Wall clock time and date at job start Tue Mar 31 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34901 * 116.99747 * 2 1 4 4 O 1.21622 * 119.99863 * 0.02562 * 3 2 1 5 5 C 1.46469 * 119.99998 * 180.02562 * 3 2 1 6 6 O 1.34933 * 125.99679 * 0.02562 * 5 3 2 7 7 C 1.33916 * 109.38322 * 179.97438 * 6 5 3 8 8 C 1.35169 * 108.77994 * 0.23222 * 7 6 5 9 9 C 1.36647 * 125.99768 * 179.97438 * 5 3 2 10 10 C 1.50701 * 126.64610 * 0.02562 * 9 5 3 11 11 N 1.46897 * 109.47325 * 79.99473 * 10 9 5 12 12 C 1.46906 * 110.99845 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.46901 * 180.02562 * 12 11 10 14 14 C 1.53005 * 109.47058 * 299.99868 * 13 12 11 15 15 C 1.53006 * 109.47282 * 59.99606 * 13 12 11 16 16 C 1.50699 * 109.47126 * 179.97438 * 13 12 11 17 17 H 1.08003 * 119.99719 * 0.02562 * 16 13 12 18 18 C 1.37879 * 119.99863 * 179.97438 * 16 13 12 19 19 N 1.31507 * 120.00208 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 119.99776 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.47242 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47362 * 120.00052 * 20 18 16 23 23 H 1.48500 * 109.47114 * 240.00548 * 20 18 16 24 24 H 1.08999 * 109.47459 * 299.99745 * 1 2 3 25 25 H 1.08996 * 109.47810 * 60.00125 * 1 2 3 26 26 H 1.09010 * 109.46795 * 180.02562 * 1 2 3 27 27 H 1.08002 * 125.60797 * 179.97438 * 7 6 5 28 28 H 1.08000 * 126.43944 * 179.76700 * 8 7 6 29 29 H 1.08998 * 109.46965 * 199.99701 * 10 9 5 30 30 H 1.09006 * 109.46721 * 319.99517 * 10 9 5 31 31 H 1.00905 * 110.99974 * 303.95007 * 11 10 9 32 32 H 1.08996 * 109.46723 * 299.99489 * 12 11 10 33 33 H 1.08991 * 109.47151 * 60.00101 * 12 11 10 34 34 H 1.08998 * 109.47064 * 60.00194 * 14 13 12 35 35 H 1.09003 * 109.47052 * 179.97438 * 14 13 12 36 36 H 1.08998 * 109.47261 * 299.99749 * 14 13 12 37 37 H 1.09006 * 109.46717 * 60.00234 * 15 13 12 38 38 H 1.08997 * 109.46902 * 179.97438 * 15 13 12 39 39 H 1.08998 * 109.47444 * 300.00176 * 15 13 12 40 40 H 0.97002 * 119.99934 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0643 1.2020 0.0000 4 8 1.4019 2.2220 0.0005 5 6 3.5270 1.2787 -0.0006 6 8 4.3762 0.2301 -0.0016 7 6 5.6376 0.6797 -0.0024 8 6 5.6179 2.0312 0.0033 9 6 4.2711 2.4248 -0.0011 10 6 3.7469 3.8377 -0.0007 11 7 3.3519 4.2131 1.3634 12 6 2.8341 5.5873 1.4022 13 6 2.4347 5.9415 2.8361 14 6 1.3511 4.9744 3.3173 15 6 3.6582 5.8314 3.7483 16 6 1.9041 7.3514 2.8761 17 1 1.8562 7.9362 1.9693 18 6 1.4789 7.8944 4.0700 19 7 1.5369 7.1821 5.1739 20 14 0.8206 9.6418 4.1194 21 1 0.8603 10.2246 2.7540 22 1 -0.5802 9.6294 4.6122 23 1 1.6589 10.4611 5.0311 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 6.5247 0.0637 -0.0029 28 1 6.4773 2.6853 0.0077 29 1 4.5256 4.5142 -0.3527 30 1 2.8819 3.9044 -0.6608 31 1 2.6772 3.5621 1.7366 32 1 3.6063 6.2762 1.0599 33 1 1.9629 5.6657 0.7521 34 1 1.7353 3.9548 3.2885 35 1 1.0669 5.2264 4.3390 36 1 0.4795 5.0528 2.6676 37 1 4.4301 6.5204 3.4055 38 1 3.3737 6.0842 4.7697 39 1 4.0424 4.8118 3.7195 40 1 1.2374 7.5640 6.0138 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459684294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:21 Heat of formation + Delta-G solvation = -67.903121 kcal Electronic energy + Delta-G solvation = -22514.698727 eV Core-core repulsion = 19103.679834 eV Total energy + Delta-G solvation = -3411.018893 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.82172 -40.20737 -37.13884 -36.47260 -34.62171 -32.64833 -30.93546 -30.19960 -27.86533 -25.99878 -25.47851 -25.12729 -23.56685 -22.71460 -21.61009 -19.97032 -18.49145 -18.23327 -17.06607 -16.84001 -16.22019 -15.82816 -15.72502 -15.05091 -14.57043 -14.11686 -13.88335 -13.54881 -13.29810 -13.15507 -12.95140 -12.41679 -12.28387 -12.11232 -11.96780 -11.55214 -11.08981 -10.95829 -10.93074 -10.77080 -10.56987 -10.50771 -10.09818 -10.05358 -9.88431 -9.30569 -9.03462 -8.81886 -8.54244 -8.23610 -7.62181 -5.85517 -3.95475 0.76793 2.20071 2.23896 2.81384 2.98360 3.34092 3.42112 3.46116 4.48446 4.54672 4.64360 4.81704 4.97744 5.08258 5.16644 5.37678 5.39305 5.39909 5.52294 5.63770 5.91458 6.04585 6.17279 6.22922 6.41229 6.52634 6.74275 6.80575 6.98385 7.16029 7.26378 7.44954 7.53458 7.58161 7.79091 7.82814 7.89026 8.04590 8.28183 8.41061 8.62538 9.06115 9.69052 11.15131 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022478 B = 0.004280 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.372464 B = 6541.203276 C = 7258.590995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.352 6.352 3 C 0.548 3.452 4 O -0.475 6.475 5 C -0.076 4.076 6 O -0.154 6.154 7 C 0.002 3.998 8 C -0.210 4.210 9 C -0.050 4.050 10 C 0.111 3.889 11 N -0.675 5.675 12 C 0.076 3.924 13 C 0.068 3.932 14 C -0.130 4.130 15 C -0.118 4.118 16 C -0.503 4.503 17 H 0.052 0.948 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.888 3.112 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.285 1.285 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.213 0.787 28 H 0.161 0.839 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.340 0.660 32 H 0.056 0.944 33 H 0.016 0.984 34 H 0.008 0.992 35 H 0.082 0.918 36 H 0.020 0.980 37 H 0.018 0.982 38 H 0.073 0.927 39 H 0.019 0.981 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.776 -15.415 -10.894 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.269 6.269 3 C 0.393 3.607 4 O -0.363 6.363 5 C -0.126 4.126 6 O -0.049 6.049 7 C -0.068 4.068 8 C -0.229 4.229 9 C -0.053 4.053 10 C -0.018 4.018 11 N -0.308 5.308 12 C -0.052 4.052 13 C 0.068 3.932 14 C -0.188 4.188 15 C -0.176 4.176 16 C -0.542 4.542 17 H 0.071 0.929 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.717 3.283 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.212 1.212 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.121 0.879 27 H 0.230 0.770 28 H 0.179 0.821 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.160 0.840 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.027 0.973 35 H 0.101 0.899 36 H 0.039 0.961 37 H 0.037 0.963 38 H 0.092 0.908 39 H 0.038 0.962 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.999 -15.204 -10.518 19.152 hybrid contribution -1.228 0.975 -0.357 1.608 sum 3.771 -14.230 -10.876 18.303 Atomic orbital electron populations 1.23345 0.75413 1.03864 1.03119 1.86632 1.23935 1.31965 1.84380 1.19198 0.85551 0.82214 0.73773 1.91009 1.64161 1.35548 1.45533 1.20474 0.87813 0.85926 1.18435 1.84113 1.15816 1.34410 1.70588 1.24459 0.85297 0.95286 1.01771 1.21765 0.97294 0.95102 1.08757 1.20762 0.92642 0.95431 0.96459 1.20489 0.99483 0.88780 0.93063 1.60793 1.47407 1.05526 1.17082 1.22158 0.96222 0.86581 1.00229 1.18100 0.92545 0.94115 0.88449 1.21805 0.98055 0.95208 1.03694 1.21635 0.96575 0.96703 1.02688 1.21153 1.41232 0.97901 0.93923 0.92927 1.24887 0.95733 0.97283 0.95730 1.69852 1.47847 1.35988 0.98740 0.86604 0.78520 0.85305 0.77919 1.19955 1.21212 1.21153 0.91259 0.91633 0.87885 0.77045 0.82119 0.90125 0.93323 0.84049 0.92543 0.96552 0.97325 0.89920 0.96129 0.96302 0.90778 0.96205 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.42 16 2 O -0.35 -4.67 10.58 -42.49 -0.45 -5.11 16 3 C 0.55 8.40 7.93 34.05 0.27 8.67 16 4 O -0.47 -8.31 14.06 -19.36 -0.27 -8.58 16 5 C -0.08 -1.12 7.18 -36.84 -0.26 -1.38 16 6 O -0.15 -1.96 10.67 4.74 0.05 -1.91 16 7 C 0.00 0.02 12.08 29.64 0.36 0.38 16 8 C -0.21 -2.40 10.83 -39.90 -0.43 -2.83 16 9 C -0.05 -0.74 5.71 -104.42 -0.60 -1.33 16 10 C 0.11 1.82 5.34 -4.98 -0.03 1.80 16 11 N -0.68 -13.28 5.70 -115.06 -0.66 -13.93 16 12 C 0.08 1.70 4.59 -3.82 -0.02 1.68 16 13 C 0.07 1.73 0.57 -155.65 -0.09 1.65 16 14 C -0.13 -3.27 7.92 37.16 0.29 -2.98 16 15 C -0.12 -2.99 8.09 37.16 0.30 -2.69 16 16 C -0.50 -13.96 8.01 -34.44 -0.28 -14.24 16 17 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 18 C 0.06 1.78 5.15 -17.82 -0.09 1.69 16 19 N -0.89 -25.09 9.35 55.43 0.52 -24.57 16 20 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.21 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.05 0.84 7.02 -51.93 -0.36 0.48 16 31 H 0.34 7.05 6.01 -39.29 -0.24 6.81 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.01 0.19 6.57 -51.93 -0.34 -0.16 16 35 H 0.08 2.27 6.07 -51.93 -0.32 1.95 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 2.04 6.07 -51.93 -0.32 1.72 16 39 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 331.82 15.07 5.00 5.00 Total: -1.00 -31.31 331.82 -6.07 -37.37 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.74 Total: 3.38 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 0.50 Total: -8.16 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.14 Total: -38.51 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.67 Total: -15.60 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.31 -6.07 -37.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459684294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.530 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds