Wall clock time and date at job start Tue Mar 31 2020 06:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47341 * 2 1 4 4 H 1.08999 * 109.47195 * 56.49758 * 3 2 1 5 5 C 1.50699 * 109.47366 * 176.49754 * 3 2 1 6 6 H 1.08001 * 120.00138 * 120.00350 * 5 3 2 7 7 C 1.37879 * 119.99739 * 299.99898 * 5 3 2 8 8 N 1.31516 * 120.00039 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99859 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47102 * 90.00250 * 9 7 5 11 11 H 1.48503 * 109.47284 * 209.99978 * 9 7 5 12 12 H 1.48500 * 109.47378 * 330.00283 * 9 7 5 13 13 N 1.46900 * 109.47344 * 296.50021 * 3 2 1 14 14 C 1.46897 * 111.00365 * 149.88089 * 13 3 2 15 15 H 1.08996 * 109.47050 * 326.40065 * 14 13 3 16 16 C 1.53000 * 109.47341 * 86.40670 * 14 13 3 17 17 C 1.50704 * 109.47099 * 206.40421 * 14 13 3 18 18 C 1.35164 * 125.60912 * 140.26943 * 17 14 13 19 19 C 1.40312 * 107.12828 * 180.14713 * 18 17 14 20 20 C 1.36644 * 106.69808 * 359.60677 * 19 18 17 21 21 C 1.46469 * 125.99202 * 180.21044 * 20 19 18 22 22 O 1.21621 * 120.00192 * 359.97438 * 21 20 19 23 23 O 1.34901 * 119.99775 * 179.97438 * 21 20 19 24 24 C 1.45201 * 116.99966 * 179.97438 * 23 21 20 25 25 O 1.33912 * 125.60727 * 319.97462 * 17 14 13 26 26 H 1.08992 * 109.47284 * 175.29810 * 1 2 3 27 27 H 1.08994 * 109.47517 * 295.30294 * 1 2 3 28 28 H 1.09000 * 109.46627 * 55.30139 * 1 2 3 29 29 H 1.09005 * 109.47202 * 239.99732 * 2 1 3 30 30 H 1.08996 * 109.46980 * 120.00190 * 2 1 3 31 31 H 0.97003 * 119.99693 * 180.02562 * 8 7 5 32 32 H 1.00906 * 110.99530 * 273.83380 * 13 3 2 33 33 H 1.09004 * 109.47300 * 59.99770 * 16 14 13 34 34 H 1.08991 * 109.47205 * 180.02562 * 16 14 13 35 35 H 1.09005 * 109.46991 * 299.99935 * 16 14 13 36 36 H 1.08007 * 126.43723 * 0.02562 * 18 17 14 37 37 H 1.07992 * 126.65172 * 179.87045 * 19 18 17 38 38 H 1.09000 * 109.47261 * 60.00130 * 24 23 21 39 39 H 1.08996 * 109.47141 * 179.97438 * 24 23 21 40 40 H 1.09005 * 109.47147 * 299.99909 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6264 1.9741 0.8569 5 6 3.5445 1.4433 0.0868 6 1 4.1306 1.8947 -0.7001 7 6 4.1728 0.8679 1.1709 8 7 3.4591 0.3178 2.1289 9 14 6.0377 0.8683 1.2781 10 1 6.4929 2.0951 1.9804 11 1 6.4906 -0.3294 2.0303 12 1 6.6124 0.8397 -0.0909 13 7 1.6207 2.1101 -1.2394 14 6 1.4289 3.5503 -1.0227 15 1 1.0556 3.7192 -0.0127 16 6 2.7645 4.2752 -1.2008 17 6 0.4327 4.0804 -2.0216 18 6 -0.5298 4.9938 -1.7644 19 6 -1.2327 5.2016 -2.9608 20 6 -0.6505 4.4006 -3.9024 21 6 -1.0522 4.2910 -5.3067 22 8 -1.9838 4.9509 -5.7260 23 8 -0.3889 3.4579 -6.1349 24 6 -0.8421 3.3998 -7.5131 25 8 0.3590 3.7280 -3.3115 26 1 -0.3633 -1.0241 -0.0842 27 1 -0.3634 0.4392 0.9290 28 1 -0.3632 0.5850 -0.8449 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.9012 -0.0867 2.8917 32 1 2.2819 1.9412 -1.9827 33 1 3.1378 4.1063 -2.2109 34 1 2.6223 5.3437 -1.0395 35 1 3.4851 3.8918 -0.4783 36 1 -0.7230 5.4722 -0.8155 37 1 -2.0687 5.8688 -3.1098 38 1 -0.7599 4.3885 -7.9646 39 1 -0.2247 2.6944 -8.0691 40 1 -1.8818 3.0732 -7.5402 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565783357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:11 Heat of formation + Delta-G solvation = -76.518184 kcal Electronic energy + Delta-G solvation = -22222.278436 eV Core-core repulsion = 18810.885965 eV Total energy + Delta-G solvation = -3411.392471 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.56201 -40.20202 -36.94503 -36.58655 -33.69620 -32.90063 -31.60366 -30.05417 -28.54305 -27.45884 -26.21888 -24.05297 -22.81027 -21.80544 -21.24073 -20.01533 -19.56281 -18.36824 -17.12135 -16.74647 -16.65532 -15.76192 -15.41680 -14.98575 -14.18438 -14.04235 -13.63764 -13.33059 -13.17010 -13.07351 -12.85182 -12.76363 -12.44639 -12.31496 -12.08182 -11.47117 -11.37603 -11.17689 -11.04275 -10.96473 -10.88396 -10.81677 -10.71163 -10.19753 -9.92903 -9.64834 -9.59863 -9.11851 -8.45436 -8.41823 -7.46912 -6.07974 -4.20259 0.93218 2.34216 2.41398 2.93228 3.11895 3.22036 3.30596 3.32903 4.32893 4.62740 4.87245 4.94184 4.97305 5.01765 5.17218 5.33958 5.37164 5.54350 5.63348 5.71086 5.86997 5.88770 6.10525 6.21450 6.29940 6.36414 6.42796 6.50092 6.68337 6.73059 7.02289 7.06834 7.15740 7.35848 7.49962 7.61492 7.70992 7.98854 8.00792 8.20318 8.50888 8.90305 9.47396 10.92960 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022889 B = 0.003951 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.981478 B = 7084.296045 C = 7126.577342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.034 0.966 5 C -0.547 4.547 6 H 0.058 0.942 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.681 5.681 14 C 0.160 3.840 15 H 0.108 0.892 16 C -0.179 4.179 17 C 0.090 3.910 18 C -0.246 4.246 19 C -0.094 4.094 20 C -0.096 4.096 21 C 0.558 3.442 22 O -0.500 6.500 23 O -0.346 6.346 24 C 0.037 3.963 25 O -0.135 6.135 26 H 0.025 0.975 27 H 0.035 0.965 28 H 0.050 0.950 29 H 0.032 0.968 30 H 0.091 0.909 31 H 0.262 0.738 32 H 0.338 0.662 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.064 0.936 39 H 0.104 0.896 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.569 7.340 -10.595 14.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.052 0.948 5 C -0.586 4.586 6 H 0.076 0.924 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.311 5.311 14 C 0.048 3.952 15 H 0.126 0.874 16 C -0.238 4.238 17 C 0.035 3.965 18 C -0.265 4.265 19 C -0.114 4.114 20 C -0.146 4.146 21 C 0.404 3.596 22 O -0.390 6.390 23 O -0.262 6.262 24 C -0.057 4.057 25 O -0.029 6.029 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.156 0.844 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.175 0.825 37 H 0.176 0.824 38 H 0.082 0.918 39 H 0.122 0.878 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.305 7.023 -10.664 14.711 hybrid contribution 1.718 0.392 0.099 1.765 sum -5.587 7.415 -10.565 14.065 Atomic orbital electron populations 1.21725 0.99042 0.98636 1.00337 1.21500 0.92047 0.99040 1.01834 1.19235 0.92990 0.91332 0.85516 0.94839 1.21849 0.92271 1.38193 1.06249 0.92352 1.24926 0.97997 0.94828 0.95647 1.69875 1.35041 1.37508 1.09635 0.86663 0.86001 0.77582 0.78157 1.20736 1.21178 1.19939 1.60899 1.53345 1.05491 1.11380 1.20267 0.90807 0.90798 0.93318 0.87439 1.22607 0.98016 0.99903 1.03245 1.23710 0.97300 0.93679 0.81830 1.21550 0.99762 1.05026 1.00180 1.21872 0.99893 0.98334 0.91289 1.20502 0.97446 1.04857 0.91767 1.19233 0.79611 0.76798 0.83967 1.90910 1.28120 1.44177 1.75808 1.86711 1.57242 1.59668 1.22615 1.23322 1.01180 1.03079 0.78109 1.84159 1.43166 1.53559 1.22048 0.95595 0.94586 0.93134 0.94923 0.89083 0.92793 0.84385 0.92758 0.93132 0.88877 0.82471 0.82350 0.91768 0.87772 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.85 37.16 0.37 -2.46 16 2 C -0.11 -2.43 5.44 -26.73 -0.15 -2.57 16 3 C 0.22 4.94 2.01 -68.87 -0.14 4.80 16 4 H 0.03 0.84 7.32 -51.93 -0.38 0.46 16 5 C -0.55 -13.50 7.15 -34.44 -0.25 -13.75 16 6 H 0.06 1.42 6.95 -52.49 -0.36 1.05 16 7 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 8 N -0.88 -23.66 11.30 55.43 0.63 -23.03 16 9 Si 0.89 20.09 29.54 -169.99 -5.02 15.06 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.68 -13.34 5.34 -102.18 -0.55 -13.89 16 14 C 0.16 2.70 3.05 -68.86 -0.21 2.49 16 15 H 0.11 1.82 7.34 -51.93 -0.38 1.44 16 16 C -0.18 -2.86 8.83 37.16 0.33 -2.53 16 17 C 0.09 1.44 6.16 -35.40 -0.22 1.22 16 18 C -0.25 -3.42 10.76 -39.90 -0.43 -3.85 16 19 C -0.09 -1.30 10.62 -39.38 -0.42 -1.72 16 20 C -0.10 -1.50 7.18 -36.84 -0.26 -1.76 16 21 C 0.56 8.40 7.93 34.05 0.27 8.67 16 22 O -0.50 -7.91 16.66 -19.36 -0.32 -8.23 16 23 O -0.35 -4.79 10.58 -42.49 -0.45 -5.24 16 24 C 0.04 0.34 10.57 101.05 1.07 1.41 16 25 O -0.14 -2.30 10.66 4.74 0.05 -2.25 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 1.00 7.58 -51.93 -0.39 0.61 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 2.33 5.98 -51.93 -0.31 2.02 16 31 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.34 6.73 8.01 -39.29 -0.31 6.42 16 33 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.68 6.27 -51.93 -0.33 1.36 16 36 H 0.16 1.80 8.06 -52.48 -0.42 1.38 16 37 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 339.22 15.07 5.11 5.11 Total: -1.00 -27.70 339.22 -6.51 -34.21 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.83 Total: 6.62 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -0.13 Total: -8.37 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.08 Total: -36.92 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.72 Total: -15.72 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.70 -6.51 -34.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565783357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.304 kcal (2) G-P(sol) polarization free energy of solvation -27.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds