Wall clock time and date at job start Tue Mar 31 2020 05:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76203 * 99.99758 * 2 1 4 4 C 1.39752 * 120.49161 * 180.02562 * 3 2 1 5 5 C 1.38046 * 118.48865 * 180.02562 * 4 3 2 6 6 N 1.32546 * 119.29819 * 359.97438 * 5 4 3 7 7 C 1.32477 * 120.94924 * 0.02562 * 6 5 4 8 8 N 1.38394 * 119.17745 * 179.97438 * 7 6 5 9 9 C 1.46500 * 120.00209 * 359.97438 * 8 7 6 10 10 C 1.52997 * 109.47473 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.47127 * 59.99627 * 10 9 8 12 12 C 1.52999 * 109.46991 * 300.00312 * 10 9 8 13 13 C 1.52997 * 109.47232 * 179.97438 * 10 9 8 14 14 C 1.50703 * 109.47084 * 179.97438 * 13 10 9 15 15 H 1.07996 * 119.99751 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99788 * 180.02562 * 14 13 10 17 17 N 1.31510 * 119.99893 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99600 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47141 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.46808 * 120.00099 * 18 16 14 21 21 H 1.48498 * 109.46651 * 239.99793 * 18 16 14 22 22 N 1.32454 * 121.64564 * 0.26642 * 7 6 5 23 23 H 1.08996 * 109.47034 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 299.99909 * 1 2 3 25 25 H 1.08997 * 109.47492 * 60.00088 * 1 2 3 26 26 H 1.08005 * 120.75458 * 359.97438 * 4 3 2 27 27 H 1.07995 * 120.35298 * 180.02562 * 5 4 3 28 28 H 0.97003 * 119.99808 * 179.97438 * 8 7 6 29 29 H 1.09002 * 109.47129 * 59.99823 * 9 8 7 30 30 H 1.09001 * 109.46596 * 300.00178 * 9 8 7 31 31 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 32 32 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 33 33 H 1.09000 * 109.47050 * 180.02562 * 11 10 9 34 34 H 1.09000 * 109.47160 * 179.97438 * 12 10 9 35 35 H 1.09002 * 109.46719 * 299.99711 * 12 10 9 36 36 H 1.08993 * 109.47839 * 59.99553 * 12 10 9 37 37 H 1.09001 * 109.47375 * 299.99867 * 13 10 9 38 38 H 1.09002 * 109.46777 * 60.00422 * 13 10 9 39 39 H 0.97005 * 119.99227 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.4250 2.2246 -0.0005 5 6 3.6170 3.5916 0.0000 6 7 2.5625 4.3947 0.0005 7 6 1.3321 3.9036 0.0010 8 7 0.2576 4.7758 0.0021 9 6 0.4884 6.2225 0.0032 10 6 -0.8557 6.9534 0.0049 11 6 -1.6475 6.5622 1.2544 12 6 -1.6493 6.5645 -1.2441 13 6 -0.6147 8.4642 0.0067 14 6 -1.9386 9.1842 0.0078 15 1 -2.8598 8.6204 0.0076 16 6 -1.9738 10.5625 0.0089 17 7 -0.8520 11.2489 0.0087 18 14 -3.6150 11.4548 0.0109 19 1 -4.7186 10.4613 0.0103 20 1 -3.7144 12.3052 1.2241 21 1 -3.7162 12.3073 -1.2008 22 7 1.1047 2.5988 0.0063 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 4.2673 1.5485 -0.0005 27 1 4.6158 4.0024 -0.0008 28 1 -0.6484 4.4291 0.0021 29 1 1.0528 6.5011 -0.8867 30 1 1.0533 6.4995 0.8933 31 1 -1.8192 5.4858 1.2534 32 1 -1.0821 6.8391 2.1442 33 1 -2.6052 7.0826 1.2553 34 1 -2.6070 7.0848 -1.2427 35 1 -1.0853 6.8431 -2.1342 36 1 -1.8210 5.4881 -1.2450 37 1 -0.0496 8.7410 0.8968 38 1 -0.0506 8.7432 -0.8832 39 1 -0.8769 12.2186 0.0099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519599397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:38 Heat of formation + Delta-G solvation = 36.118869 kcal Electronic energy + Delta-G solvation = -19518.876651 eV Core-core repulsion = 16587.414112 eV Total energy + Delta-G solvation = -2931.462539 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.73312 -37.77593 -34.55500 -33.64838 -32.35490 -30.38434 -29.14161 -27.07944 -26.51838 -26.17351 -24.61380 -23.43959 -22.26188 -18.70650 -18.30425 -17.30255 -16.31196 -16.19317 -15.61433 -15.34522 -14.59959 -14.41318 -14.15812 -14.07270 -13.93870 -13.62065 -13.06624 -12.77775 -12.58261 -12.45214 -12.08153 -11.36301 -11.10453 -11.07899 -11.02680 -10.90443 -10.82733 -10.68064 -10.42556 -10.42006 -10.24811 -9.83797 -9.25440 -9.07918 -8.93355 -8.37593 -8.25127 -7.76118 -6.01599 -4.02625 1.00631 1.25121 1.26077 1.89189 3.14839 3.29219 3.37459 3.40088 3.89817 4.31824 4.44355 4.79704 4.92433 5.00874 5.05640 5.22858 5.34230 5.45830 5.56871 5.61345 5.61692 5.75603 6.09262 6.17570 6.22431 6.30127 6.38981 6.62288 6.63094 6.78360 7.03623 7.05846 7.08753 7.26757 7.56642 7.62634 7.74457 7.97341 8.38879 8.41717 9.02263 9.60639 11.09911 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.036055 B = 0.003264 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.414807 B = 8577.433858 C = 9152.190979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.062 6.062 3 C 0.204 3.796 4 C -0.283 4.283 5 C 0.206 3.794 6 N -0.569 5.569 7 C 0.581 3.419 8 N -0.684 5.684 9 C 0.145 3.855 10 C -0.073 4.073 11 C -0.127 4.127 12 C -0.127 4.127 13 C 0.038 3.962 14 C -0.511 4.511 15 H 0.060 0.940 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 N -0.583 5.583 23 H 0.100 0.900 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.142 0.858 27 H 0.169 0.831 28 H 0.411 0.589 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.028 0.972 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.729 -20.712 -0.031 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.175 5.825 3 C -0.055 4.055 4 C -0.316 4.316 5 C 0.038 3.962 6 N -0.294 5.294 7 C 0.220 3.780 8 N -0.319 5.319 9 C 0.021 3.979 10 C -0.074 4.074 11 C -0.184 4.184 12 C -0.184 4.184 13 C 0.000 4.000 14 C -0.549 4.549 15 H 0.078 0.922 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 N -0.311 5.311 23 H 0.118 0.882 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.160 0.840 27 H 0.186 0.814 28 H 0.250 0.750 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.686 -20.666 -0.024 21.434 hybrid contribution -1.295 0.998 -0.001 1.635 sum 4.391 -19.668 -0.025 20.152 Atomic orbital electron populations 1.23432 0.93619 1.05922 1.07288 1.85685 1.08350 0.97747 1.90717 1.23093 0.91609 0.98202 0.92643 1.21985 0.96735 0.97832 1.15047 1.22824 0.97486 0.89079 0.86861 1.68078 0.98177 1.40044 1.23063 1.19368 0.86879 0.84713 0.86994 1.44612 1.05097 1.05545 1.76641 1.21646 0.98500 0.75822 1.01887 1.20940 0.92015 0.99296 0.95118 1.21762 1.01430 0.97995 0.97248 1.21758 1.01423 0.98000 0.97251 1.19080 0.97353 0.86052 0.97503 1.21222 0.92546 0.90977 1.50158 0.92209 1.25009 0.96089 0.97845 0.95540 1.69974 1.25838 1.06604 1.50960 0.86595 0.84354 0.79861 0.77541 1.19800 1.21116 1.21121 1.68153 1.34379 1.02497 1.26042 0.88178 0.89142 0.89164 0.83969 0.81408 0.75032 0.91720 0.91732 0.95285 0.93365 0.91396 0.91397 0.93363 0.95283 0.96298 0.96298 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 9.68 101.05 0.98 -0.16 16 2 S -0.06 -0.61 22.74 -107.50 -2.44 -3.06 16 3 C 0.20 2.61 7.01 -16.49 -0.12 2.49 16 4 C -0.28 -3.21 9.94 -39.09 -0.39 -3.59 16 5 C 0.21 2.49 11.28 -17.31 -0.20 2.29 16 6 N -0.57 -8.88 9.58 -14.03 -0.13 -9.01 16 7 C 0.58 9.26 8.43 -322.90 -2.72 6.54 16 8 N -0.68 -10.77 5.11 -62.33 -0.32 -11.09 16 9 C 0.14 2.54 4.54 -4.04 -0.02 2.52 16 10 C -0.07 -1.40 0.54 -154.51 -0.08 -1.48 16 11 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 12 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 13 C 0.04 0.92 4.04 -27.88 -0.11 0.80 16 14 C -0.51 -13.53 7.65 -34.44 -0.26 -13.79 16 15 H 0.06 1.53 5.68 -52.49 -0.30 1.24 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 18 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 N -0.58 -8.51 9.32 -12.71 -0.12 -8.63 16 23 H 0.10 0.61 8.14 -51.92 -0.42 0.18 16 24 H 0.09 0.84 8.13 -51.91 -0.42 0.41 16 25 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 26 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 27 H 0.17 1.41 8.06 -52.49 -0.42 0.98 16 28 H 0.41 6.07 6.28 -40.82 -0.26 5.82 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.31 6.62 -51.93 -0.34 0.96 16 34 H 0.07 1.31 6.62 -51.93 -0.34 0.96 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 332.15 15.07 5.01 5.01 Total: -1.00 -29.89 332.15 -10.45 -40.34 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.74 Total: 2.70 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -2.42 Total: -6.88 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.17 Total: -54.25 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -0.61 SS G_CDS: -2.44 Total: -3.06 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.89 -10.45 -40.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519599397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.457 kcal (2) G-P(sol) polarization free energy of solvation -29.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds