Wall clock time and date at job start Tue Mar 31 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.47082 * 2 1 4 4 C 1.53002 * 109.46653 * 239.99986 * 2 1 3 5 5 C 1.53118 * 109.52598 * 54.62847 * 4 2 1 6 6 C 1.53166 * 109.21144 * 177.55884 * 5 4 2 7 7 N 1.46846 * 109.55427 * 300.86162 * 6 5 4 8 8 C 1.46907 * 110.99682 * 185.83696 * 7 6 5 9 9 C 1.50693 * 109.47211 * 300.45142 * 8 7 6 10 10 H 1.08002 * 119.99849 * 354.90103 * 9 8 7 11 11 C 1.37878 * 120.00021 * 174.90093 * 9 8 7 12 12 N 1.31518 * 120.00095 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00090 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47119 * 0.02562 * 13 11 9 15 15 H 1.48495 * 109.47271 * 120.00058 * 13 11 9 16 16 H 1.48504 * 109.47373 * 239.99905 * 13 11 9 17 17 C 1.46848 * 111.19979 * 61.74180 * 7 6 5 18 18 C 1.53033 * 109.52104 * 298.25532 * 17 7 6 19 19 C 1.53000 * 109.47270 * 120.00101 * 2 1 3 20 20 F 1.39896 * 109.47183 * 185.99887 * 19 2 1 21 21 F 1.39904 * 109.46922 * 306.00421 * 19 2 1 22 22 F 1.39904 * 109.46650 * 65.99976 * 19 2 1 23 23 H 1.08996 * 109.47139 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46539 * 299.99838 * 1 2 3 25 25 H 1.08999 * 109.47124 * 59.99770 * 1 2 3 26 26 H 0.96704 * 113.99581 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.52523 * 294.49963 * 4 2 1 28 28 H 1.08999 * 109.50037 * 297.56675 * 5 4 2 29 29 H 1.09003 * 109.49810 * 57.67570 * 5 4 2 30 30 H 1.08997 * 109.44856 * 180.83030 * 6 5 4 31 31 H 1.09005 * 109.43561 * 60.87546 * 6 5 4 32 32 H 1.08995 * 109.46972 * 60.45376 * 8 7 6 33 33 H 1.09003 * 109.46866 * 180.45304 * 8 7 6 34 34 H 0.96998 * 120.00137 * 179.97438 * 12 11 9 35 35 H 1.09003 * 109.45716 * 178.24020 * 17 7 6 36 36 H 1.09002 * 109.45460 * 58.27077 * 17 7 6 37 37 H 1.08998 * 109.50705 * 299.23503 * 18 17 7 38 38 H 1.09002 * 109.53417 * 179.14417 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.4229 -0.0827 -2.4966 6 6 1.9846 -0.7697 -3.7450 7 7 3.4458 -0.6257 -3.7698 8 6 4.0054 -1.1520 -5.0220 9 6 3.6522 -2.6108 -5.1561 10 1 3.1420 -3.1190 -4.3512 11 6 3.9805 -3.2967 -6.3062 12 7 4.6022 -2.6779 -7.2861 13 14 3.5421 -5.1048 -6.4727 14 1 2.8507 -5.5620 -5.2405 15 1 2.6448 -5.2911 -7.6411 16 1 4.7816 -5.8988 -6.6690 17 6 4.0630 -1.2724 -2.6048 18 6 3.5646 -0.6006 -1.3233 19 6 2.0401 -0.7213 1.2492 20 9 3.4322 -0.6031 1.3202 21 9 1.4645 -0.1462 2.3873 22 9 1.6897 -2.0741 1.1823 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 2.9704 1.4236 -0.0004 27 1 1.7597 -1.7735 -1.2023 28 1 0.3399 -0.2031 -2.4692 29 1 1.6710 0.9784 -2.5227 30 1 1.5589 -0.3081 -4.6359 31 1 1.7243 -1.8280 -3.7247 32 1 3.5919 -0.5990 -5.8654 33 1 5.0896 -1.0402 -5.0107 34 1 4.8335 -3.1606 -8.0951 35 1 5.1469 -1.1757 -2.6677 36 1 3.7928 -2.3283 -2.5902 37 1 3.8464 0.4523 -1.3310 38 1 4.0109 -1.0903 -0.4578 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547344727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:28 Heat of formation + Delta-G solvation = -210.321575 kcal Electronic energy + Delta-G solvation = -24062.282876 eV Core-core repulsion = 20103.231515 eV Total energy + Delta-G solvation = -3959.051361 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.28564 -47.80007 -47.70469 -39.55817 -37.07597 -33.76536 -32.41726 -30.89553 -30.23160 -26.88480 -26.43809 -24.15548 -22.56841 -21.92564 -20.66889 -19.37312 -18.71247 -18.49676 -18.36089 -16.43022 -16.41936 -15.26426 -14.87139 -14.59880 -14.52910 -14.23416 -14.15028 -14.08319 -13.89228 -13.88157 -13.64401 -13.39816 -13.04003 -12.89856 -12.63241 -12.23904 -12.13456 -11.66985 -11.42696 -11.09189 -10.99527 -10.85820 -10.68419 -10.54043 -10.39525 -10.09999 -9.83640 -9.75765 -9.46263 -8.46439 -7.20072 -6.05625 -4.15145 2.54858 3.23711 3.32234 3.35140 3.53963 3.57555 3.84471 4.17733 4.37624 4.50475 4.66932 4.93226 5.17893 5.19959 5.25470 5.39646 5.42620 5.58460 5.70128 5.83387 5.94605 6.05164 6.09010 6.19615 6.31248 6.45587 6.60783 6.69692 6.83827 7.15324 7.26553 7.49751 7.86901 8.03253 8.26434 8.28292 8.95696 9.52060 10.99247 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.028347 B = 0.004683 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.529709 B = 5978.030949 C = 6203.239685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.106 3.894 3 O -0.528 6.528 4 C -0.115 4.115 5 C -0.103 4.103 6 C 0.064 3.936 7 N -0.541 5.541 8 C 0.186 3.814 9 C -0.549 4.549 10 H 0.057 0.943 11 C 0.065 3.935 12 N -0.890 5.890 13 Si 0.888 3.112 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.067 3.933 18 C -0.132 4.132 19 C 0.422 3.578 20 F -0.179 7.179 21 F -0.181 7.181 22 F -0.178 7.178 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.386 0.614 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.035 0.965 33 H 0.027 0.973 34 H 0.262 0.738 35 H 0.067 0.933 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.688 5.459 15.853 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.063 3.937 3 O -0.336 6.336 4 C -0.133 4.133 5 C -0.141 4.141 6 C -0.064 4.064 7 N -0.265 5.265 8 C 0.061 3.939 9 C -0.588 4.588 10 H 0.075 0.925 11 C -0.138 4.138 12 N -0.529 5.529 13 Si 0.716 3.284 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.061 4.061 18 C -0.170 4.170 19 C 0.367 3.633 20 F -0.161 7.161 21 F -0.163 7.163 22 F -0.160 7.160 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.111 0.889 26 H 0.237 0.763 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.113 6.059 15.720 18.288 hybrid contribution 0.426 -2.321 0.014 2.360 sum -6.687 3.738 15.735 17.501 Atomic orbital electron populations 1.21912 0.89502 1.04016 1.05049 1.22463 0.97615 0.83910 0.89719 1.86622 1.28225 1.22619 1.96156 1.21926 0.97537 1.00458 0.93423 1.21688 0.98574 1.00881 0.92947 1.21862 0.89809 0.98744 0.96004 1.62463 1.03597 1.56488 1.03952 1.19751 0.95291 0.93072 0.85818 1.21784 1.38636 0.96654 1.01768 0.92514 1.24963 0.94896 0.98140 0.95768 1.69951 1.40285 1.36351 1.06303 0.86608 0.78240 0.85536 0.78047 1.19892 1.20918 1.20925 1.21778 0.98827 0.96257 0.89280 1.22054 0.93364 1.02020 0.99549 1.21789 0.75760 0.78337 0.87409 1.93116 1.30730 1.95701 1.96521 1.93170 1.84338 1.84374 1.54402 1.93180 1.91736 1.34567 1.96489 0.89937 0.90812 0.88900 0.76312 0.89490 0.91895 0.90730 0.91389 0.94328 0.94702 0.95470 0.92842 0.91461 0.94441 0.91255 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.09 37.16 0.30 -1.15 16 2 C 0.11 1.21 0.49 -90.62 -0.04 1.17 16 3 O -0.53 -6.01 12.38 -35.23 -0.44 -6.45 16 4 C -0.11 -1.51 1.58 -90.50 -0.14 -1.66 16 5 C -0.10 -1.46 4.73 -26.58 -0.13 -1.58 16 6 C 0.06 1.19 5.04 -3.77 -0.02 1.17 16 7 N -0.54 -11.12 4.86 -236.03 -1.15 -12.27 16 8 C 0.19 4.70 5.12 -4.98 -0.03 4.67 16 9 C -0.55 -14.80 7.72 -34.44 -0.27 -15.07 16 10 H 0.06 1.52 5.86 -52.49 -0.31 1.21 16 11 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 12 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 13 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 C 0.07 1.25 5.11 -3.84 -0.02 1.23 16 18 C -0.13 -1.88 4.39 -26.65 -0.12 -1.99 16 19 C 0.42 5.05 2.36 37.16 0.09 5.14 16 20 F -0.18 -2.18 13.71 2.25 0.03 -2.15 16 21 F -0.18 -2.21 16.56 2.25 0.04 -2.17 16 22 F -0.18 -2.26 16.18 2.25 0.04 -2.22 16 23 H 0.08 0.74 7.96 -51.93 -0.41 0.32 16 24 H 0.07 0.69 7.66 -51.93 -0.40 0.29 16 25 H 0.09 0.87 6.40 -51.93 -0.33 0.54 16 26 H 0.39 3.68 6.61 45.56 0.30 3.98 16 27 H 0.09 1.21 7.49 -51.93 -0.39 0.82 16 28 H 0.06 0.77 6.50 -51.93 -0.34 0.43 16 29 H 0.07 1.07 7.78 -51.93 -0.40 0.67 16 30 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 31 H 0.04 0.78 6.74 -51.93 -0.35 0.43 16 32 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.73 8.09 -51.93 -0.42 0.31 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 35 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 36 H 0.04 0.76 6.85 -51.93 -0.36 0.41 16 37 H 0.07 0.92 6.59 -51.93 -0.34 0.57 16 38 H 0.07 0.96 5.66 -51.93 -0.29 0.67 16 LS Contribution 300.77 15.07 4.53 4.53 Total: -1.00 -28.90 300.77 -6.14 -35.04 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -4.44 Total: 1.08 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -0.47 Total: -6.37 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.41 Total: -37.45 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.44 Total: -6.45 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 0.10 Total: -6.55 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.90 -6.14 -35.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547344727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.285 kcal (2) G-P(sol) polarization free energy of solvation -28.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds