Wall clock time and date at job start Tue Mar 31 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47003 * 2 1 4 4 H 1.09004 * 109.46778 * 304.70804 * 3 2 1 5 5 C 1.50703 * 109.47387 * 184.70853 * 3 2 1 6 6 H 1.07995 * 119.99893 * 239.99690 * 5 3 2 7 7 C 1.37877 * 119.99811 * 59.99773 * 5 3 2 8 8 N 1.31510 * 119.99909 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99836 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47388 * 60.00007 * 9 7 5 11 11 H 1.48501 * 109.47215 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47246 * 299.99942 * 9 7 5 13 13 N 1.46901 * 109.47522 * 64.70552 * 3 2 1 14 14 C 1.46894 * 111.00270 * 215.06018 * 13 3 2 15 15 H 1.08997 * 109.47207 * 33.18155 * 14 13 3 16 16 C 1.53003 * 109.46660 * 273.18465 * 14 13 3 17 17 C 1.50694 * 109.47240 * 153.18646 * 14 13 3 18 18 C 1.35169 * 125.60737 * 219.71728 * 17 14 13 19 19 C 1.40318 * 107.12757 * 179.84970 * 18 17 14 20 20 C 1.36638 * 106.69931 * 0.40425 * 19 18 17 21 21 C 1.46464 * 125.99427 * 179.72936 * 20 19 18 22 22 O 1.21616 * 120.00206 * 0.02562 * 21 20 19 23 23 O 1.34906 * 119.99811 * 180.02562 * 21 20 19 24 24 C 1.45203 * 116.99771 * 180.02562 * 23 21 20 25 25 O 1.33910 * 125.61219 * 40.02282 * 17 14 13 26 26 H 1.08995 * 109.47193 * 54.53964 * 1 2 3 27 27 H 1.09007 * 109.47018 * 174.54061 * 1 2 3 28 28 H 1.09000 * 109.47129 * 294.53500 * 1 2 3 29 29 H 1.08998 * 109.47669 * 239.99697 * 2 1 3 30 30 H 1.09005 * 109.47007 * 119.99454 * 2 1 3 31 31 H 0.97006 * 119.99546 * 180.02562 * 8 7 5 32 32 H 1.00901 * 110.99818 * 339.00978 * 13 3 2 33 33 H 1.09004 * 109.46852 * 180.02562 * 16 14 13 34 34 H 1.09005 * 109.47228 * 299.99532 * 16 14 13 35 35 H 1.08994 * 109.47398 * 60.00121 * 16 14 13 36 36 H 1.07999 * 126.43959 * 359.95516 * 18 17 14 37 37 H 1.07996 * 126.64991 * 180.13758 * 19 18 17 38 38 H 1.09003 * 109.46859 * 299.99905 * 24 23 21 39 39 H 1.08998 * 109.47242 * 59.99750 * 24 23 21 40 40 H 1.09001 * 109.46839 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6093 1.9801 -0.8449 5 6 3.5424 1.4442 -0.1166 6 1 4.1439 1.8902 0.6616 7 6 4.1491 0.8764 -1.2169 8 7 3.4166 0.3330 -2.1643 9 14 6.0115 0.8779 -1.3611 10 1 6.5978 0.1451 -0.2102 11 1 6.4105 0.2114 -2.6267 12 1 6.5069 2.2778 -1.3608 13 7 1.6453 2.1015 1.2522 14 6 1.3358 3.5196 1.0260 15 1 0.8999 3.6427 0.0346 16 6 2.6211 4.3438 1.1239 17 6 0.3553 3.9922 2.0682 18 6 -0.6844 4.8277 1.8491 19 6 -1.3388 5.0041 3.0777 20 6 -0.6512 4.2649 3.9985 21 6 -0.9707 4.1515 5.4233 22 8 -1.9255 4.7490 5.8819 23 8 -0.2057 3.3842 6.2271 24 6 -0.5817 3.3180 7.6280 25 8 0.3741 3.6582 3.3648 26 1 -0.3633 0.5962 -0.8370 27 1 -0.3633 -1.0231 -0.0978 28 1 -0.3633 0.4267 0.9349 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8435 -0.0668 -2.9382 32 1 0.8660 1.6254 1.6813 33 1 2.3914 5.3962 0.9565 34 1 3.0571 4.2208 2.1154 35 1 3.3303 4.0020 0.3702 36 1 -0.9607 5.2742 0.9053 37 1 -2.2135 5.6104 3.2610 38 1 -0.5495 4.3180 8.0605 39 1 -1.5915 2.9170 7.7147 40 1 0.1141 2.6696 8.1607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565783354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:04 Heat of formation + Delta-G solvation = -71.620788 kcal Electronic energy + Delta-G solvation = -22225.568306 eV Core-core repulsion = 18814.388202 eV Total energy + Delta-G solvation = -3411.180104 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.70412 -40.26742 -36.96238 -36.64528 -33.72098 -32.98563 -31.70874 -30.00886 -28.55760 -27.53488 -26.49817 -24.03839 -22.88265 -21.87408 -21.19022 -20.03424 -19.58917 -18.43969 -17.16316 -16.81887 -16.33434 -15.91979 -15.75900 -14.87883 -14.31864 -14.02364 -13.67312 -13.49670 -13.34442 -13.16153 -12.92649 -12.71147 -12.49051 -12.36012 -12.15699 -11.46171 -11.28492 -11.19338 -11.08684 -11.00698 -10.96133 -10.79046 -10.61576 -10.05329 -9.93656 -9.73908 -9.69787 -9.16952 -8.55310 -8.36325 -7.40789 -5.99592 -4.03140 0.82061 2.25684 2.27284 2.83609 2.99915 3.33084 3.37774 3.41228 4.41620 4.54371 4.78916 4.85862 4.91027 4.98927 5.17290 5.30080 5.31654 5.52629 5.63656 5.74130 5.82307 5.87576 6.07277 6.10295 6.12075 6.25473 6.28573 6.35606 6.52540 6.77178 6.90403 6.91780 6.99211 7.10926 7.36877 7.53895 7.71886 7.88242 8.18479 8.33682 8.62273 9.04158 9.61543 11.05816 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022720 B = 0.003957 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.104292 B = 7074.953881 C = 7148.705852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.218 3.782 4 H 0.010 0.990 5 C -0.491 4.491 6 H 0.065 0.935 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.164 3.836 15 H 0.074 0.926 16 C -0.138 4.138 17 C 0.063 3.937 18 C -0.238 4.238 19 C -0.096 4.096 20 C -0.090 4.090 21 C 0.557 3.443 22 O -0.497 6.497 23 O -0.345 6.345 24 C 0.037 3.963 25 O -0.132 6.132 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.033 0.967 29 H 0.102 0.898 30 H 0.042 0.958 31 H 0.260 0.740 32 H 0.325 0.675 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.354 6.897 10.809 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.111 3.889 4 H 0.028 0.972 5 C -0.530 4.530 6 H 0.083 0.917 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.310 5.310 14 C 0.054 3.946 15 H 0.092 0.908 16 C -0.195 4.195 17 C 0.008 3.992 18 C -0.257 4.257 19 C -0.116 4.116 20 C -0.140 4.140 21 C 0.403 3.597 22 O -0.388 6.388 23 O -0.261 6.261 24 C -0.057 4.057 25 O -0.025 6.025 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.120 0.880 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.144 0.856 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.177 0.823 37 H 0.179 0.821 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.738 6.880 11.166 15.228 hybrid contribution -0.156 -0.006 -0.472 0.497 sum -7.894 6.874 10.694 14.964 Atomic orbital electron populations 1.21895 0.99591 0.99899 0.99488 1.21868 0.91202 1.00499 1.03372 1.19326 0.95768 0.89904 0.83859 0.97211 1.21200 0.90915 1.36274 1.04619 0.91701 1.24961 0.98102 0.95602 0.95855 1.69855 1.34895 1.39136 1.09772 0.86613 0.85791 0.78169 0.77120 1.20330 1.21545 1.20375 1.60897 1.40820 0.99184 1.30126 1.20445 0.91598 0.92067 0.90532 0.90839 1.21873 0.96895 0.96768 1.04009 1.23759 0.97283 0.95789 0.82362 1.21628 0.98582 1.05677 0.99824 1.21908 1.00027 0.98433 0.91245 1.20587 0.95417 1.06949 0.91026 1.19205 0.79927 0.76219 0.84315 1.90916 1.28133 1.44967 1.74740 1.86721 1.53993 1.63335 1.22037 1.23341 1.02084 1.03053 0.77222 1.84202 1.41929 1.56218 1.20197 0.93810 0.94230 0.94799 0.87983 0.93916 0.93006 0.85647 0.93664 0.92246 0.89236 0.82288 0.82131 0.91699 0.91656 0.87676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.68 37.16 0.36 -2.48 16 2 C -0.13 -2.96 5.28 -26.73 -0.14 -3.10 16 3 C 0.22 5.10 2.04 -68.86 -0.14 4.96 16 4 H 0.01 0.26 7.24 -51.93 -0.38 -0.12 16 5 C -0.49 -12.77 7.57 -34.44 -0.26 -13.03 16 6 H 0.06 1.72 7.61 -52.49 -0.40 1.32 16 7 C 0.06 1.46 5.29 -17.82 -0.09 1.37 16 8 N -0.90 -24.51 11.29 55.43 0.63 -23.88 16 9 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.68 -13.74 6.14 -102.17 -0.63 -14.36 16 14 C 0.16 2.86 3.07 -68.87 -0.21 2.65 16 15 H 0.07 1.28 7.30 -51.93 -0.38 0.90 16 16 C -0.14 -2.36 9.27 37.16 0.34 -2.01 16 17 C 0.06 0.99 5.79 -35.40 -0.20 0.79 16 18 C -0.24 -3.20 10.76 -39.89 -0.43 -3.63 16 19 C -0.10 -1.28 10.62 -39.38 -0.42 -1.70 16 20 C -0.09 -1.36 7.18 -36.85 -0.26 -1.62 16 21 C 0.56 8.16 7.93 34.04 0.27 8.43 16 22 O -0.50 -7.64 16.66 -19.35 -0.32 -7.96 16 23 O -0.34 -4.68 10.58 -42.50 -0.45 -5.12 16 24 C 0.04 0.33 10.57 101.05 1.07 1.40 16 25 O -0.13 -2.21 10.65 4.74 0.05 -2.16 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.03 0.58 6.66 -51.93 -0.35 0.24 16 29 H 0.10 2.60 5.96 -51.93 -0.31 2.29 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.33 6.33 6.12 -39.29 -0.24 6.09 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.73 6.80 -51.93 -0.35 1.38 16 36 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 338.47 15.07 5.10 5.10 Total: -1.00 -28.63 338.47 -6.53 -35.16 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.77 Total: 5.42 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.12 Total: -7.98 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.00 Total: -38.25 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.72 Total: -15.25 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.63 -6.53 -35.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565783354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.460 kcal (2) G-P(sol) polarization free energy of solvation -28.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds