Wall clock time and date at job start Tue Mar 31 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29408 * 125.70021 * 2 1 4 4 N 1.26396 * 116.47603 * 179.67992 * 3 2 1 5 5 C 1.29418 * 116.47691 * 0.53123 * 4 3 2 6 6 C 1.50696 * 125.69586 * 179.76664 * 5 4 3 7 7 H 1.09004 * 109.47128 * 194.69605 * 6 5 4 8 8 C 1.53000 * 109.47158 * 74.70091 * 6 5 4 9 9 N 1.46896 * 109.47693 * 314.69653 * 6 5 4 10 10 C 1.46850 * 111.00472 * 180.02562 * 9 6 5 11 11 C 1.53036 * 109.52384 * 185.84130 * 10 9 6 12 12 C 1.53114 * 109.27799 * 300.81924 * 11 10 9 13 13 C 1.50701 * 109.52177 * 177.56146 * 12 11 10 14 14 H 1.07995 * 120.00071 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99734 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00120 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99854 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47160 * 90.00207 * 17 15 13 19 19 H 1.48498 * 109.47228 * 210.00280 * 17 15 13 20 20 H 1.48503 * 109.47251 * 330.00703 * 17 15 13 21 21 C 1.53120 * 109.16161 * 57.65854 * 12 11 10 22 22 C 1.46846 * 110.99998 * 304.21450 * 9 6 5 23 23 S 1.71218 * 108.60426 * 359.51032 * 5 4 3 24 24 H 1.08998 * 109.46995 * 270.04123 * 1 2 3 25 25 H 1.09000 * 109.46734 * 30.03874 * 1 2 3 26 26 H 1.09003 * 109.47484 * 150.03779 * 1 2 3 27 27 H 1.09004 * 109.46705 * 299.99773 * 8 6 5 28 28 H 1.09000 * 109.47238 * 59.99691 * 8 6 5 29 29 H 1.09002 * 109.47595 * 180.02562 * 8 6 5 30 30 H 1.08995 * 109.45831 * 65.81919 * 10 9 6 31 31 H 1.08998 * 109.45719 * 305.85769 * 10 9 6 32 32 H 1.09004 * 109.50109 * 60.76189 * 11 10 9 33 33 H 1.08997 * 109.49831 * 180.87683 * 11 10 9 34 34 H 1.09002 * 109.52325 * 297.75085 * 12 11 10 35 35 H 0.96997 * 119.99690 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.50493 * 62.28140 * 21 12 11 37 37 H 1.09005 * 109.50270 * 182.40711 * 21 12 11 38 38 H 1.08993 * 109.46639 * 54.13954 * 22 9 6 39 39 H 1.09010 * 109.45973 * 294.17120 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2622 1.0509 0.0000 4 7 3.5098 0.8483 0.0063 5 6 3.8936 -0.3876 0.0014 6 6 5.3232 -0.8643 0.0022 7 1 5.3540 -1.9211 -0.2634 8 6 5.9245 -0.6711 1.3957 9 7 6.0981 -0.0906 -0.9770 10 6 7.4993 -0.5291 -1.0043 11 6 8.3052 0.3907 -1.9244 12 6 7.7089 0.3444 -3.3338 13 6 8.4612 1.2938 -4.2303 14 1 9.2831 1.8726 -3.8355 15 6 8.1009 1.4227 -5.5550 16 7 7.1005 0.7175 -6.0360 17 14 9.0330 2.6001 -6.6661 18 1 10.1690 1.8858 -7.3022 19 1 8.1203 3.1149 -7.7183 20 1 9.5507 3.7354 -5.8610 21 6 6.2363 0.7591 -3.2704 22 6 5.4906 -0.1719 -2.3115 23 16 2.5060 -1.3906 0.0010 24 1 -0.3633 0.0007 1.0277 25 1 -0.3633 0.8897 -0.5144 26 1 -0.3634 -0.8903 -0.5132 27 1 5.8937 0.3856 1.6614 28 1 5.3496 -1.2453 2.1223 29 1 6.9587 -1.0155 1.3963 30 1 7.5524 -1.5522 -1.3764 31 1 7.9125 -0.4875 0.0034 32 1 8.2639 1.4117 -1.5450 33 1 9.3419 0.0555 -1.9565 34 1 7.7854 -0.6687 -3.7287 35 1 6.8468 0.8085 -6.9677 36 1 6.1624 1.7859 -2.9123 37 1 5.7948 0.6870 -4.2644 38 1 4.4447 0.1292 -2.2534 39 1 5.5536 -1.1969 -2.6773 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558723642.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:56 Heat of formation + Delta-G solvation = 59.471808 kcal Electronic energy + Delta-G solvation = -20239.139220 eV Core-core repulsion = 17308.689340 eV Total energy + Delta-G solvation = -2930.449880 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.28666 -38.57430 -35.03054 -33.02012 -31.96135 -30.22189 -29.59098 -28.16498 -25.74269 -25.28702 -23.06827 -21.83601 -21.40491 -19.33933 -19.11912 -18.50049 -16.51233 -15.95901 -15.56845 -15.32035 -14.46780 -14.28445 -14.16271 -13.44193 -13.23942 -13.14029 -12.96648 -12.73061 -12.66140 -12.47156 -11.96997 -11.70257 -11.57739 -11.26561 -10.91764 -10.71087 -10.50447 -10.34238 -10.20481 -10.08715 -9.94928 -9.72053 -9.55545 -9.38194 -8.90787 -8.68807 -8.26015 -7.81821 -5.93922 -3.98879 0.44198 0.86297 1.33466 2.65661 3.34163 3.40942 3.45001 3.93279 4.25205 4.46991 4.48811 4.81375 4.97933 5.13697 5.14581 5.36634 5.41186 5.45255 5.52577 5.63956 5.75362 5.82757 5.87717 6.05052 6.11660 6.23097 6.34158 6.60244 6.63444 6.86800 7.08876 7.16979 7.43485 7.59376 7.64122 7.84360 8.08263 8.18145 8.51893 8.66894 9.04687 9.65451 11.12459 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.023987 B = 0.004508 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.001900 B = 6210.254837 C = 6944.458595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.024 4.024 3 N -0.261 5.261 4 N -0.228 5.228 5 C 0.009 3.991 6 C 0.160 3.840 7 H 0.056 0.944 8 C -0.140 4.140 9 N -0.515 5.515 10 C 0.058 3.942 11 C -0.105 4.105 12 C 0.048 3.952 13 C -0.509 4.509 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.893 5.893 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.101 4.101 22 C 0.060 3.940 23 S 0.141 5.859 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.020 0.980 35 H 0.259 0.741 36 H 0.045 0.955 37 H 0.092 0.908 38 H 0.048 0.952 39 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.744 -7.746 14.035 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.303 4.303 3 N -0.099 5.099 4 N -0.063 5.063 5 C -0.271 4.271 6 C 0.047 3.953 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.241 5.241 10 C -0.069 4.069 11 C -0.143 4.143 12 C 0.029 3.971 13 C -0.547 4.547 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.139 4.139 22 C -0.067 4.067 23 S 0.384 5.616 24 H 0.106 0.894 25 H 0.112 0.888 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -10.814 -6.911 14.006 18.996 hybrid contribution 0.375 -0.163 -1.041 1.119 sum -10.439 -7.073 12.965 18.086 Atomic orbital electron populations 1.20342 0.84173 1.04621 1.04028 1.29195 1.04094 0.91761 1.05275 1.71534 0.97313 1.26764 1.14326 1.71448 1.05260 1.16668 1.12965 1.29164 1.02212 0.92187 1.03533 1.20101 0.84286 0.95014 0.95919 0.92585 1.21890 1.01003 1.03723 0.93251 1.62053 1.01855 1.53272 1.06925 1.22250 0.87531 0.97272 0.99860 1.21675 0.97072 0.98448 0.97124 1.18692 0.91817 0.96706 0.89846 1.21205 1.15592 1.23696 0.94244 0.92695 1.24966 0.95121 0.95841 0.98073 1.69876 1.27753 1.41136 1.14469 0.86632 0.79667 0.81440 0.80485 1.20824 1.21326 1.19906 1.21638 0.97873 0.96545 0.97844 1.22284 0.97681 0.98898 0.87860 1.83579 0.98706 1.12715 1.66591 0.89374 0.88849 0.89884 0.90697 0.92486 0.90840 0.95620 0.91591 0.92235 0.92963 0.96179 0.93147 0.93572 0.89014 0.93328 0.96028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.48 36.01 0.38 -0.17 16 2 C -0.02 -0.30 7.53 -13.30 -0.10 -0.40 16 3 N -0.26 -4.31 11.66 32.58 0.38 -3.93 16 4 N -0.23 -4.07 11.35 32.58 0.37 -3.70 16 5 C 0.01 0.14 4.67 -13.30 -0.06 0.07 16 6 C 0.16 2.35 2.60 -68.87 -0.18 2.17 16 7 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 8 C -0.14 -1.71 8.95 37.16 0.33 -1.37 16 9 N -0.51 -9.41 4.51 -228.08 -1.03 -10.44 16 10 C 0.06 1.02 5.22 -3.83 -0.02 1.00 16 11 C -0.11 -2.21 5.32 -26.65 -0.14 -2.36 16 12 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 13 C -0.51 -14.21 8.56 -34.44 -0.29 -14.50 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 16 N -0.89 -25.88 11.37 55.43 0.63 -25.25 16 17 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 C -0.10 -2.49 5.12 -26.64 -0.14 -2.62 16 22 C 0.06 1.24 5.22 -3.83 -0.02 1.22 16 23 S 0.14 1.62 23.04 -107.50 -2.48 -0.86 16 24 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.81 6.28 -51.93 -0.33 0.48 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.98 6.01 -51.93 -0.31 0.67 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.09 2.51 6.18 -51.93 -0.32 2.19 16 38 H 0.05 1.02 6.53 -51.93 -0.34 0.68 16 39 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 322.69 15.07 4.86 4.86 Total: -1.00 -31.50 322.69 -8.73 -40.23 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -5.91 Total: -3.25 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -0.54 Total: -14.33 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.35 Total: -43.33 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.48 Total: -0.86 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.50 -8.73 -40.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558723642.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.700 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds