 Si 0.915 3.085 12 H -0.281 1.281 13 H -0.283 1.283 14 H -0.269 1.269 15 C 0.527 3.473 16 O -0.535 6.535 17 C -0.128 4.128 18 C -0.146 4.146 19 C -0.077 4.077 20 C -0.095 4.095 21 H 0.072 0.928 22 C -0.144 4.144 23 C -0.112 4.112 24 C -0.075 4.075 25 H 0.057 0.943 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.267 0.733 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.007 -11.354 -8.438 15.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.276 3.724 4 O -0.375 6.375 5 C -0.010 4.010 6 N -0.151 5.151 7 C -0.480 4.480 8 H 0.094 0.906 9 C -0.130 4.130 10 N -0.473 5.473 11 Si 0.742 3.258 12 H -0.207 1.207 13 H -0.209 1.209 14 H -0.194 1.194 15 C 0.315 3.685 16 O -0.412 6.412 17 C -0.131 4.131 18 C -0.165 4.165 19 C -0.114 4.114 20 C -0.113 4.113 21 H 0.091 0.909 22 C -0.202 4.202 23 C -0.149 4.149 24 C -0.112 4.112 25 H 0.075 0.925 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.129 0.871 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.884 -10.307 -8.486 14.216 hybrid contribution -0.315 0.753 0.695 1.072 sum -5.199 -9.554 -7.791 13.379 Atomic orbital electron populations 1.23106 0.77858 1.02722 1.02133 1.86534 1.22385 1.34792 1.84963 1.25356 0.93624 0.81015 0.72371 1.90651 1.66785 1.36267 1.43815 1.21098 0.85492 0.89602 1.04816 1.42873 1.60542 1.05730 1.05949 1.18877 1.01901 1.30196 0.96977 0.90589 1.25305 0.94093 0.97425 0.96141 1.69798 0.98462 1.38668 1.40408 0.86176 0.78593 0.81825 0.79246 1.20736 1.20850 1.19380 1.18266 0.80686 0.86874 0.82659 1.90641 1.49047 1.15957 1.85601 1.21149 0.95926 0.98936 0.97114 1.22373 0.97383 1.00570 0.96191 1.20445 0.98731 0.96768 0.95425 1.21218 0.95602 0.97565 0.96943 0.90927 1.21814 1.01361 1.00689 0.96313 1.21664 0.96385 1.00592 0.96267 1.20332 0.96422 0.98903 0.95564 0.92466 0.88817 0.92374 0.88326 0.87147 0.92317 0.87805 0.91020 0.91430 0.92748 0.92905 0.92803 0.91800 0.91714 0.90134 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.52 16 2 O -0.37 -5.99 10.56 -39.25 -0.41 -6.41 16 3 C 0.44 8.62 7.99 36.00 0.29 8.91 16 4 O -0.49 -11.41 16.05 -18.75 -0.30 -11.71 16 5 C 0.12 2.36 5.93 -5.20 -0.03 2.33 16 6 N -0.43 -11.02 2.00 -117.50 -0.23 -11.26 16 7 C -0.35 -10.01 8.86 -15.02 -0.13 -10.14 16 8 H 0.08 2.16 7.93 -52.49 -0.42 1.75 16 9 C 0.08 2.31 4.27 -17.45 -0.07 2.24 16 10 N -0.84 -24.52 12.56 55.50 0.70 -23.82 16 11 Si 0.92 22.56 29.62 -169.99 -5.03 17.53 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 15 C 0.53 13.85 6.12 -12.73 -0.08 13.77 16 16 O -0.53 -16.55 15.58 5.23 0.08 -16.47 16 17 C -0.13 -2.62 3.80 -103.26 -0.39 -3.01 16 18 C -0.15 -2.68 9.50 -36.48 -0.35 -3.03 16 19 C -0.08 -1.05 5.44 -28.17 -0.15 -1.20 16 20 C -0.09 -1.15 2.76 -90.43 -0.25 -1.40 16 21 H 0.07 0.89 8.12 -51.93 -0.42 0.46 16 22 C -0.14 -1.40 9.20 37.16 0.34 -1.06 16 23 C -0.11 -1.50 5.30 -26.54 -0.14 -1.64 16 24 C -0.07 -1.29 5.68 -28.17 -0.16 -1.45 16 25 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 28 H 0.10 1.74 5.44 -51.93 -0.28 1.46 16 29 H 0.11 2.08 8.09 -51.93 -0.42 1.66 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.10 2.12 7.95 -52.48 -0.42 1.70 16 32 H 0.07 0.93 8.11 -51.93 -0.42 0.51 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.07 1.18 7.04 -51.93 -0.37 0.81 16 LS Contribution 335.45 15.07 5.06 5.06 Total: -1.00 -35.04 335.45 -6.32 -41.35 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.10 Total: -0.11 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -0.06 Total: 5.84 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.46 Total: -35.08 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.63 Total: -34.59 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.03 Total: 17.53 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.04 -6.32 -41.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455704882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.109 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds