Wall clock time and date at job start Tue Mar 31 2020 05:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99912 * 2 1 4 4 H 1.48494 * 109.47043 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47284 * 300.00317 * 3 2 1 6 6 H 1.48503 * 109.47215 * 60.00121 * 3 2 1 7 7 C 1.37867 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00076 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99932 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46958 * 180.02562 * 9 7 2 11 11 C 1.53117 * 109.52114 * 175.00101 * 10 9 7 12 12 C 1.53044 * 109.27792 * 177.56078 * 11 10 9 13 13 N 1.46847 * 109.51335 * 300.82256 * 12 11 10 14 14 C 1.46901 * 111.00144 * 185.83239 * 13 12 11 15 15 C 1.50696 * 109.47104 * 170.00196 * 14 13 12 16 16 C 1.31053 * 125.01602 * 90.00328 * 15 14 13 17 17 N 1.36590 * 115.97930 * 180.02562 * 16 15 14 18 18 H 0.97000 * 122.73194 * 180.02562 * 17 16 15 19 19 C 1.35689 * 114.53062 * 0.02562 * 17 16 15 20 20 N 1.31022 * 125.59897 * 180.02562 * 19 17 16 21 21 S 1.75901 * 125.01514 * 269.69888 * 15 14 13 22 22 C 1.46830 * 111.21086 * 61.74856 * 13 12 11 23 23 C 1.53038 * 109.51757 * 298.25173 * 22 13 12 24 24 H 0.96999 * 119.99743 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47388 * 60.00147 * 9 7 2 26 26 H 1.08997 * 109.47232 * 299.99966 * 9 7 2 27 27 H 1.08998 * 109.52583 * 54.87512 * 10 9 7 28 28 H 1.09001 * 109.50874 * 57.62258 * 11 10 9 29 29 H 1.09002 * 109.53469 * 297.51379 * 11 10 9 30 30 H 1.09002 * 109.46396 * 60.83566 * 12 11 10 31 31 H 1.08994 * 109.46485 * 180.81491 * 12 11 10 32 32 H 1.09001 * 109.46985 * 290.00439 * 14 13 12 33 33 H 1.09002 * 109.46593 * 50.00429 * 14 13 12 34 34 H 1.07999 * 122.00666 * 0.02562 * 16 15 14 35 35 H 0.96996 * 120.00677 * 179.97438 * 20 19 17 36 36 H 1.08995 * 109.46742 * 178.23410 * 22 13 12 37 37 H 1.09004 * 109.45381 * 58.25744 * 22 13 12 38 38 H 1.08997 * 109.50308 * 299.23764 * 23 22 13 39 39 H 1.08996 * 109.53785 * 179.13596 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4850 -4.9851 0.1252 12 6 2.4793 -6.1470 0.0634 13 7 3.2097 -6.1004 -1.2096 14 6 4.0739 -7.2782 -1.3642 15 6 4.6144 -7.3236 -2.7702 16 6 5.7320 -6.7644 -3.1646 17 7 6.0460 -6.9209 -4.4847 18 1 6.8495 -6.5485 -4.8804 19 6 5.1424 -7.6398 -5.1973 20 7 5.2278 -7.9209 -6.4742 21 16 3.8419 -8.1414 -4.1225 22 6 3.9851 -4.8595 -1.3321 23 6 3.0359 -3.6593 -1.3119 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8897 27 1 2.9312 -3.5548 0.8397 28 1 0.7706 -5.0737 -0.6933 29 1 0.9537 -5.0112 1.0766 30 1 3.1849 -6.0655 0.8902 31 1 1.9397 -7.0911 0.1382 32 1 4.9022 -7.2162 -0.6584 33 1 3.4958 -8.1812 -1.1678 34 1 6.3666 -6.2130 -2.4866 35 1 4.5325 -8.4436 -6.9033 36 1 4.5392 -4.8686 -2.2706 37 1 4.6836 -4.7842 -0.4986 38 1 2.3458 -3.7269 -2.1529 39 1 3.6123 -2.7373 -1.3873 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564973422.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:08 Heat of formation + Delta-G solvation = 36.019838 kcal Electronic energy + Delta-G solvation = -19644.862890 eV Core-core repulsion = 16713.396056 eV Total energy + Delta-G solvation = -2931.466834 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.03016 -38.67534 -35.20443 -33.84527 -32.42078 -30.78672 -30.23354 -27.92941 -25.47434 -24.33015 -23.29878 -22.56063 -20.70178 -19.70845 -18.98412 -18.76268 -17.24981 -16.27514 -15.87866 -15.72590 -14.84706 -14.67156 -14.46565 -14.44762 -13.76216 -13.50604 -13.25354 -12.80437 -12.40112 -12.10919 -11.93449 -11.61096 -11.23486 -11.10557 -10.93509 -10.77246 -10.65012 -10.60957 -10.28070 -9.95181 -9.72766 -9.66451 -9.53486 -9.05130 -8.86448 -8.32524 -8.15837 -7.52310 -5.96976 -3.98419 1.12621 1.37114 1.70544 2.12870 2.70689 3.31382 3.39193 3.42125 4.12261 4.47523 4.59675 4.89746 5.05470 5.22646 5.32426 5.38143 5.39604 5.46126 5.56258 5.68588 5.73416 5.86093 5.95002 6.11881 6.22375 6.31978 6.43269 6.57504 6.66408 6.88518 6.98013 7.09905 7.20374 7.27909 7.35038 7.71570 7.74334 7.88328 8.04093 8.46899 9.08468 9.65117 11.14413 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.023489 B = 0.003695 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.780324 B = 7576.615016 C = 8183.373450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.027 3.973 10 C -0.081 4.081 11 C -0.112 4.112 12 C 0.061 3.939 13 N -0.532 5.532 14 C 0.134 3.866 15 C -0.199 4.199 16 C 0.087 3.913 17 N -0.619 5.619 18 H 0.424 0.576 19 C 0.387 3.613 20 N -0.737 5.737 21 S -0.001 6.001 22 C 0.054 3.946 23 C -0.099 4.099 24 H 0.259 0.741 25 H 0.017 0.983 26 H 0.014 0.986 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.029 0.971 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.179 0.821 35 H 0.358 0.642 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.062 0.938 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.994 -17.172 -4.221 20.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.150 4.150 12 C -0.066 4.066 13 N -0.257 5.257 14 C 0.004 3.996 15 C -0.322 4.322 16 C -0.045 4.045 17 N -0.244 5.244 18 H 0.263 0.737 19 C -0.002 4.002 20 N -0.380 5.380 21 S 0.236 5.764 22 C -0.074 4.074 23 C -0.137 4.137 24 H 0.068 0.932 25 H 0.035 0.965 26 H 0.032 0.968 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.196 0.804 35 H 0.178 0.822 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.013 -17.588 -5.475 20.966 hybrid contribution 1.629 1.577 0.939 2.454 sum 11.642 -16.011 -4.536 20.309 Atomic orbital electron populations 1.69976 1.06016 1.26331 1.51204 1.25017 0.94792 0.99123 0.95574 0.86610 0.80104 0.84178 0.77537 1.19829 1.21095 1.21118 1.21287 0.92919 0.91043 1.49938 0.92697 1.19120 0.93642 0.91064 0.97124 1.21233 0.97886 0.94783 0.96067 1.21694 0.97538 0.94175 1.01570 1.22108 0.96287 0.99619 0.88629 1.61917 1.27738 1.01309 1.34763 1.20331 0.95626 0.95091 0.88511 1.22911 0.98783 1.09984 1.00546 1.20495 0.98317 1.00983 0.84706 1.41607 1.24148 1.51279 1.07406 0.73662 1.24114 0.90435 0.92759 0.92934 1.68946 1.35761 1.29348 1.03932 1.85777 1.28006 1.60622 1.01958 1.22262 0.95517 0.89960 0.99649 1.21532 0.97870 0.95374 0.98893 0.93155 0.96509 0.96787 0.93063 0.91544 0.92061 0.95229 0.91525 0.93218 0.89728 0.80358 0.82212 0.91580 0.95463 0.91885 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.18 8.45 -34.44 -0.29 -14.47 16 8 H 0.05 1.47 7.08 -52.49 -0.37 1.10 16 9 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 10 C -0.08 -1.60 2.20 -90.49 -0.20 -1.80 16 11 C -0.11 -1.87 5.38 -26.65 -0.14 -2.01 16 12 C 0.06 0.82 5.46 -3.83 -0.02 0.80 16 13 N -0.53 -7.08 4.65 -236.13 -1.10 -8.17 16 14 C 0.13 1.38 5.44 -4.98 -0.03 1.36 16 15 C -0.20 -2.04 5.38 -36.04 -0.19 -2.24 16 16 C 0.09 0.74 9.53 -17.16 -0.16 0.58 16 17 N -0.62 -5.58 5.66 -13.88 -0.08 -5.66 16 18 H 0.42 2.95 8.96 -40.82 -0.37 2.59 16 19 C 0.39 4.33 8.75 -89.35 -0.78 3.55 16 20 N -0.74 -8.78 14.18 30.43 0.43 -8.35 16 21 S 0.00 -0.01 23.35 -107.50 -2.51 -2.52 16 22 C 0.05 0.76 5.24 -3.84 -0.02 0.74 16 23 C -0.10 -1.80 5.15 -26.65 -0.14 -1.94 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.79 8.01 -51.93 -0.42 0.37 16 32 H 0.05 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.08 0.82 7.99 -51.93 -0.41 0.41 16 34 H 0.18 1.05 8.01 -52.49 -0.42 0.63 16 35 H 0.36 3.79 8.92 -40.82 -0.36 3.43 16 36 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 37 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.40 7.05 -51.93 -0.37 1.03 16 LS Contribution 326.39 15.07 4.92 4.92 Total: -1.00 -31.24 326.39 -10.79 -42.03 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.97 Total: 0.78 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -2.20 Total: -13.38 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.01 Total: -48.33 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.51 Total: -2.52 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.24 -10.79 -42.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564973422.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.049 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds