Wall clock time and date at job start Tue Mar 31 2020 06:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34774 * 117.00065 * 2 1 4 4 O 1.21532 * 119.99828 * 359.97438 * 3 2 1 5 5 C 1.47228 * 119.99757 * 179.97438 * 3 2 1 6 6 C 1.36496 * 127.20498 * 359.97438 * 5 3 2 7 7 O 1.33628 * 108.38430 * 180.02562 * 6 5 3 8 8 C 1.34212 * 110.92715 * 359.97438 * 7 6 5 9 9 C 1.50703 * 125.43027 * 179.97438 * 8 7 6 10 10 N 1.46896 * 109.47034 * 270.02258 * 9 8 7 11 11 C 1.46895 * 111.00099 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47336 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47148 * 299.99963 * 12 11 10 14 14 C 1.52995 * 109.47200 * 59.99873 * 12 11 10 15 15 C 1.50703 * 109.47505 * 179.97438 * 12 11 10 16 16 H 1.08005 * 119.99169 * 0.02562 * 15 12 11 17 17 C 1.37871 * 120.00386 * 179.97438 * 15 12 11 18 18 N 1.31519 * 119.99990 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 120.00020 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47324 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46865 * 120.00694 * 19 17 15 22 22 H 1.48496 * 109.47222 * 240.00071 * 19 17 15 23 23 C 1.34164 * 109.14282 * 359.97438 * 8 7 6 24 24 H 1.08994 * 109.46733 * 60.00193 * 1 2 3 25 25 H 1.09001 * 109.47002 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47247 * 300.00291 * 1 2 3 27 27 H 1.07995 * 125.80867 * 359.97438 * 6 5 3 28 28 H 1.08990 * 109.47103 * 30.02134 * 9 8 7 29 29 H 1.08997 * 109.47252 * 150.02295 * 9 8 7 30 30 H 1.00909 * 111.00223 * 303.95264 * 10 9 8 31 31 H 1.08992 * 109.47371 * 300.00077 * 11 10 9 32 32 H 1.09000 * 109.47377 * 59.99940 * 11 10 9 33 33 H 1.09005 * 109.47118 * 60.00290 * 13 12 11 34 34 H 1.08998 * 109.46993 * 179.97438 * 13 12 11 35 35 H 1.08993 * 109.47049 * 300.00017 * 13 12 11 36 36 H 1.09003 * 109.47205 * 60.00222 * 14 12 11 37 37 H 1.08998 * 109.47615 * 180.02562 * 14 12 11 38 38 H 1.08999 * 109.47490 * 300.00627 * 14 12 11 39 39 H 0.96992 * 119.99945 * 179.97438 * 18 17 15 40 40 H 1.07999 * 127.02221 * 179.73892 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5341 1.2778 0.0006 6 6 4.4152 0.2353 0.0016 7 8 5.6558 0.7319 0.0024 8 6 5.6349 2.0739 0.0013 9 6 6.8491 2.9665 0.0023 10 7 7.2421 3.2571 1.3876 11 6 8.4255 4.1264 1.4278 12 6 8.8032 4.4068 2.8837 13 6 7.6363 5.1011 3.5887 14 6 9.1152 3.0875 3.5928 15 6 10.0177 5.2981 2.9250 16 1 10.4742 5.6316 2.0047 17 6 10.5454 5.6886 4.1374 18 7 9.9891 5.2829 5.2579 19 14 12.0512 6.7928 4.1884 20 1 12.4828 7.1058 2.8024 21 1 11.7168 8.0533 4.8989 22 1 13.1507 6.0977 4.9046 23 6 4.3608 2.4941 -0.0008 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 4.1541 -0.8126 0.0026 28 1 7.6695 2.4644 -0.5103 29 1 6.6154 3.8985 -0.5122 30 1 6.4761 3.6646 1.9029 31 1 9.2567 3.6320 0.9252 32 1 8.2031 5.0666 0.9230 33 1 6.7581 4.4561 3.5589 34 1 7.9052 5.3005 4.6260 35 1 7.4140 6.0410 3.0835 36 1 9.9466 2.5928 3.0905 37 1 9.3839 3.2871 4.6301 38 1 8.2371 2.4424 3.5629 39 1 10.3606 5.5574 6.1109 40 1 4.0133 3.5166 0.0019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459728806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:07 Heat of formation + Delta-G solvation = -72.182127 kcal Electronic energy + Delta-G solvation = -21528.884954 eV Core-core repulsion = 18117.680509 eV Total energy + Delta-G solvation = -3411.204445 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.69824 -40.29485 -37.08341 -36.58926 -34.35691 -33.03595 -31.48832 -29.84024 -28.03747 -25.66403 -25.57106 -25.18428 -24.11909 -23.06600 -21.17953 -20.33060 -18.58077 -17.77978 -17.28690 -16.70478 -16.20634 -16.12478 -15.85575 -15.31020 -14.62200 -14.23044 -13.88552 -13.70005 -13.48934 -13.27040 -13.01442 -12.57837 -12.47020 -12.33536 -12.08386 -11.53064 -11.16345 -11.07379 -11.02730 -10.82366 -10.67634 -10.58280 -10.20503 -10.08441 -9.98950 -9.41352 -9.19391 -8.80662 -8.62255 -8.30821 -7.85730 -5.92593 -4.03266 1.00949 1.86258 2.38770 2.76012 2.91802 3.29879 3.38436 3.41536 4.38226 4.44343 4.45177 4.77551 4.81797 4.89704 4.94272 5.18234 5.29246 5.33125 5.36390 5.51648 5.66612 5.80251 6.09115 6.18104 6.24995 6.30537 6.67647 6.85714 6.91469 7.04304 7.14259 7.34910 7.41211 7.56305 7.61897 7.74248 7.80514 7.83265 8.18674 8.32251 8.53252 8.98251 9.62017 11.08050 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.038719 B = 0.002888 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.990344 B = 9693.284415 C = 9883.812182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.360 6.360 3 C 0.539 3.461 4 O -0.506 6.506 5 C -0.234 4.234 6 C 0.055 3.945 7 O -0.158 6.158 8 C 0.016 3.984 9 C 0.131 3.869 10 N -0.684 5.684 11 C 0.075 3.925 12 C 0.069 3.931 13 C -0.134 4.134 14 C -0.120 4.120 15 C -0.507 4.507 16 H 0.053 0.947 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.889 3.111 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.285 1.285 23 C -0.162 4.162 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.219 0.781 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.343 0.657 31 H 0.060 0.940 32 H 0.018 0.982 33 H 0.011 0.989 34 H 0.084 0.916 35 H 0.020 0.980 36 H 0.019 0.981 37 H 0.074 0.926 38 H 0.020 0.980 39 H 0.258 0.742 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.308 -10.773 -10.873 20.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.277 6.277 3 C 0.385 3.615 4 O -0.395 6.395 5 C -0.237 4.237 6 C -0.016 4.016 7 O -0.052 6.052 8 C -0.033 4.033 9 C 0.002 3.998 10 N -0.317 5.317 11 C -0.053 4.053 12 C 0.068 3.932 13 C -0.192 4.192 14 C -0.178 4.178 15 C -0.545 4.545 16 H 0.071 0.929 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.717 3.283 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.182 4.182 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.235 0.765 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.162 0.838 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.030 0.970 34 H 0.103 0.897 35 H 0.039 0.961 36 H 0.038 0.962 37 H 0.093 0.907 38 H 0.039 0.961 39 H 0.068 0.932 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.856 -11.177 -10.607 20.722 hybrid contribution -0.068 1.560 -0.170 1.570 sum -13.923 -9.617 -10.778 20.063 Atomic orbital electron populations 1.23271 0.75817 1.03724 1.02735 1.86532 1.23710 1.32705 1.84773 1.20067 0.87617 0.81372 0.72491 1.90851 1.66541 1.35991 1.46090 1.20441 0.90138 0.94845 1.18269 1.24658 0.80563 0.99300 0.97089 1.83825 1.29809 1.21960 1.69641 1.22431 0.96630 0.80198 1.04040 1.20438 0.91630 0.94381 0.93401 1.60649 1.09684 1.51881 1.09467 1.22219 0.90005 0.91981 1.01086 1.18101 0.93638 0.93564 0.87858 1.21853 0.95845 0.97020 1.04462 1.21653 0.97261 0.95994 1.02902 1.21127 1.11676 1.29463 0.92269 0.92861 1.24890 0.96894 0.96085 0.95750 1.69845 1.40197 1.45055 0.97189 0.86590 0.83203 0.80508 0.77964 1.19941 1.21178 1.21107 1.22426 0.90493 0.98583 1.06717 0.91831 0.87932 0.91737 0.76467 0.89207 0.92132 0.83761 0.92120 0.96383 0.97045 0.89729 0.96098 0.96204 0.90679 0.96123 0.93210 0.82234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.34 16 2 O -0.36 -3.71 10.42 -40.69 -0.42 -4.13 16 3 C 0.54 6.97 7.95 34.38 0.27 7.24 16 4 O -0.51 -7.89 16.77 -19.29 -0.32 -8.22 16 5 C -0.23 -2.94 6.31 -103.30 -0.65 -3.60 16 6 C 0.06 0.58 11.94 30.10 0.36 0.94 16 7 O -0.16 -2.03 10.52 7.72 0.08 -1.95 16 8 C 0.02 0.22 6.79 -35.74 -0.24 -0.03 16 9 C 0.13 1.80 6.20 -4.98 -0.03 1.77 16 10 N -0.68 -11.78 5.70 -115.07 -0.66 -12.44 16 11 C 0.07 1.49 4.59 -3.83 -0.02 1.47 16 12 C 0.07 1.64 0.57 -155.66 -0.09 1.55 16 13 C -0.13 -3.13 7.92 37.16 0.29 -2.84 16 14 C -0.12 -2.91 8.09 37.15 0.30 -2.61 16 15 C -0.51 -13.41 8.01 -34.44 -0.28 -13.69 16 16 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 17 C 0.06 1.74 5.15 -17.82 -0.09 1.65 16 18 N -0.88 -24.35 9.35 55.43 0.52 -23.83 16 19 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 C -0.16 -2.16 10.90 -37.44 -0.41 -2.56 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.22 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.34 5.95 6.76 -39.29 -0.27 5.68 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 34 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 2.00 6.07 -51.93 -0.32 1.68 16 38 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 39 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 40 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 337.12 15.07 5.08 5.08 Total: -1.00 -30.31 337.12 -6.08 -36.39 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.82 Total: 2.55 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 0.49 Total: -9.36 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.14 Total: -36.27 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.67 Total: -14.30 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.31 -6.08 -36.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459728806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.791 kcal (2) G-P(sol) polarization free energy of solvation -30.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds