Wall clock time and date at job start Tue Mar 31 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00048 * 2 1 4 4 N 1.46508 * 109.46898 * 125.00147 * 3 2 1 5 5 C 1.46501 * 120.00117 * 270.00439 * 4 3 2 6 6 C 1.50696 * 109.47012 * 270.00057 * 5 4 3 7 7 H 1.08005 * 120.00002 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99996 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99753 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 119.99872 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47302 * 89.99974 * 10 8 6 12 12 H 1.48507 * 109.46970 * 209.99828 * 10 8 6 13 13 H 1.48500 * 109.47201 * 329.99354 * 10 8 6 14 14 C 1.38313 * 120.00039 * 90.00134 * 4 3 2 15 15 N 1.31634 * 127.50056 * 0.02562 * 14 4 3 16 16 C 1.31293 * 116.78989 * 179.97438 * 15 14 4 17 17 C 1.50701 * 121.06178 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47228 * 59.99759 * 17 16 15 19 19 C 1.52999 * 109.47352 * 179.97438 * 17 16 15 20 20 C 1.53004 * 109.47338 * 300.00122 * 17 16 15 21 21 N 1.30122 * 117.87496 * 359.97438 * 16 15 14 22 22 S 1.69944 * 105.76831 * 0.02562 * 21 16 15 23 23 H 1.08005 * 119.99706 * 179.97438 * 1 2 3 24 24 H 1.07995 * 120.00022 * 359.97438 * 1 2 3 25 25 H 1.08007 * 119.99733 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47168 * 5.00906 * 3 2 1 27 27 H 1.08991 * 109.47501 * 245.00294 * 3 2 1 28 28 H 1.09005 * 109.46952 * 29.99668 * 5 4 3 29 29 H 1.09002 * 109.47434 * 149.99906 * 5 4 3 30 30 H 0.97006 * 120.00234 * 180.02562 * 9 8 6 31 31 H 1.09001 * 109.47435 * 59.99772 * 18 17 16 32 32 H 1.08993 * 109.47718 * 180.02562 * 18 17 16 33 33 H 1.09006 * 109.47058 * 299.99914 * 18 17 16 34 34 H 1.09010 * 109.46652 * 60.00093 * 19 17 16 35 35 H 1.08994 * 109.47388 * 179.97438 * 19 17 16 36 36 H 1.08993 * 109.47035 * 300.00246 * 19 17 16 37 37 H 1.08999 * 109.47081 * 59.99208 * 20 17 16 38 38 H 1.08994 * 109.47528 * 180.02562 * 20 17 16 39 39 H 1.09001 * 109.46514 * 299.99997 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5589 1.8647 2.4250 6 6 2.8443 3.3433 2.4806 7 1 3.3033 3.8369 1.6367 8 6 2.5184 4.0664 3.6085 9 7 2.7679 5.3567 3.6572 10 14 1.7239 3.2129 5.0678 11 1 2.7799 2.7227 5.9897 12 1 0.8470 4.1728 5.7854 13 1 0.9131 2.0648 4.5886 14 6 4.2827 0.8538 0.9785 15 7 4.8257 0.3470 -0.1082 16 6 6.0756 -0.0446 -0.0178 17 6 6.7917 -0.6395 -1.2029 18 6 6.8206 0.3783 -2.3449 19 6 8.2245 -0.9995 -0.8050 20 6 6.0572 -1.9006 -1.6623 21 7 6.6763 0.0973 1.1277 22 16 5.5272 0.7932 2.1686 23 1 -0.5400 -0.9354 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3586 2.1316 0.0897 27 1 2.6212 1.4027 -0.9313 28 1 1.4887 1.6964 2.5460 29 1 3.0990 1.3600 3.2261 30 1 2.5390 5.8654 4.4509 31 1 7.3438 1.2769 -2.0178 32 1 7.3381 -0.0520 -3.2022 33 1 5.7999 0.6352 -2.6286 34 1 8.2043 -1.7245 0.0087 35 1 8.7423 -1.4301 -1.6620 36 1 8.7475 -0.1008 -0.4781 37 1 5.0366 -1.6437 -1.9458 38 1 6.5754 -2.3311 -2.5192 39 1 6.0367 -2.6257 -0.8487 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488514230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:12 Heat of formation + Delta-G solvation = 66.304208 kcal Electronic energy + Delta-G solvation = -20070.281019 eV Core-core repulsion = 17140.127414 eV Total energy + Delta-G solvation = -2930.153605 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.94215 -37.50432 -35.56470 -33.59268 -32.56974 -30.86938 -28.40877 -27.17359 -27.12070 -26.13152 -24.19186 -22.19777 -20.61929 -19.43612 -18.35463 -17.83624 -17.13851 -16.21463 -15.35743 -15.07112 -14.94778 -14.38062 -14.22587 -13.73519 -13.52141 -13.18100 -12.57705 -12.26919 -12.20261 -12.06648 -11.96878 -11.79975 -11.54559 -11.43160 -11.08776 -11.00144 -10.88389 -10.82639 -10.65863 -10.57292 -10.51043 -10.03010 -9.68369 -9.32762 -8.92921 -8.81626 -8.70414 -7.23933 -6.29809 -4.33836 1.43187 1.68649 2.38142 2.49258 3.13751 3.19508 3.22009 3.28644 3.45213 4.19362 4.47856 4.97336 4.99344 5.07401 5.10620 5.21643 5.32420 5.61327 5.66951 5.70571 5.77063 5.89729 5.94502 5.96883 5.99701 6.10857 6.18126 6.21596 6.31259 6.40007 6.43928 6.49781 6.54134 6.73156 6.81434 7.24622 7.31535 7.59091 8.21272 8.40310 8.73995 9.26719 10.82468 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.018400 B = 0.005763 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.370870 B = 4857.769099 C = 5733.110671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C 0.152 3.848 4 N -0.523 5.523 5 C 0.219 3.781 6 C -0.547 4.547 7 H 0.081 0.919 8 C 0.082 3.918 9 N -0.884 5.884 10 Si 0.867 3.133 11 H -0.269 1.269 12 H -0.280 1.280 13 H -0.264 1.264 14 C 0.360 3.640 15 N -0.600 5.600 16 C 0.310 3.690 17 C 0.023 3.977 18 C -0.133 4.133 19 C -0.131 4.131 20 C -0.132 4.132 21 N -0.525 5.525 22 S 0.175 5.825 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.031 0.969 30 H 0.269 0.731 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.728 -12.235 -8.694 15.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.179 4.179 3 C 0.028 3.972 4 N -0.235 5.235 5 C 0.098 3.902 6 C -0.586 4.586 7 H 0.099 0.901 8 C -0.122 4.122 9 N -0.521 5.521 10 Si 0.693 3.307 11 H -0.194 1.194 12 H -0.206 1.206 13 H -0.188 1.188 14 C -0.017 4.017 15 N -0.337 5.337 16 C 0.020 3.980 17 C 0.017 3.983 18 C -0.192 4.192 19 C -0.189 4.189 20 C -0.190 4.190 21 N -0.358 5.358 22 S 0.312 5.688 23 H 0.113 0.887 24 H 0.118 0.882 25 H 0.124 0.876 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.403 -11.972 -7.576 14.370 hybrid contribution -0.987 -0.259 0.140 1.030 sum 1.416 -12.231 -7.436 14.384 Atomic orbital electron populations 1.23830 0.95743 1.01815 1.01083 1.23379 0.96078 0.99167 0.99318 1.20665 0.91925 0.95228 0.89419 1.46399 1.04697 1.58812 1.13600 1.20055 0.96430 0.95677 0.77999 1.21260 1.43074 0.90474 1.03784 0.90097 1.24805 0.94748 0.94678 0.98006 1.69872 1.46285 1.06551 1.29378 0.86983 0.80265 0.80023 0.83424 1.19432 1.20556 1.18814 1.25129 0.92350 0.91198 0.93042 1.67222 1.11650 1.27849 1.27012 1.22792 0.86881 0.94567 0.93796 1.19116 0.94250 0.95316 0.89608 1.21802 1.02885 0.98065 0.96400 1.21740 0.93958 1.02252 1.00918 1.21791 1.00934 0.95570 1.00718 1.77372 1.23693 1.29534 1.05229 1.85166 1.00938 1.61118 1.21540 0.88680 0.88244 0.87609 0.88982 0.89281 0.93423 0.95116 0.92120 0.92714 0.92076 0.91444 0.92143 0.92462 0.92021 0.91467 0.92069 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 14.32 29.02 0.42 -1.92 16 2 C -0.16 -2.30 9.85 -36.03 -0.35 -2.66 16 3 C 0.15 2.54 6.01 -5.19 -0.03 2.50 16 4 N -0.52 -10.37 2.54 -177.92 -0.45 -10.82 16 5 C 0.22 4.80 4.27 -5.20 -0.02 4.78 16 6 C -0.55 -14.29 9.94 -34.44 -0.34 -14.64 16 7 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 8 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 9 N -0.88 -25.49 13.96 55.43 0.77 -24.71 16 10 Si 0.87 19.63 27.47 -169.99 -4.67 14.96 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 14 C 0.36 7.27 7.94 -86.36 -0.69 6.58 16 15 N -0.60 -11.28 9.76 -14.58 -0.14 -11.43 16 16 C 0.31 5.54 6.07 -159.04 -0.97 4.58 16 17 C 0.02 0.31 0.95 -155.66 -0.15 0.16 16 18 C -0.13 -1.67 8.39 37.16 0.31 -1.36 16 19 C -0.13 -1.63 7.73 37.16 0.29 -1.35 16 20 C -0.13 -1.57 8.39 37.16 0.31 -1.26 16 21 N -0.52 -10.16 11.01 29.54 0.33 -9.83 16 22 S 0.17 3.57 22.61 -107.50 -2.43 1.14 16 23 H 0.09 1.02 8.06 -52.48 -0.42 0.60 16 24 H 0.10 1.19 7.84 -52.49 -0.41 0.78 16 25 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 26 H 0.09 1.52 7.72 -51.93 -0.40 1.12 16 27 H 0.09 1.47 7.73 -51.93 -0.40 1.06 16 28 H 0.05 1.01 7.13 -51.93 -0.37 0.64 16 29 H 0.03 0.68 6.66 -51.93 -0.35 0.34 16 30 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 34 H 0.06 0.79 8.09 -51.92 -0.42 0.37 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 37 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -28.66 340.07 -8.95 -37.61 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.16 Total: 0.42 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -1.32 Total: -2.46 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.51 Total: -56.80 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.67 Total: 14.96 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -2.43 Total: 1.14 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.66 -8.95 -37.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488514230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.910 kcal (2) G-P(sol) polarization free energy of solvation -28.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds