Wall clock time and date at job start Tue Mar 31 2020 06:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34893 * 117.00196 * 2 1 4 4 O 1.21625 * 120.00194 * 359.97438 * 3 2 1 5 5 C 1.46469 * 119.99956 * 179.97438 * 3 2 1 6 6 C 1.36642 * 125.99432 * 179.97438 * 5 3 2 7 7 C 1.40308 * 106.70008 * 180.02562 * 6 5 3 8 8 C 1.35171 * 107.13005 * 359.97438 * 7 6 5 9 9 C 1.50699 * 125.61037 * 179.97438 * 8 7 6 10 10 N 1.46899 * 109.46804 * 82.70056 * 9 8 7 11 11 C 1.46904 * 110.99798 * 195.46889 * 10 9 8 12 12 C 1.50701 * 109.47075 * 169.99895 * 11 10 9 13 13 H 1.07993 * 120.00013 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99909 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00169 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99928 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47131 * 89.99987 * 16 14 12 18 18 H 1.48506 * 109.47024 * 210.00006 * 16 14 12 19 19 H 1.48501 * 109.47064 * 329.99864 * 16 14 12 20 20 C 1.46901 * 111.00402 * 71.51204 * 10 9 8 21 21 C 1.52995 * 109.46937 * 276.07858 * 20 10 9 22 22 C 1.53003 * 109.46953 * 36.07768 * 20 10 9 23 23 O 1.33911 * 108.77948 * 0.26755 * 8 7 6 24 24 H 1.08998 * 109.46969 * 300.00295 * 1 2 3 25 25 H 1.09000 * 109.46936 * 60.00350 * 1 2 3 26 26 H 1.09002 * 109.47393 * 180.02562 * 1 2 3 27 27 H 1.07991 * 126.64873 * 0.02562 * 6 5 3 28 28 H 1.08006 * 126.43764 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.47376 * 322.69805 * 9 8 7 30 30 H 1.09004 * 109.47270 * 202.69615 * 9 8 7 31 31 H 1.09009 * 109.46895 * 289.99385 * 11 10 9 32 32 H 1.09000 * 109.47453 * 49.99251 * 11 10 9 33 33 H 0.96998 * 119.99881 * 180.02562 * 15 14 12 34 34 H 1.09004 * 109.47159 * 156.07832 * 20 10 9 35 35 H 1.09006 * 109.47321 * 53.24701 * 21 20 10 36 36 H 1.08996 * 109.47467 * 173.24744 * 21 20 10 37 37 H 1.09004 * 109.47328 * 293.25301 * 21 20 10 38 38 H 1.09006 * 109.46962 * 60.00261 * 22 20 10 39 39 H 1.08998 * 109.46678 * 179.97438 * 22 20 10 40 40 H 1.08994 * 109.47183 * 300.00109 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4021 2.2220 -0.0005 5 6 3.5271 1.2785 0.0006 6 6 4.2713 2.4245 0.0001 7 6 5.6180 2.0308 0.0004 8 6 5.6376 0.6792 0.0015 9 6 6.8754 -0.1803 0.0016 10 7 7.3787 -0.3139 1.3752 11 6 8.7574 -0.8210 1.3837 12 6 9.3234 -0.7138 2.7763 13 1 8.7195 -0.3091 3.5749 14 6 10.6122 -1.1324 3.0307 15 7 11.1064 -1.0385 4.2459 16 14 11.6570 -1.8318 1.6491 17 1 12.4086 -0.7325 0.9918 18 1 12.6137 -2.8224 2.2047 19 1 10.7793 -2.4963 0.6525 20 6 6.4971 -1.1722 2.1778 21 6 5.3368 -0.3397 2.7268 22 6 5.9465 -2.2990 1.3014 23 8 4.3762 0.2297 -0.0040 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.8956 3.4370 -0.0003 28 1 6.4775 2.6848 0.0005 29 1 7.6399 0.2833 -0.6220 30 1 6.6329 -1.1667 -0.3940 31 1 8.7627 -1.8645 1.0687 32 1 9.3657 -0.2313 0.6979 33 1 12.0132 -1.3327 4.4247 34 1 7.0619 -1.5993 3.0065 35 1 4.8450 0.1835 1.9067 36 1 4.6203 -0.9962 3.2205 37 1 5.7183 0.3868 3.4443 38 1 6.7733 -2.8921 0.9103 39 1 5.2928 -2.9361 1.8971 40 1 5.3818 -1.8720 0.4728 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535796137.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:43 Heat of formation + Delta-G solvation = -49.939436 kcal Electronic energy + Delta-G solvation = -22639.220446 eV Core-core repulsion = 19228.980516 eV Total energy + Delta-G solvation = -3410.239930 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.82528 -40.30811 -37.98054 -36.68680 -33.16281 -32.83359 -31.63447 -30.71979 -28.63633 -27.30314 -26.73257 -25.17216 -22.77515 -21.86197 -21.51209 -20.45710 -19.10830 -18.45749 -17.20735 -16.89624 -16.79030 -16.07783 -15.49091 -15.32741 -14.59781 -14.24167 -13.99229 -13.45193 -13.28958 -13.11784 -12.98038 -12.91251 -12.61801 -12.44969 -12.36622 -12.07999 -11.94037 -11.14186 -11.13082 -11.05692 -11.01037 -10.76548 -10.59649 -10.47081 -10.05472 -10.02369 -9.91809 -9.35662 -8.63419 -8.49826 -7.52931 -6.10292 -4.08396 0.80499 2.20240 2.32030 2.85124 2.95525 3.23999 3.31916 3.32457 4.36317 4.53145 4.71688 4.84489 4.88776 4.91175 4.93731 5.21412 5.25929 5.42250 5.49745 5.57068 5.62724 5.71317 5.83666 5.90235 5.91830 6.05299 6.08618 6.21495 6.29536 6.37889 6.42114 6.61889 6.73262 6.89375 6.94103 6.94742 7.49026 7.51526 7.77904 7.90469 8.57148 8.98965 9.50261 11.02605 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032933 B = 0.004002 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.010204 B = 6994.195555 C = 7210.051633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.348 6.348 3 C 0.557 3.443 4 O -0.496 6.496 5 C -0.090 4.090 6 C -0.093 4.093 7 C -0.215 4.215 8 C 0.075 3.925 9 C 0.107 3.893 10 N -0.514 5.514 11 C 0.163 3.837 12 C -0.510 4.510 13 H 0.082 0.918 14 C 0.070 3.930 15 N -0.898 5.898 16 Si 0.873 3.127 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.076 3.924 21 C -0.145 4.145 22 C -0.183 4.183 23 O -0.150 6.150 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.104 0.896 27 H 0.161 0.839 28 H 0.162 0.838 29 H 0.104 0.896 30 H 0.062 0.938 31 H -0.006 1.006 32 H 0.027 0.973 33 H 0.264 0.736 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.278 1.448 -10.409 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.265 6.265 3 C 0.402 3.598 4 O -0.386 6.386 5 C -0.140 4.140 6 C -0.113 4.113 7 C -0.234 4.234 8 C 0.022 3.978 9 C -0.021 4.021 10 N -0.238 5.238 11 C 0.037 3.963 12 C -0.549 4.549 13 H 0.100 0.900 14 C -0.132 4.132 15 N -0.536 5.536 16 Si 0.701 3.299 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.192 1.192 20 C -0.032 4.032 21 C -0.203 4.203 22 C -0.241 4.241 23 O -0.045 6.045 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.122 0.878 27 H 0.178 0.822 28 H 0.179 0.821 29 H 0.122 0.878 30 H 0.080 0.920 31 H 0.011 0.989 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.433 1.842 -10.080 19.366 hybrid contribution 0.517 -0.919 -0.929 1.406 sum -15.916 0.923 -11.009 19.375 Atomic orbital electron populations 1.23330 0.75669 1.03999 1.02711 1.86687 1.23724 1.31952 1.84091 1.19229 0.85667 0.81945 0.72911 1.90925 1.64571 1.35915 1.47188 1.20452 0.87608 0.86548 1.19391 1.21965 0.92603 0.98470 0.98226 1.21592 0.97329 0.94502 1.10017 1.23025 0.83291 0.94443 0.97072 1.20915 0.89365 0.97427 0.94379 1.62163 1.03757 1.51012 1.06896 1.20237 0.83848 0.93099 0.99109 1.20973 0.98779 1.41670 0.93429 0.89973 1.24883 0.97547 0.95416 0.95335 1.69887 1.16257 1.47724 1.19763 0.86895 0.80740 0.79445 0.82855 1.20105 1.21197 1.19233 1.21712 0.93532 0.91006 0.96959 1.21985 0.97287 1.00028 1.00960 1.22491 1.01014 0.99668 1.00950 1.84158 1.15593 1.34554 1.70235 0.91601 0.91700 0.87791 0.82163 0.82056 0.87816 0.92030 0.98852 0.95520 0.92583 0.88109 0.92765 0.93474 0.92352 0.92782 0.92577 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.37 16 2 O -0.35 -4.37 10.58 -42.46 -0.45 -4.82 16 3 C 0.56 7.79 7.93 34.05 0.27 8.06 16 4 O -0.50 -7.48 16.66 -19.36 -0.32 -7.80 16 5 C -0.09 -1.30 6.80 -36.85 -0.25 -1.55 16 6 C -0.09 -1.23 10.62 -39.38 -0.42 -1.65 16 7 C -0.21 -2.96 10.77 -39.90 -0.43 -3.38 16 8 C 0.08 1.12 4.48 -35.40 -0.16 0.96 16 9 C 0.11 1.68 5.01 -4.98 -0.02 1.65 16 10 N -0.51 -9.93 4.37 -229.51 -1.00 -10.93 16 11 C 0.16 3.64 3.72 -4.97 -0.02 3.63 16 12 C -0.51 -13.78 8.70 -34.44 -0.30 -14.08 16 13 H 0.08 2.45 7.69 -52.49 -0.40 2.04 16 14 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -26.73 13.96 55.43 0.77 -25.96 16 16 Si 0.87 20.55 27.47 -169.99 -4.67 15.88 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 20 C 0.08 1.41 2.62 -67.71 -0.18 1.24 16 21 C -0.14 -2.49 9.25 37.15 0.34 -2.15 16 22 C -0.18 -2.92 7.94 37.16 0.30 -2.63 16 23 O -0.15 -2.26 8.00 4.73 0.04 -2.23 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.16 1.99 8.06 -52.48 -0.42 1.57 16 29 H 0.10 1.46 7.82 -51.93 -0.41 1.06 16 30 H 0.06 0.92 5.50 -51.93 -0.29 0.63 16 31 H -0.01 -0.14 6.58 -51.92 -0.34 -0.48 16 32 H 0.03 0.59 7.29 -51.93 -0.38 0.21 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.10 2.16 6.61 -51.93 -0.34 1.81 16 35 H 0.05 0.91 3.47 -51.93 -0.18 0.73 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.88 7.54 -51.93 -0.39 0.49 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.89 4.93 -51.93 -0.26 0.63 16 LS Contribution 326.38 15.07 4.92 4.92 Total: -1.00 -30.65 326.38 -6.15 -36.79 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.54 Total: 0.83 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 0.10 Total: -6.68 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.23 Total: -36.89 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.73 Total: -14.85 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.65 -6.15 -36.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535796137.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.145 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds