Wall clock time and date at job start Tue Mar 31 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76203 * 99.99758 * 2 1 4 4 C 1.39752 * 120.49161 * 180.02562 * 3 2 1 5 5 C 1.38046 * 118.48865 * 180.02562 * 4 3 2 6 6 N 1.32546 * 119.29819 * 359.97438 * 5 4 3 7 7 C 1.32477 * 120.94924 * 0.02562 * 6 5 4 8 8 N 1.38394 * 119.17745 * 179.97438 * 7 6 5 9 9 C 1.46500 * 120.00209 * 359.97438 * 8 7 6 10 10 C 1.52997 * 109.47473 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.47127 * 59.99627 * 10 9 8 12 12 C 1.52999 * 109.46991 * 300.00312 * 10 9 8 13 13 C 1.52997 * 109.47232 * 179.97438 * 10 9 8 14 14 C 1.50703 * 109.47084 * 179.97438 * 13 10 9 15 15 H 1.07996 * 119.99751 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99788 * 180.02562 * 14 13 10 17 17 N 1.31510 * 119.99893 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99600 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47141 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.46808 * 120.00099 * 18 16 14 21 21 H 1.48498 * 109.46651 * 239.99793 * 18 16 14 22 22 N 1.32454 * 121.64564 * 0.26642 * 7 6 5 23 23 H 1.08996 * 109.47034 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 299.99909 * 1 2 3 25 25 H 1.08997 * 109.47492 * 60.00088 * 1 2 3 26 26 H 1.08005 * 120.75458 * 359.97438 * 4 3 2 27 27 H 1.07995 * 120.35298 * 180.02562 * 5 4 3 28 28 H 0.97003 * 119.99808 * 179.97438 * 8 7 6 29 29 H 1.09002 * 109.47129 * 59.99823 * 9 8 7 30 30 H 1.09001 * 109.46596 * 300.00178 * 9 8 7 31 31 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 32 32 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 33 33 H 1.09000 * 109.47050 * 180.02562 * 11 10 9 34 34 H 1.09000 * 109.47160 * 179.97438 * 12 10 9 35 35 H 1.09002 * 109.46719 * 299.99711 * 12 10 9 36 36 H 1.08993 * 109.47839 * 59.99553 * 12 10 9 37 37 H 1.09001 * 109.47375 * 299.99867 * 13 10 9 38 38 H 1.09002 * 109.46777 * 60.00422 * 13 10 9 39 39 H 0.97005 * 119.99227 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.4250 2.2246 -0.0005 5 6 3.6170 3.5916 0.0000 6 7 2.5625 4.3947 0.0005 7 6 1.3321 3.9036 0.0010 8 7 0.2576 4.7758 0.0021 9 6 0.4884 6.2225 0.0032 10 6 -0.8557 6.9534 0.0049 11 6 -1.6475 6.5622 1.2544 12 6 -1.6493 6.5645 -1.2441 13 6 -0.6147 8.4642 0.0067 14 6 -1.9386 9.1842 0.0078 15 1 -2.8598 8.6204 0.0076 16 6 -1.9738 10.5625 0.0089 17 7 -0.8520 11.2489 0.0087 18 14 -3.6150 11.4548 0.0109 19 1 -4.7186 10.4613 0.0103 20 1 -3.7144 12.3052 1.2241 21 1 -3.7162 12.3073 -1.2008 22 7 1.1047 2.5988 0.0063 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 4.2673 1.5485 -0.0005 27 1 4.6158 4.0024 -0.0008 28 1 -0.6484 4.4291 0.0021 29 1 1.0528 6.5011 -0.8867 30 1 1.0533 6.4995 0.8933 31 1 -1.8192 5.4858 1.2534 32 1 -1.0821 6.8391 2.1442 33 1 -2.6052 7.0826 1.2553 34 1 -2.6070 7.0848 -1.2427 35 1 -1.0853 6.8431 -2.1342 36 1 -1.8210 5.4881 -1.2450 37 1 -0.0496 8.7410 0.8968 38 1 -0.0506 8.7432 -0.8832 39 1 -0.8769 12.2186 0.0099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519599397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:37 Heat of formation + Delta-G solvation = 20.669878 kcal Electronic energy + Delta-G solvation = -19519.546570 eV Core-core repulsion = 16587.414112 eV Total energy + Delta-G solvation = -2932.132458 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.77140 -39.27083 -35.96567 -34.66722 -34.28503 -31.54925 -29.83598 -28.99734 -28.00647 -27.54859 -25.69583 -24.99169 -23.68706 -20.04487 -19.45696 -18.55273 -18.31047 -17.23719 -16.50501 -16.48555 -16.45618 -15.71128 -15.44027 -15.24820 -14.76404 -14.62094 -14.48145 -14.37973 -13.97271 -13.96212 -13.28511 -12.96236 -12.71071 -12.70700 -12.37336 -12.24434 -12.13929 -12.04072 -11.94143 -11.73425 -11.72648 -11.36445 -11.03266 -10.85943 -10.51784 -10.12581 -9.28614 -8.68457 -8.14282 -6.21521 0.02122 0.26429 0.40794 1.13544 1.41083 1.42480 1.53906 1.99284 2.44317 2.85722 3.20367 3.36399 3.79115 3.96977 4.07917 4.09903 4.21257 4.32033 4.35231 4.40121 4.60329 4.69036 4.72638 4.78308 4.93589 4.95898 5.08182 5.08628 5.25772 5.41272 5.47118 5.49384 5.55181 5.69713 5.78705 5.89729 6.15479 6.30689 6.43384 6.93271 7.33482 7.46030 8.98343 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.036055 B = 0.003264 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.414807 B = 8577.433858 C = 9152.190979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.036 6.036 3 C 0.179 3.821 4 C -0.272 4.272 5 C 0.197 3.803 6 N -0.601 5.601 7 C 0.563 3.437 8 N -0.684 5.684 9 C 0.167 3.833 10 C -0.066 4.066 11 C -0.120 4.120 12 C -0.120 4.120 13 C 0.044 3.956 14 C -0.514 4.514 15 H 0.070 0.930 16 C -0.003 4.003 17 N -0.936 5.936 18 Si 0.956 3.044 19 H -0.259 1.259 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.589 5.589 23 H 0.127 0.873 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.174 0.826 27 H 0.202 0.798 28 H 0.415 0.585 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.038 0.962 36 H 0.060 0.940 37 H -0.011 1.011 38 H -0.011 1.011 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.153 -23.192 -0.034 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.201 5.799 3 C -0.080 4.080 4 C -0.304 4.304 5 C 0.030 3.970 6 N -0.327 5.327 7 C 0.202 3.798 8 N -0.321 5.321 9 C 0.042 3.958 10 C -0.066 4.066 11 C -0.177 4.177 12 C -0.177 4.177 13 C 0.006 3.994 14 C -0.552 4.552 15 H 0.088 0.912 16 C -0.200 4.200 17 N -0.578 5.578 18 Si 0.782 3.218 19 H -0.183 1.183 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.318 5.318 23 H 0.146 0.854 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.191 0.809 27 H 0.218 0.782 28 H 0.255 0.745 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.008 0.992 38 H 0.008 0.992 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.130 -23.208 -0.026 23.769 hybrid contribution -0.998 1.603 0.000 1.889 sum 4.132 -21.605 -0.027 21.996 Atomic orbital electron populations 1.23509 0.92670 1.07511 1.06568 1.85592 1.09378 0.94956 1.89931 1.23734 0.92119 0.99618 0.92506 1.22381 0.97229 0.98038 1.12781 1.23445 0.98000 0.89524 0.85993 1.68081 0.98893 1.41545 1.24193 1.19481 0.86980 0.85317 0.87990 1.44274 1.05514 1.04420 1.77937 1.21144 0.96917 0.77219 1.00490 1.20736 0.93402 0.95835 0.96654 1.21669 1.00174 0.99850 0.96005 1.21665 1.00166 0.99858 0.96007 1.18928 0.95888 0.89946 0.94608 1.21616 0.93563 0.91324 1.48740 0.91219 1.25905 0.99599 0.99022 0.95473 1.70117 1.28232 1.06834 1.52569 0.85521 0.80279 0.78658 0.77340 1.18304 1.20969 1.20979 1.68167 1.35177 1.02007 1.26432 0.85434 0.89837 0.89846 0.80903 0.78178 0.74531 0.93191 0.93212 0.92146 0.94248 0.92574 0.92577 0.94242 0.92141 0.99244 0.99246 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.68 113.37 1.10 -0.87 16 2 S -0.04 -0.61 22.74 -56.49 -1.28 -1.90 16 3 C 0.18 4.22 7.01 84.89 0.59 4.82 16 4 C -0.27 -5.52 9.94 22.59 0.22 -5.30 16 5 C 0.20 4.44 11.28 84.54 0.95 5.40 16 6 N -0.60 -18.54 9.58 -198.30 -1.90 -20.44 16 7 C 0.56 17.64 8.43 261.52 2.20 19.84 16 8 N -0.68 -21.27 5.11 -351.10 -1.79 -23.06 16 9 C 0.17 5.99 4.54 86.38 0.39 6.38 16 10 C -0.07 -2.54 0.54 -52.18 -0.03 -2.57 16 11 C -0.12 -4.23 8.05 71.98 0.58 -3.65 16 12 C -0.12 -4.23 8.05 71.98 0.58 -3.65 16 13 C 0.04 2.23 4.04 29.85 0.12 2.35 16 14 C -0.51 -27.68 7.65 25.60 0.20 -27.48 16 15 H 0.07 3.55 5.68 -2.91 -0.02 3.54 16 16 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 17 N -0.94 -56.61 13.29 21.45 0.28 -56.33 16 18 Si 0.96 43.73 29.54 68.60 2.03 45.75 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 N -0.59 -16.50 9.32 -194.13 -1.81 -18.31 16 23 H 0.13 1.15 8.14 -2.40 -0.02 1.13 16 24 H 0.08 1.38 8.13 -2.39 -0.02 1.36 16 25 H 0.08 1.38 8.14 -2.40 -0.02 1.36 16 26 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 27 H 0.20 2.91 8.06 -2.91 -0.02 2.88 16 28 H 0.42 11.72 6.28 -92.71 -0.58 11.14 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 1.75 6.86 -2.39 -0.02 1.73 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 2.11 6.62 -2.39 -0.02 2.09 16 34 H 0.06 2.11 6.62 -2.39 -0.02 2.09 16 35 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 1.75 6.86 -2.39 -0.02 1.73 16 37 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 Total: -1.00 -65.95 332.15 3.36 -62.59 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.47 Total: 16.15 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 7.37 Total: -4.44 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -5.22 Total: -118.14 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -0.61 SS G_CDS: -1.28 Total: -1.90 kcal Total: -65.95 3.36 -62.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519599397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.255 kcal (2) G-P(sol) polarization free energy of solvation -65.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds