Wall clock time and date at job start Tue Mar 31 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34893 * 117.00258 * 2 1 4 4 O 1.21621 * 119.99823 * 359.97438 * 3 2 1 5 5 C 1.46478 * 120.00194 * 179.97438 * 3 2 1 6 6 C 1.36639 * 125.99380 * 180.02562 * 5 3 2 7 7 C 1.40315 * 106.69806 * 179.97438 * 6 5 3 8 8 C 1.35169 * 107.12456 * 359.97438 * 7 6 5 9 9 C 1.50704 * 125.60385 * 180.02562 * 8 7 6 10 10 N 1.46898 * 109.47041 * 89.99727 * 9 8 7 11 11 C 1.46906 * 110.99888 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.47378 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.46733 * 299.99953 * 12 11 10 14 14 C 1.53005 * 109.47212 * 59.99438 * 12 11 10 15 15 C 1.50696 * 109.47429 * 179.97438 * 12 11 10 16 16 H 1.07999 * 119.99822 * 0.02562 * 15 12 11 17 17 C 1.37876 * 120.00339 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99769 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00300 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47112 * 90.00199 * 19 17 15 21 21 H 1.48499 * 109.47134 * 210.00310 * 19 17 15 22 22 H 1.48498 * 109.47011 * 329.99931 * 19 17 15 23 23 O 1.33904 * 108.78525 * 0.26014 * 8 7 6 24 24 H 1.08997 * 109.47274 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47059 * 299.99905 * 1 2 3 26 26 H 1.09000 * 109.46855 * 60.00205 * 1 2 3 27 27 H 1.08001 * 126.65077 * 359.97438 * 6 5 3 28 28 H 1.07993 * 126.43388 * 180.02562 * 7 6 5 29 29 H 1.08997 * 109.46924 * 329.99639 * 9 8 7 30 30 H 1.08995 * 109.46962 * 209.99793 * 9 8 7 31 31 H 1.00901 * 111.00121 * 56.04537 * 10 9 8 32 32 H 1.09004 * 109.47040 * 299.99934 * 11 10 9 33 33 H 1.09000 * 109.47033 * 59.99886 * 11 10 9 34 34 H 1.09002 * 109.47288 * 60.00045 * 13 12 11 35 35 H 1.09001 * 109.46630 * 179.97438 * 13 12 11 36 36 H 1.09000 * 109.47188 * 299.99959 * 13 12 11 37 37 H 1.08996 * 109.46524 * 60.00440 * 14 12 11 38 38 H 1.09001 * 109.46962 * 180.02562 * 14 12 11 39 39 H 1.08992 * 109.47457 * 300.00343 * 14 12 11 40 40 H 0.97000 * 120.00540 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4021 2.2219 -0.0005 5 6 3.5272 1.2785 0.0006 6 6 4.2713 2.4245 0.0011 7 6 5.6181 2.0308 0.0021 8 6 5.6376 0.6793 0.0027 9 6 6.8755 -0.1803 0.0044 10 7 7.2762 -0.4589 1.3899 11 6 8.4821 -1.2970 1.4308 12 6 8.8674 -1.5657 2.8868 13 6 9.1451 -0.2377 3.5942 14 6 7.7191 -2.2894 3.5931 15 6 10.1040 -2.4260 2.9287 16 1 10.5689 -2.7484 2.0088 17 6 10.6425 -2.8005 4.1414 18 7 10.0767 -2.4074 5.2616 19 14 12.1758 -3.8662 4.1933 20 1 13.3812 -2.9990 4.2073 21 1 12.1548 -4.7044 5.4190 22 1 12.2103 -4.7425 2.9950 23 8 4.3763 0.2298 -0.0036 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.8956 3.4371 0.0008 28 1 6.4775 2.6848 0.0032 29 1 7.6820 0.3433 -0.5088 30 1 6.6668 -1.1187 -0.5092 31 1 6.5216 -0.8863 1.9057 32 1 8.2841 -2.2433 0.9272 33 1 9.3000 -0.7816 0.9273 34 1 8.2503 0.3841 3.5639 35 1 9.4191 -0.4291 4.6317 36 1 9.9631 0.2779 3.0911 37 1 7.5213 -3.2354 3.0891 38 1 7.9935 -2.4804 4.6305 39 1 6.8244 -1.6676 3.5628 40 1 10.4553 -2.6712 6.1149 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459737743.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:10 Heat of formation + Delta-G solvation = -69.519135 kcal Electronic energy + Delta-G solvation = -21640.758330 eV Core-core repulsion = 18229.669361 eV Total energy + Delta-G solvation = -3411.088969 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.83608 -40.38258 -37.10696 -36.77175 -34.35511 -33.18380 -31.50774 -30.11513 -28.13617 -26.08326 -25.59734 -25.22778 -23.53226 -22.55334 -21.68559 -20.50369 -18.65539 -18.50238 -17.28455 -16.96511 -16.22511 -15.94099 -15.58636 -15.20453 -14.59491 -14.23837 -13.99726 -13.48328 -13.30464 -13.17456 -13.06361 -12.61723 -12.50027 -12.39079 -12.05940 -11.90590 -11.15255 -11.12084 -11.10769 -11.04510 -10.67357 -10.63504 -10.22176 -10.16572 -10.09307 -9.43264 -9.21009 -8.76946 -8.64605 -8.32256 -7.91252 -5.94070 -4.04972 0.67100 2.09365 2.15645 2.72738 2.83145 3.29820 3.37054 3.39407 4.36791 4.44354 4.72838 4.75807 4.81176 4.84281 4.89512 5.21510 5.31616 5.34663 5.41959 5.47896 5.72705 5.75756 5.96132 6.19769 6.22243 6.27098 6.65098 6.77515 6.83562 7.01697 7.12116 7.31627 7.37715 7.40971 7.58027 7.72050 7.76615 7.78907 8.16491 8.30229 8.51227 8.96292 9.60369 11.06524 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032405 B = 0.003052 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.844870 B = 9172.870087 C = 9505.426836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.348 6.348 3 C 0.556 3.444 4 O -0.493 6.493 5 C -0.082 4.082 6 C -0.096 4.096 7 C -0.209 4.209 8 C 0.054 3.946 9 C 0.129 3.871 10 N -0.681 5.681 11 C 0.074 3.926 12 C 0.070 3.930 13 C -0.120 4.120 14 C -0.134 4.134 15 C -0.508 4.508 16 H 0.053 0.947 17 C 0.066 3.934 18 N -0.884 5.884 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.276 1.276 23 O -0.151 6.151 24 H 0.105 0.895 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.163 0.837 28 H 0.163 0.837 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.344 0.656 32 H 0.019 0.981 33 H 0.061 0.939 34 H 0.020 0.980 35 H 0.075 0.925 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.084 0.916 39 H 0.010 0.990 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.861 6.088 -10.808 18.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.264 6.264 3 C 0.402 3.598 4 O -0.383 6.383 5 C -0.132 4.132 6 C -0.116 4.116 7 C -0.229 4.229 8 C 0.000 4.000 9 C 0.000 4.000 10 N -0.314 5.314 11 C -0.053 4.053 12 C 0.069 3.931 13 C -0.178 4.178 14 C -0.192 4.192 15 C -0.547 4.547 16 H 0.071 0.929 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.201 1.201 23 O -0.046 6.046 24 H 0.123 0.877 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.181 0.819 28 H 0.180 0.820 29 H 0.124 0.876 30 H 0.066 0.934 31 H 0.163 0.837 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.093 0.907 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.103 0.897 39 H 0.029 0.971 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.829 6.611 -10.543 18.604 hybrid contribution 0.319 -1.240 -0.186 1.294 sum -13.510 5.370 -10.729 18.068 Atomic orbital electron populations 1.23353 0.75450 1.04137 1.02774 1.86686 1.23908 1.31837 1.83994 1.19204 0.85587 0.82035 0.72986 1.90932 1.64490 1.35910 1.46977 1.20538 0.87707 0.86389 1.18583 1.21994 0.92560 0.98595 0.98443 1.21621 0.97440 0.94404 1.09405 1.23138 0.83400 0.94534 0.98917 1.20583 0.89004 0.96746 0.93712 1.60744 1.09055 1.52583 1.09040 1.22243 0.89488 0.92418 1.01190 1.18096 0.93678 0.93543 0.87782 1.21659 0.97234 0.95992 1.02942 1.21852 0.95772 0.97083 1.04465 1.21085 1.10264 1.31102 0.92264 0.92902 1.24885 0.96947 0.95984 0.95735 1.69831 1.39770 1.45439 0.97222 0.86645 0.83678 0.80520 0.77401 1.20771 1.21327 1.20088 1.84097 1.15617 1.34701 1.70168 0.87674 0.91522 0.91626 0.81935 0.81951 0.87606 0.93449 0.83690 0.96298 0.92017 0.96094 0.90666 0.96186 0.96091 0.89725 0.97068 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.35 -4.22 10.58 -42.46 -0.45 -4.66 16 3 C 0.56 7.44 7.93 34.05 0.27 7.71 16 4 O -0.49 -7.10 16.66 -19.36 -0.32 -7.42 16 5 C -0.08 -1.12 7.18 -36.84 -0.26 -1.39 16 6 C -0.10 -1.17 10.62 -39.38 -0.42 -1.58 16 7 C -0.21 -2.53 10.77 -39.89 -0.43 -2.96 16 8 C 0.05 0.72 6.82 -35.40 -0.24 0.48 16 9 C 0.13 1.72 6.21 -4.97 -0.03 1.69 16 10 N -0.68 -11.46 5.70 -115.06 -0.66 -12.12 16 11 C 0.07 1.45 4.59 -3.82 -0.02 1.43 16 12 C 0.07 1.63 0.57 -155.66 -0.09 1.54 16 13 C -0.12 -2.86 8.09 37.16 0.30 -2.56 16 14 C -0.13 -3.11 7.92 37.16 0.29 -2.81 16 15 C -0.51 -13.33 8.01 -34.44 -0.28 -13.61 16 16 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 17 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 18 N -0.88 -24.16 9.35 55.43 0.52 -23.64 16 19 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 23 O -0.15 -2.18 10.67 4.77 0.05 -2.13 16 24 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 28 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.34 5.99 6.76 -39.29 -0.27 5.72 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 35 H 0.07 1.98 6.07 -51.93 -0.32 1.66 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 39 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 40 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 336.77 15.07 5.08 5.08 Total: -1.00 -28.98 336.77 -6.55 -35.53 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.82 Total: 2.68 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.06 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.14 Total: -35.75 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.72 Total: -14.22 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.98 -6.55 -35.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459737743.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.989 kcal (2) G-P(sol) polarization free energy of solvation -28.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds