Wall clock time and date at job start Tue Mar 31 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00145 * 2 1 4 4 N 1.46501 * 109.47413 * 125.00075 * 3 2 1 5 5 C 1.36762 * 127.13937 * 270.01527 * 4 3 2 6 6 C 1.50700 * 126.34319 * 359.97438 * 5 4 3 7 7 N 1.30305 * 107.31517 * 179.97438 * 5 4 3 8 8 N 1.28524 * 110.07735 * 0.02562 * 7 5 4 9 9 C 1.31279 * 109.86182 * 0.02562 * 8 7 5 10 10 S 1.76192 * 126.48644 * 180.02562 * 9 8 7 11 11 C 1.81001 * 100.00087 * 359.97375 * 10 9 8 12 12 C 1.52998 * 109.47073 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47310 * 299.99720 * 12 11 10 14 14 C 1.53003 * 109.47306 * 59.99793 * 12 11 10 15 15 C 1.50699 * 109.47034 * 179.97438 * 12 11 10 16 16 H 1.08007 * 119.99813 * 359.97438 * 15 12 11 17 17 C 1.37874 * 120.00350 * 179.97438 * 15 12 11 18 18 N 1.31519 * 119.99590 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00374 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.46928 * 59.99965 * 19 17 15 21 21 H 1.48495 * 109.46996 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47136 * 300.00069 * 19 17 15 23 23 H 1.07995 * 120.00118 * 180.02562 * 1 2 3 24 24 H 1.08005 * 119.99763 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.00435 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.47133 * 4.99846 * 3 2 1 27 27 H 1.09004 * 109.47516 * 244.99866 * 3 2 1 28 28 H 1.08994 * 109.46858 * 269.99756 * 6 5 4 29 29 H 1.09001 * 109.46950 * 29.99516 * 6 5 4 30 30 H 1.08998 * 109.46965 * 149.99634 * 6 5 4 31 31 H 1.09000 * 109.46608 * 299.99574 * 11 10 9 32 32 H 1.08995 * 109.46795 * 60.00035 * 11 10 9 33 33 H 1.09000 * 109.47227 * 59.99575 * 13 12 11 34 34 H 1.08995 * 109.47707 * 180.02562 * 13 12 11 35 35 H 1.09009 * 109.47153 * 300.00392 * 13 12 11 36 36 H 1.08997 * 109.47010 * 60.00153 * 14 12 11 37 37 H 1.09005 * 109.47026 * 179.97438 * 14 12 11 38 38 H 1.08995 * 109.47259 * 299.99877 * 14 12 11 39 39 H 0.97001 * 119.99425 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7447 1.7933 2.3945 6 6 1.4477 2.3774 2.8923 7 7 3.8365 1.6344 3.0878 8 7 4.7520 1.1085 2.3549 9 6 4.2898 0.9023 1.1435 10 16 5.1739 0.2013 -0.2098 11 6 6.7737 -0.0992 0.5817 12 6 7.7347 -0.7238 -0.4318 13 6 7.1569 -2.0489 -0.9331 14 6 7.9213 0.2305 -1.6130 15 6 9.0669 -0.9735 0.2270 16 1 9.2135 -0.7123 1.2647 17 6 10.0985 -1.5352 -0.4948 18 7 9.9201 -1.8528 -1.7586 19 14 11.7496 -1.8453 0.3220 20 1 11.5684 -2.7712 1.4687 21 1 12.6824 -2.4514 -0.6617 22 1 12.3107 -0.5592 0.8081 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9354 0.0004 25 1 1.8501 -0.9353 0.0004 26 1 1.3586 2.1317 0.0895 27 1 2.6214 1.4026 -0.9314 28 1 1.4496 3.4555 2.7320 29 1 0.6156 1.9306 2.3482 30 1 1.3400 2.1685 3.9566 31 1 7.1856 0.8448 0.9383 32 1 6.6406 -0.7788 1.4234 33 1 6.1934 -1.8680 -1.4096 34 1 7.8417 -2.4941 -1.6547 35 1 7.0239 -2.7288 -0.0915 36 1 8.3330 1.1745 -1.2559 37 1 8.6064 -0.2143 -2.3348 38 1 6.9580 0.4115 -2.0897 39 1 10.6458 -2.2484 -2.2663 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515435053.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:27 Heat of formation + Delta-G solvation = 84.674435 kcal Electronic energy + Delta-G solvation = -19729.252907 eV Core-core repulsion = 16799.895895 eV Total energy + Delta-G solvation = -2929.357012 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.67357 -36.40037 -35.98531 -32.94344 -32.25963 -31.53791 -28.04608 -26.83342 -26.06938 -25.70495 -25.11863 -22.59157 -21.06037 -20.32119 -19.01743 -17.52497 -16.35212 -16.22674 -15.97099 -15.03055 -14.72095 -14.40144 -14.03367 -13.77129 -13.41426 -13.07227 -13.03284 -12.63801 -12.51956 -12.20928 -11.85103 -11.44591 -11.42226 -11.27651 -10.84667 -10.77288 -10.51133 -10.33849 -10.17818 -10.14872 -9.93724 -9.86312 -9.64908 -9.45651 -9.43499 -8.69110 -8.37336 -7.13036 -6.00165 -4.10676 1.45423 1.72391 1.85563 2.77561 2.92704 3.01408 3.32580 3.36491 3.41084 4.29469 4.41176 4.42146 4.42679 4.78426 4.91115 5.09700 5.24754 5.26390 5.44246 5.48913 5.61718 5.85458 6.05035 6.11492 6.15880 6.17372 6.23061 6.54789 6.81094 6.84427 6.89401 7.01301 7.02729 7.34394 7.57020 7.71913 8.01392 8.13875 8.38553 8.86850 8.88506 9.54698 11.01092 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.029548 B = 0.004174 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.369515 B = 6706.554696 C = 7319.265975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.174 4.174 3 C 0.136 3.864 4 N -0.466 5.466 5 C 0.166 3.834 6 C -0.061 4.061 7 N -0.289 5.289 8 N -0.296 5.296 9 C 0.166 3.834 10 S -0.020 6.020 11 C -0.065 4.065 12 C 0.080 3.920 13 C -0.134 4.134 14 C -0.135 4.135 15 C -0.504 4.504 16 H 0.058 0.942 17 C 0.068 3.932 18 N -0.886 5.886 19 Si 0.895 3.105 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.121 0.879 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.015 0.985 34 H 0.087 0.913 35 H 0.029 0.971 36 H 0.029 0.971 37 H 0.087 0.913 38 H 0.015 0.985 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.997 5.676 0.722 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.193 4.193 3 C 0.013 3.987 4 N -0.161 5.161 5 C -0.103 4.103 6 C -0.120 4.120 7 N -0.129 5.129 8 N -0.139 5.139 9 C -0.208 4.208 10 S 0.210 5.790 11 C -0.214 4.214 12 C 0.077 3.923 13 C -0.192 4.192 14 C -0.193 4.193 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.134 4.134 18 N -0.524 5.524 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.125 0.875 24 H 0.118 0.882 25 H 0.139 0.861 26 H 0.117 0.883 27 H 0.126 0.874 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.034 0.966 34 H 0.106 0.894 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.106 0.894 38 H 0.034 0.966 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.294 5.435 0.638 19.095 hybrid contribution 0.385 0.019 0.626 0.735 sum -17.909 5.454 1.263 18.764 Atomic orbital electron populations 1.23924 0.95347 1.02513 0.98598 1.23171 0.96332 0.98426 1.01412 1.20974 0.91899 0.97298 0.88513 1.46450 1.10378 1.48113 1.11171 1.24962 0.99532 1.03698 0.82151 1.20141 0.88702 1.00481 1.02683 1.73920 0.97432 1.15835 1.25732 1.74739 1.22629 1.17498 0.99060 1.27530 0.86404 1.04781 1.02042 1.85627 1.12023 1.73645 1.07740 1.24134 0.90008 1.04710 1.02521 1.18074 0.91724 0.91909 0.90550 1.21909 0.97676 0.98770 1.00892 1.21911 0.98818 0.98301 1.00231 1.20966 0.94989 1.41127 0.97297 0.92363 1.24870 0.98556 0.95127 0.94841 1.69802 1.32367 1.42614 1.07614 0.86609 0.83416 0.78592 0.79121 1.20238 1.21301 1.20239 0.87538 0.88172 0.86091 0.88259 0.87397 0.89968 0.90730 0.88884 0.89964 0.89959 0.96591 0.89416 0.95226 0.95209 0.89412 0.96596 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 14.32 29.01 0.42 -0.70 16 2 C -0.17 -1.61 9.85 -36.03 -0.35 -1.96 16 3 C 0.14 1.34 6.19 -5.19 -0.03 1.31 16 4 N -0.47 -6.67 2.80 -114.81 -0.32 -6.99 16 5 C 0.17 2.40 8.07 -153.99 -1.24 1.16 16 6 C -0.06 -0.53 10.09 36.01 0.36 -0.16 16 7 N -0.29 -5.42 12.18 33.00 0.40 -5.02 16 8 N -0.30 -6.10 11.60 30.68 0.36 -5.75 16 9 C 0.17 3.00 8.07 -88.34 -0.71 2.29 16 10 S -0.02 -0.37 18.85 -107.50 -2.03 -2.39 16 11 C -0.07 -1.41 4.18 37.16 0.16 -1.26 16 12 C 0.08 1.90 0.52 -155.66 -0.08 1.82 16 13 C -0.13 -3.13 8.01 37.16 0.30 -2.84 16 14 C -0.13 -3.14 8.01 37.16 0.30 -2.84 16 15 C -0.50 -13.37 8.01 -34.44 -0.28 -13.64 16 16 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 17 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 18 N -0.89 -23.80 9.35 55.43 0.52 -23.28 16 19 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H 0.11 0.63 8.06 -52.49 -0.42 0.21 16 24 H 0.10 0.49 7.84 -52.48 -0.41 0.08 16 25 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 26 H 0.10 0.68 7.53 -51.93 -0.39 0.29 16 27 H 0.11 1.07 7.86 -51.93 -0.41 0.66 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.48 7.92 -51.93 -0.41 0.07 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.84 8.14 -51.92 -0.42 1.42 16 32 H 0.08 1.84 8.14 -51.92 -0.42 1.42 16 33 H 0.02 0.33 6.91 -51.93 -0.36 -0.03 16 34 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 35 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 38 H 0.02 0.33 6.91 -51.93 -0.36 -0.03 16 39 H 0.26 6.77 8.31 -40.82 -0.34 6.44 16 LS Contribution 334.24 15.07 5.04 5.04 Total: -1.00 -30.44 334.24 -8.21 -38.65 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.89 Total: -1.03 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -1.26 Total: -15.12 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.96 Total: -41.04 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -0.37 SS G_CDS: -2.03 Total: -2.39 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.44 -8.21 -38.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515435053.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.320 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds