Wall clock time and date at job start Tue Mar 31 2020 05:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29415 * 125.70037 * 2 1 4 4 N 1.26389 * 116.47926 * 179.97438 * 3 2 1 5 5 C 1.29413 * 116.47588 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.69790 * 180.02562 * 5 4 3 7 7 H 1.08991 * 109.47166 * 166.67555 * 6 5 4 8 8 C 1.52998 * 109.46752 * 286.67913 * 6 5 4 9 9 N 1.46901 * 109.46972 * 46.67344 * 6 5 4 10 10 C 1.46848 * 110.99941 * 178.83006 * 9 6 5 11 11 C 1.53034 * 109.52300 * 174.16089 * 10 9 6 12 12 C 1.53119 * 109.27679 * 59.18284 * 11 10 9 13 13 C 1.50700 * 109.52273 * 182.43645 * 12 11 10 14 14 H 1.08003 * 119.99564 * 119.68566 * 13 12 11 15 15 C 1.37879 * 120.00420 * 299.68382 * 13 12 11 16 16 N 1.31507 * 120.00221 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99551 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47226 * 90.00085 * 17 15 13 19 19 H 1.48498 * 109.47030 * 209.99546 * 17 15 13 20 20 H 1.48499 * 109.47722 * 329.99787 * 17 15 13 21 21 C 1.53120 * 109.16362 * 302.34479 * 12 11 10 22 22 C 1.46850 * 110.99691 * 54.62527 * 9 6 5 23 23 S 1.71211 * 108.60639 * 359.77256 * 5 4 3 24 24 H 1.09003 * 109.47675 * 90.01374 * 1 2 3 25 25 H 1.09001 * 109.47337 * 210.02073 * 1 2 3 26 26 H 1.09009 * 109.47104 * 330.01539 * 1 2 3 27 27 H 1.09000 * 109.47007 * 299.99080 * 8 6 5 28 28 H 1.08991 * 109.47577 * 59.99894 * 8 6 5 29 29 H 1.09008 * 109.46888 * 180.02562 * 8 6 5 30 30 H 1.08991 * 109.46758 * 294.18276 * 10 9 6 31 31 H 1.09007 * 109.45816 * 54.14896 * 10 9 6 32 32 H 1.08998 * 109.50754 * 299.24240 * 11 10 9 33 33 H 1.09000 * 109.50217 * 179.12380 * 11 10 9 34 34 H 1.09004 * 109.52169 * 62.24784 * 12 11 10 35 35 H 0.97000 * 120.00016 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.50244 * 297.71469 * 21 12 11 37 37 H 1.08996 * 109.50424 * 177.59255 * 21 12 11 38 38 H 1.08996 * 109.46650 * 305.85087 * 22 9 6 39 39 H 1.09003 * 109.46331 * 65.82035 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8484 0.0005 5 6 3.8935 -0.3875 0.0004 6 6 5.3232 -0.8643 0.0015 7 1 5.3513 -1.9278 0.2380 8 6 5.9391 -0.6324 -1.3797 9 7 6.0875 -0.1180 1.0100 10 6 7.4818 -0.5760 1.0588 11 6 8.2804 0.3168 2.0112 12 6 7.6540 0.2545 3.4070 13 6 8.3998 1.1780 4.3354 14 1 7.8814 1.9946 4.8161 15 6 9.7439 0.9806 4.5712 16 7 10.3948 1.7868 5.3810 17 14 10.6404 -0.4312 3.7393 18 1 11.1901 0.0291 2.4388 19 1 11.7508 -0.8940 4.6099 20 1 9.6933 -1.5513 3.5076 21 6 6.1886 0.6902 3.3202 22 6 5.4507 -0.2134 2.3298 23 16 2.5060 -1.3905 0.0061 24 1 -0.3634 -0.0002 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5136 27 1 5.3721 -1.1862 -2.1279 28 1 5.9110 0.4312 -1.6162 29 1 6.9731 -0.9777 -1.3791 30 1 7.5136 -1.6059 1.4141 31 1 7.9167 -0.5228 0.0607 32 1 8.2607 1.3447 1.6491 33 1 9.3116 -0.0330 2.0592 34 1 7.7087 -0.7662 3.7856 35 1 11.3404 1.6481 5.5465 36 1 6.1359 1.7239 2.9786 37 1 5.7254 0.6071 4.3034 38 1 4.4104 0.1032 2.2549 39 1 5.4919 -1.2451 2.6791 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558723641.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:52 Heat of formation + Delta-G solvation = 67.627798 kcal Electronic energy + Delta-G solvation = -20287.098329 eV Core-core repulsion = 17357.002120 eV Total energy + Delta-G solvation = -2930.096210 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.42795 -38.84552 -35.26556 -33.07782 -32.11486 -30.45789 -30.14464 -28.36762 -25.94596 -25.40579 -22.99743 -22.39977 -21.31270 -19.47511 -19.29482 -18.72965 -16.71977 -16.35942 -15.75762 -15.51593 -14.62276 -14.43585 -14.17631 -13.66943 -13.46045 -13.27562 -13.14266 -12.91037 -12.87676 -12.65224 -12.30350 -11.87307 -11.83242 -11.50769 -11.31054 -10.88008 -10.56867 -10.50800 -10.23961 -10.06472 -9.96222 -9.83663 -9.62636 -9.57864 -9.05857 -8.90837 -8.48724 -8.03685 -6.02744 -4.00912 0.30722 0.72912 1.20466 2.52035 3.28061 3.37303 3.40196 3.79832 4.03961 4.33499 4.43776 4.68472 4.85063 5.01747 5.04366 5.27349 5.29207 5.32830 5.36231 5.53542 5.58824 5.63782 5.73015 5.80194 5.84103 6.08464 6.08919 6.20827 6.35591 6.44746 6.74753 6.84537 6.92422 7.24806 7.30995 7.46112 7.65384 7.82265 8.53548 8.58608 9.02390 9.59944 11.10945 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.033227 B = 0.004398 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.492854 B = 