Wall clock time and date at job start Tue Mar 31 2020 05:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47131 * 2 1 4 4 C 1.50699 * 109.47154 * 179.97438 * 3 2 1 5 5 N 1.30127 * 121.06759 * 270.02087 * 4 3 2 6 6 S 1.69946 * 105.76692 * 179.71602 * 5 4 3 7 7 C 1.72301 * 94.57133 * 0.34470 * 6 5 4 8 8 N 1.38326 * 127.49883 * 179.91867 * 7 6 5 9 9 C 1.46846 * 110.99750 * 123.89509 * 8 7 6 10 10 C 1.53040 * 109.51964 * 174.15840 * 9 8 7 11 11 C 1.53119 * 109.28089 * 59.17912 * 10 9 8 12 12 C 1.50702 * 109.52418 * 182.43997 * 11 10 9 13 13 H 1.07993 * 119.99704 * 119.68023 * 12 11 10 14 14 C 1.37875 * 119.99821 * 299.68364 * 12 11 10 15 15 N 1.31518 * 120.00073 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99773 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47239 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46907 * 119.99934 * 16 14 12 19 19 H 1.48502 * 109.46991 * 239.99992 * 16 14 12 20 20 C 1.53124 * 109.15841 * 302.34776 * 11 10 9 21 21 C 1.46846 * 111.00105 * 359.68380 * 8 7 6 22 22 N 1.31292 * 121.06108 * 90.00051 * 4 3 2 23 23 H 1.09002 * 109.47149 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47689 * 299.99993 * 1 2 3 25 25 H 1.08998 * 109.46966 * 60.00522 * 1 2 3 26 26 H 1.08997 * 109.47614 * 239.99517 * 2 1 3 27 27 H 1.09006 * 109.46657 * 119.99537 * 2 1 3 28 28 H 1.09002 * 109.47012 * 60.00003 * 3 2 1 29 29 H 1.08999 * 109.47156 * 299.99975 * 3 2 1 30 30 H 1.08996 * 109.46231 * 294.17586 * 9 8 7 31 31 H 1.09004 * 109.46418 * 54.14426 * 9 8 7 32 32 H 1.09004 * 109.50602 * 299.23671 * 10 9 8 33 33 H 1.08998 * 109.50366 * 179.12192 * 10 9 8 34 34 H 1.08999 * 109.51878 * 62.24548 * 11 10 9 35 35 H 0.96994 * 119.99901 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.49853 * 297.70868 * 20 11 10 37 37 H 1.08996 * 109.49839 * 177.59898 * 20 11 10 38 38 H 1.09001 * 109.45990 * 305.85669 * 21 8 7 39 39 H 1.08997 * 109.46419 * 65.82350 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.2180 1.4422 1.1155 6 16 5.8574 1.4342 0.6678 7 6 5.5374 1.4420 -1.0252 8 7 6.4593 1.4417 -2.0565 9 6 6.2350 0.3081 -2.9626 10 6 7.1749 0.4208 -4.1650 11 6 8.6253 0.4268 -3.6742 12 6 9.5538 0.5979 -4.8488 13 1 10.2167 1.4492 -4.8935 14 6 9.5569 -0.3325 -5.8663 15 7 8.7491 -1.3690 -5.8121 16 14 10.7073 -0.1201 -7.3227 17 1 11.5059 1.1193 -7.1460 18 1 11.6190 -1.2891 -7.4078 19 1 9.9109 -0.0213 -8.5722 20 6 8.8197 1.5878 -2.6949 21 6 7.8321 1.4413 -1.5351 22 7 4.2248 1.4423 -1.1238 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 6.4322 -0.6242 -2.4335 31 1 5.2011 0.3180 -3.3076 32 1 6.9689 1.3464 -4.7026 33 1 7.0192 -0.4290 -4.8296 34 1 8.8432 -0.5149 -3.1705 35 1 8.7515 -2.0237 -6.5277 36 1 8.6395 2.5317 -3.2093 37 1 9.8390 1.5717 -2.3093 38 1 7.9581 2.2742 -0.8434 39 1 8.0219 0.5036 -1.0128 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564639744.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:10 Heat of formation + Delta-G solvation = 35.735026 kcal Electronic energy + Delta-G solvation = -19722.716445 eV Core-core repulsion = 16791.237261 eV Total energy + Delta-G solvation = -2931.479184 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 3.76 seconds Orbital eigenvalues (eV) -40.33642 -38.71483 -35.09156 -34.14252 -32.03298 -30.67602 -30.29135 -28.33131 -26.28602 -23.80286 -22.77811 -22.28900 -21.39196 -19.39896 -19.11248 -18.56657 -16.88396 -16.35078 -15.41920 -15.03297 -14.77665 -14.65432 -14.40541 -13.90301 -13.28085 -13.05412 -12.77786 -12.66141 -12.50048 -12.18783 -11.90549 -11.67980 -11.45824 -11.29142 -11.19497 -11.02132 -10.84940 -10.64096 -10.55682 -10.42915 -10.20343 -9.69261 -9.60549 -9.23401 -9.18936 -8.90842 -8.43276 -8.20333 -6.09651 -4.15347 0.63209 1.21242 1.84429 2.68839 3.24743 3.27938 3.33691 3.36957 4.35154 4.37203 4.82605 4.87706 5.00659 5.21029 5.24958 5.33189 5.34514 5.52153 5.60971 5.63128 5.68214 5.74940 5.79520 5.88352 5.98054 6.04791 6.12940 6.22706 6.30152 6.51404 6.63114 6.72723 6.97436 7.12967 7.24230 7.61382 7.80682 7.83568 7.95850 8.31072 8.88000 9.50399 10.97063 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.028426 B = 0.003846 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.793892 B = 7278.142855 C = 8031.940524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.030 4.030 4 C 0.291 3.709 5 N -0.498 5.498 6 S 0.157 5.843 7 C 0.292 3.708 8 N -0.421 5.421 9 C 0.064 3.936 10 C -0.108 4.108 11 C 0.044 3.956 12 C -0.512 4.512 13 H 0.058 0.942 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.106 4.106 21 C 0.045 3.955 22 N -0.546 5.546 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.105 0.895 34 H 0.027 0.973 35 H 0.261 0.739 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.255 3.234 10.630 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.073 4.073 4 C 0.001 3.999 5 N -0.330 5.330 6 S 0.295 5.705 7 C -0.086 4.086 8 N -0.140 5.140 9 C -0.061 4.061 10 C -0.147 4.147 11 C 0.025 3.975 12 C -0.550 4.550 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.144 4.144 21 C -0.082 4.082 22 N -0.276 5.276 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.043 3.500 11.425 15.609 hybrid contribution 0.260 -0.398 -1.274 1.360 sum -9.782 3.102 10.151 14.434 Atomic orbital electron populations 1.21742 0.94963 1.01949 1.01986 1.21466 0.96153 0.95142 1.02869 1.20267 0.83860 0.98947 1.04223 1.23341 0.99553 0.94538 0.82502 1.77456 0.98021 1.31647 1.25909 1.85022 1.13088 1.69600 1.02834 1.27398 0.92480 0.93129 0.95590 1.58115 1.02555 1.41878 1.11465 1.22657 1.02388 0.87023 0.94076 1.21846 0.94967 1.03513 0.94353 1.18773 0.92583 0.92620 0.93485 1.21156 1.20770 1.08588 1.04519 0.92407 1.24969 0.95632 0.95086 0.98263 1.69848 1.37650 1.12156 1.33341 0.86533 0.80817 0.78070 0.82574 1.19772 1.21065 1.21002 1.21748 0.95803 1.02126 0.94673 1.22681 0.84912 1.01421 0.99178 1.67368 1.03733 1.27106 1.29373 0.92435 0.92592 0.92373 0.91259 0.91705 0.89355 0.88879 0.93581 0.90147 0.93025 0.87650 0.95471 0.92927 0.91688 0.91488 0.90583 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 3 C -0.03 -0.35 5.75 -27.88 -0.16 -0.51 16 4 C 0.29 4.43 6.82 -159.03 -1.08 3.35 16 5 N -0.50 -7.93 12.15 29.54 0.36 -7.57 16 6 S 0.16 2.40 22.17 -107.50 -2.38 0.01 16 7 C 0.29 4.96 7.02 -86.35 -0.61 4.35 16 8 N -0.42 -7.41 4.71 -174.57 -0.82 -8.24 16 9 C 0.06 1.20 5.39 -3.83 -0.02 1.18 16 10 C -0.11 -2.36 5.12 -26.65 -0.14 -2.49 16 11 C 0.04 1.00 2.16 -91.65 -0.20 0.80 16 12 C -0.51 -13.12 8.56 -34.44 -0.29 -13.41 16 13 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.62 5.31 -17.82 -0.09 1.52 16 15 N -0.89 -24.03 11.37 55.43 0.63 -23.40 16 16 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C -0.11 -1.97 5.32 -26.65 -0.14 -2.11 16 21 C 0.04 0.73 4.58 -3.84 -0.02 0.71 16 22 N -0.55 -9.30 10.37 -14.58 -0.15 -9.45 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.48 7.92 -51.93 -0.41 1.07 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.11 2.57 6.17 -51.93 -0.32 2.24 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.08 7.60 -51.93 -0.39 0.69 16 39 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 327.03 15.07 4.93 4.93 Total: -1.00 -27.37 327.03 -11.17 -38.54 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -6.16 Total: -1.43 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -2.54 Total: -8.77 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.02 Total: -48.65 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.38 Total: 0.01 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.37 -11.17 -38.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564639744.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.271 kcal (2) G-P(sol) polarization free energy of solvation -27.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.76 seconds