Wall clock time and date at job start Tue Mar 31 2020 06:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34769 * 117.00417 * 2 1 4 4 O 1.21541 * 119.99625 * 0.02562 * 3 2 1 5 5 C 1.47226 * 120.00551 * 179.97438 * 3 2 1 6 6 C 1.36498 * 127.19914 * 359.97438 * 5 3 2 7 7 O 1.33634 * 108.38300 * 180.02562 * 6 5 3 8 8 C 1.34223 * 110.92130 * 0.02562 * 7 6 5 9 9 C 1.50696 * 125.42237 * 180.02562 * 8 7 6 10 10 N 1.46908 * 109.47206 * 269.97451 * 9 8 7 11 11 C 1.46898 * 111.00033 * 170.00141 * 10 9 8 12 12 C 1.50698 * 109.47285 * 284.27219 * 11 10 9 13 13 H 1.07997 * 119.99848 * 4.02653 * 12 11 10 14 14 C 1.37875 * 119.99879 * 184.02451 * 12 11 10 15 15 N 1.31512 * 120.00078 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99672 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47376 * 90.00091 * 16 14 12 18 18 H 1.48504 * 109.47257 * 209.99872 * 16 14 12 19 19 H 1.48496 * 109.47422 * 330.00014 * 16 14 12 20 20 C 1.46899 * 110.99664 * 293.95734 * 10 9 8 21 21 C 1.53002 * 109.47241 * 171.00929 * 20 10 9 22 22 C 1.53003 * 109.47348 * 291.00550 * 20 10 9 23 23 C 1.34149 * 109.14913 * 359.97438 * 8 7 6 24 24 H 1.08990 * 109.47441 * 299.99932 * 1 2 3 25 25 H 1.08999 * 109.47128 * 60.00199 * 1 2 3 26 26 H 1.08996 * 109.46906 * 179.97438 * 1 2 3 27 27 H 1.07993 * 125.80989 * 359.97438 * 6 5 3 28 28 H 1.09005 * 109.47662 * 29.97377 * 9 8 7 29 29 H 1.08998 * 109.47195 * 149.97430 * 9 8 7 30 30 H 1.09006 * 109.47242 * 44.27771 * 11 10 9 31 31 H 1.09004 * 109.46432 * 164.27167 * 11 10 9 32 32 H 0.96997 * 119.99709 * 180.02562 * 15 14 12 33 33 H 1.08998 * 109.47512 * 51.00630 * 20 10 9 34 34 H 1.08993 * 109.47146 * 66.05530 * 21 20 10 35 35 H 1.09004 * 109.47386 * 186.05907 * 21 20 10 36 36 H 1.09006 * 109.46563 * 306.05838 * 21 20 10 37 37 H 1.09003 * 109.46574 * 59.99805 * 22 20 10 38 38 H 1.08993 * 109.47271 * 180.02562 * 22 20 10 39 39 H 1.08998 * 109.46880 * 300.00468 * 22 20 10 40 40 H 1.07998 * 127.03180 * 179.73458 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2201 0.0005 5 6 3.5341 1.2778 0.0006 6 6 4.4152 0.2353 0.0016 7 8 5.6558 0.7319 0.0024 8 6 5.6348 2.0740 0.0024 9 6 6.8490 2.9665 0.0027 10 7 7.2430 3.2570 1.3878 11 6 8.5514 3.9233 1.4343 12 6 9.6395 2.9119 1.1810 13 1 9.3823 1.8912 0.9390 14 6 10.9633 3.2895 1.2581 15 7 11.2764 4.5325 1.5522 16 14 12.3119 2.0360 0.9434 17 1 12.6554 2.0305 -0.5013 18 1 13.5151 2.3936 1.7369 19 1 11.8375 0.6872 1.3445 20 6 6.2188 4.0600 2.0690 21 6 6.5514 4.1529 3.5595 22 6 6.1874 5.4654 1.4651 23 6 4.3608 2.4942 0.0011 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 4.1541 -0.8126 0.0026 28 1 7.6692 2.4645 -0.5107 29 1 6.6149 3.8986 -0.5115 30 1 8.5914 4.6992 0.6697 31 1 8.6951 4.3734 2.4166 32 1 12.2077 4.7982 1.6061 33 1 5.2442 3.5886 1.9430 34 1 7.4733 4.7191 3.6915 35 1 5.7381 4.6558 4.0828 36 1 6.6798 3.1497 3.9663 37 1 5.9504 5.3993 0.4031 38 1 5.4278 6.0614 1.9708 39 1 7.1620 5.9369 1.5911 40 1 4.0132 3.5167 0.0048 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000544612682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:49 Heat of formation + Delta-G solvation = -66.442559 kcal Electronic energy + Delta-G solvation = -22200.242163 eV Core-core repulsion = 18789.286605 eV Total energy + Delta-G solvation = -3410.955559 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 3.45 seconds Orbital eigenvalues (eV) -42.49270 -40.18570 -37.85975 -36.48115 -32.97638 -32.75055 -31.94952 -30.01700 -28.02883 -26.98060 -26.49143 -24.60074 -23.94680 -22.42392 -20.98410 -20.27516 -18.84596 -17.33752 -17.17689 -16.70983 -16.49812 -15.98702 -15.86735 -14.85572 -14.76623 -14.17520 -14.10327 -13.60719 -13.41746 -13.28777 -13.03287 -12.80485 -12.33754 -12.21279 -12.07282 -11.79145 -11.56432 -11.13472 -10.98777 -10.93947 -10.83515 -10.70622 -10.59162 -10.49943 -10.29642 -9.79857 -9.60046 -9.27764 -8.52670 -8.42348 -7.33128 -6.03968 -4.05184 1.17363 2.11309 2.51129 3.00371 3.07079 3.31411 3.38147 3.42845 4.41643 4.61126 4.65155 4.88160 4.89510 4.95945 5.04156 5.28304 5.32038 5.46668 5.55359 5.59487 5.66890 5.80766 5.91021 5.97678 6.09865 6.15171 6.21595 6.30714 6.33402 6.42844 6.50189 6.75066 6.82067 7.11932 7.24466 7.30360 7.68013 7.79375 8.05468 8.12138 8.49833 9.02479 9.59185 11.06352 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024445 B = 0.004019 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.166378 B = 6965.026728 C = 7742.843534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.360 6.360 3 C 0.540 3.460 4 O -0.509 6.509 5 C -0.236 4.236 6 C 0.049 3.951 7 O -0.156 6.156 8 C 0.033 3.967 9 C 0.128 3.872 10 N -0.524 5.524 11 C 0.192 3.808 12 C -0.508 4.508 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.068 3.932 21 C -0.138 4.138 22 C -0.185 4.185 23 C -0.172 4.172 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.216 0.784 28 H 0.103 0.897 29 H 0.063 0.937 30 H -0.006 1.006 31 H 0.043 0.957 32 H 0.261 0.739 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.991 -6.795 -2.769 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.277 6.277 3 C 0.386 3.614 4 O -0.398 6.398 5 C -0.239 4.239 6 C -0.022 4.022 7 O -0.050 6.050 8 C -0.016 4.016 9 C 0.000 4.000 10 N -0.249 5.249 11 C 0.067 3.933 12 C -0.547 4.547 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.539 5.539 16 Si 0.724 3.276 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.041 4.041 21 C -0.196 4.196 22 C -0.244 4.244 23 C -0.192 4.192 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.233 0.767 28 H 0.121 0.879 29 H 0.081 0.919 30 H 0.012 0.988 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.720 -6.978 -2.477 18.286 hybrid contribution 0.224 0.290 -0.550 0.661 sum -16.496 -6.688 -3.027 18.055 Atomic orbital electron populations 1.23246 0.76032 1.03611 1.02639 1.86540 1.23538 1.32841 1.84821 1.20114 0.87686 0.81268 0.72357 1.90838 1.66589 1.35996 1.46344 1.20422 0.89886 0.94978 1.18568 1.24613 0.80820 0.99182 0.97591 1.83867 1.29561 1.22218 1.69325 1.22705 0.96899 0.79964 1.02052 1.20605 0.91861 0.94353 0.93212 1.62366 1.03951 1.46715 1.11880 1.19822 0.82681 0.93303 0.97448 1.21199 0.90060 0.96543 1.46857 0.91860 1.24964 0.98750 0.95331 0.95458 1.69947 1.18188 1.16550 1.49167 0.86525 0.81281 0.81720 0.78069 1.20766 1.21330 1.19752 1.21759 0.96014 0.91429 0.94930 1.21790 1.01026 1.02138 0.94633 1.22482 1.02520 0.98938 1.00463 1.22360 0.90501 0.98226 1.08134 0.91839 0.91893 0.88035 0.76742 0.87889 0.91936 0.98790 0.93871 0.92930 0.91084 0.91952 0.93532 0.92162 0.93246 0.93068 0.91518 0.82541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.37 16 2 O -0.36 -4.06 10.42 -40.68 -0.42 -4.49 16 3 C 0.54 7.58 7.95 34.38 0.27 7.86 16 4 O -0.51 -8.39 16.78 -19.30 -0.32 -8.72 16 5 C -0.24 -3.34 6.31 -103.30 -0.65 -3.99 16 6 C 0.05 0.61 11.94 30.10 0.36 0.97 16 7 O -0.16 -2.43 10.52 7.68 0.08 -2.35 16 8 C 0.03 0.54 6.21 -35.75 -0.22 0.32 16 9 C 0.13 2.32 5.18 -4.97 -0.03 2.29 16 10 N -0.52 -10.73 4.37 -229.51 -1.00 -11.73 16 11 C 0.19 4.68 3.38 -4.98 -0.02 4.67 16 12 C -0.51 -13.75 8.60 -34.44 -0.30 -14.04 16 13 H 0.06 1.71 7.68 -52.49 -0.40 1.31 16 14 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -25.97 13.29 55.43 0.74 -25.23 16 16 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 C 0.07 1.19 2.77 -67.71 -0.19 1.01 16 21 C -0.14 -2.39 9.00 37.16 0.33 -2.05 16 22 C -0.19 -3.04 8.54 37.16 0.32 -2.72 16 23 C -0.17 -2.64 9.26 -37.44 -0.35 -2.98 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.22 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.10 2.00 7.34 -51.93 -0.38 1.62 16 29 H 0.06 1.06 6.35 -51.93 -0.33 0.73 16 30 H -0.01 -0.15 7.32 -51.93 -0.38 -0.53 16 31 H 0.04 1.13 5.92 -51.93 -0.31 0.83 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 33 H 0.07 1.21 5.82 -51.93 -0.30 0.90 16 34 H 0.06 1.17 6.47 -51.93 -0.34 0.83 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.77 6.54 -51.93 -0.34 0.43 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.22 6.79 -51.93 -0.35 0.87 16 40 H 0.16 2.31 8.04 -52.49 -0.42 1.89 16 LS Contribution 334.86 15.07 5.05 5.05 Total: -1.00 -31.15 334.86 -6.05 -37.20 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.65 Total: -0.11 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 0.51 Total: -5.85 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: -0.27 Total: -36.96 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.67 Total: -15.56 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.15 -6.05 -37.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544612682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.242 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.45 seconds