6365.250597 C = 6806.112989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.023 4.023 3 N -0.261 5.261 4 N -0.227 5.227 5 C 0.005 3.995 6 C 0.161 3.839 7 H 0.058 0.942 8 C -0.141 4.141 9 N -0.513 5.513 10 C 0.054 3.946 11 C -0.115 4.115 12 C 0.014 3.986 13 C -0.509 4.509 14 H 0.073 0.927 15 C 0.068 3.932 16 N -0.903 5.903 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.298 1.298 20 H -0.267 1.267 21 C -0.093 4.093 22 C 0.058 3.942 23 S 0.143 5.857 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.021 0.979 35 H 0.263 0.737 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.096 -10.406 -14.101 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.301 4.301 3 N -0.099 5.099 4 N -0.063 5.063 5 C -0.275 4.275 6 C 0.048 3.952 7 H 0.076 0.924 8 C -0.199 4.199 9 N -0.240 5.240 10 C -0.073 4.073 11 C -0.153 4.153 12 C -0.005 4.005 13 C -0.547 4.547 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.542 5.542 17 Si 0.718 3.282 18 H -0.205 1.205 19 H -0.226 1.226 20 H -0.193 1.193 21 C -0.131 4.131 22 C -0.069 4.069 23 S 0.387 5.613 24 H 0.107 0.893 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -16.886 -9.501 -14.136 23.984 hybrid contribution 0.628 -1.479 -0.120 1.611 sum -16.258 -10.980 -14.256 24.251 Atomic orbital electron populations 1.20356 0.84090 1.04655 1.04150 1.29224 1.04153 0.91729 1.05035 1.71547 0.97253 1.26721 1.14396 1.71456 1.05343 1.16637 1.12861 1.29155 1.02194 0.92285 1.03885 1.20107 0.84199 0.95131 0.95722 0.92392 1.21891 1.00992 1.03931 0.93134 1.61976 1.01906 1.54371 1.05716 1.22317 0.87454 0.97174 1.00400 1.22020 0.96965 0.99593 0.96716 1.19187 0.92167 0.96982 0.92182 1.21058 0.94162 1.13800 1.25646 0.90870 1.25028 0.97548 0.95864 0.94873 1.69902 1.09528 1.37926 1.36802 0.86850 0.79136 0.83543 0.78718 1.20496 1.22616 1.19272 1.21464 0.96518 0.99106 0.96012 1.22202 0.97622 0.98442 0.88666 1.83622 0.98580 1.12626 1.66486 0.89279 0.89845 0.88787 0.92331 0.90510 0.90798 0.95457 0.91108 0.90966 0.93200 0.96084 0.92761 0.91522 0.92433 0.92552 0.95631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.48 36.00 0.38 -0.09 16 2 C -0.02 -0.25 7.53 -13.30 -0.10 -0.35 16 3 N -0.26 -3.93 11.66 32.57 0.38 -3.55 16 4 N -0.23 -3.71 11.35 32.58 0.37 -3.34 16 5 C 0.00 0.06 4.62 -13.29 -0.06 0.00 16 6 C 0.16 2.18 2.60 -68.86 -0.18 2.00 16 7 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 8 C -0.14 -1.63 8.99 37.16 0.33 -1.29 16 9 N -0.51 -8.69 4.51 -228.08 -1.03 -9.71 16 10 C 0.05 0.93 5.24 -3.84 -0.02 0.91 16 11 C -0.12 -2.49 4.84 -26.65 -0.13 -2.62 16 12 C 0.01 0.33 1.75 -91.65 -0.16 0.16 16 13 C -0.51 -14.49 9.14 -34.44 -0.31 -14.80 16 14 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 15 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 16 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 17 Si 0.89 22.00 24.36 -169.99 -4.14 17.86 16 18 H -0.28 -6.67 6.89 56.52 0.39 -6.28 16 19 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 20 H -0.27 -6.31 6.53 56.52 0.37 -5.95 16 21 C -0.09 -1.96 5.32 -26.65 -0.14 -2.10 16 22 C 0.06 1.04 5.21 -3.83 -0.02 1.02 16 23 S 0.14 1.45 23.04 -107.50 -2.48 -1.03 16 24 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.61 8.14 -51.92 -0.42 0.18 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.79 6.31 -51.92 -0.33 0.46 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 1.07 6.04 -51.93 -0.31 0.76 16 32 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 33 H 0.05 1.12 3.38 -51.93 -0.18 0.95 16 34 H 0.02 0.51 7.19 -51.93 -0.37 0.14 16 35 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 0.99 6.49 -51.93 -0.34 0.65 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 315.85 15.07 4.76 4.76 Total: -1.00 -32.82 315.85 -7.65 -40.48 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.78 Total: -2.94 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -0.51 Total: -15.29 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.49 Total: -43.84 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.86 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.48 Total: -1.03 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.82 -7.65 -40.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558723641.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.104 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds