Wall clock time and date at job start Tue Mar 31 2020 06:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47164 * 2 1 4 4 H 1.08997 * 109.47102 * 54.37795 * 3 2 1 5 5 C 1.50702 * 109.46598 * 174.37307 * 3 2 1 6 6 H 1.08002 * 119.99052 * 120.00168 * 5 3 2 7 7 C 1.37867 * 120.00230 * 299.99768 * 5 3 2 8 8 N 1.31516 * 120.00294 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99864 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47443 * 60.00266 * 9 7 5 11 11 H 1.48503 * 109.47115 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47445 * 299.99911 * 9 7 5 13 13 N 1.46900 * 109.46718 * 294.37142 * 3 2 1 14 14 C 1.46902 * 110.99160 * 155.69789 * 13 3 2 15 15 H 1.08999 * 109.47901 * 33.72776 * 14 13 3 16 16 C 1.52995 * 109.47353 * 273.71950 * 14 13 3 17 17 C 1.50713 * 109.46662 * 153.72531 * 14 13 3 18 18 C 1.35162 * 125.60442 * 219.71370 * 17 14 13 19 19 C 1.40311 * 107.12400 * 180.26925 * 18 17 14 20 20 C 1.36640 * 106.69971 * 359.97438 * 19 18 17 21 21 C 1.46477 * 125.99158 * 180.02562 * 20 19 18 22 22 O 1.21622 * 120.00037 * 359.97438 * 21 20 19 23 23 O 1.34902 * 119.99658 * 180.02562 * 21 20 19 24 24 C 1.45198 * 116.99874 * 179.97438 * 23 21 20 25 25 O 1.33909 * 125.60878 * 40.02690 * 17 14 13 26 26 H 1.09000 * 109.47029 * 305.66248 * 1 2 3 27 27 H 1.09000 * 109.47101 * 65.65651 * 1 2 3 28 28 H 1.08992 * 109.47332 * 185.66272 * 1 2 3 29 29 H 1.08997 * 109.47171 * 239.99831 * 2 1 3 30 30 H 1.08994 * 109.46905 * 119.99802 * 2 1 3 31 31 H 0.96997 * 119.99910 * 180.02562 * 8 7 5 32 32 H 1.00901 * 111.00022 * 31.74916 * 13 3 2 33 33 H 1.09001 * 109.47381 * 184.82957 * 16 14 13 34 34 H 1.08994 * 109.47580 * 304.83732 * 16 14 13 35 35 H 1.09006 * 109.46819 * 64.83364 * 16 14 13 36 36 H 1.07997 * 126.44542 * 0.24576 * 18 17 14 37 37 H 1.08000 * 126.65035 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.46749 * 180.02562 * 24 23 21 39 39 H 1.08998 * 109.47200 * 299.99885 * 24 23 21 40 40 H 1.08996 * 109.47311 * 59.99992 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5969 1.9846 0.8353 5 6 3.5406 1.4447 0.1393 6 1 4.1538 1.8865 -0.6322 7 6 4.1305 0.8829 1.2516 8 7 3.3838 0.3446 2.1909 9 14 5.9905 0.8862 1.4245 10 1 6.4851 2.2864 1.4249 11 1 6.3702 0.2274 2.7001 12 1 6.5948 0.1480 0.2865 13 7 1.6644 2.0946 -1.2616 14 6 1.6000 3.5535 -1.1012 15 1 2.3546 3.8738 -0.3828 16 6 0.2121 3.9500 -0.5940 17 6 1.8577 4.2167 -2.4297 18 6 2.5896 5.3368 -2.6213 19 6 2.5702 5.6128 -3.9968 20 6 1.8181 4.6341 -4.5831 21 6 1.5234 4.5154 -6.0130 22 8 1.9632 5.3367 -6.7948 23 8 0.7632 3.4956 -6.4625 24 6 0.5115 3.4411 -7.8914 25 8 1.3944 3.7966 -3.6138 26 1 -0.3633 0.5991 0.8349 27 1 -0.3633 0.4236 -0.9363 28 1 -0.3633 -1.0226 0.1014 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.7988 -0.0504 2.9735 32 1 0.7907 1.7303 -1.6108 33 1 0.1357 5.0367 -0.5565 34 1 -0.5477 3.5554 -1.2684 35 1 0.0596 3.5405 0.4047 36 1 3.0942 5.9116 -1.8589 37 1 3.0556 6.4386 -4.4956 38 1 -0.1110 2.5755 -8.1179 39 1 -0.0025 4.3498 -8.2048 40 1 1.4586 3.3573 -8.4243 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565783359.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:28 Heat of formation + Delta-G solvation = -74.147338 kcal Electronic energy + Delta-G solvation = -22219.894865 eV Core-core repulsion = 18808.605202 eV Total energy + Delta-G solvation = -3411.289663 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.52813 -40.18213 -37.05109 -36.56951 -33.74362 -32.87262 -31.67435 -29.95351 -28.64394 -27.52566 -26.19753 -24.20667 -22.89967 -21.79343 -21.19186 -19.97774 -19.63319 -18.33855 -17.08703 -16.72319 -16.26306 -15.83118 -15.44252 -15.05062 -14.20488 -14.15789 -13.78182 -13.35314 -13.23170 -13.04273 -12.84064 -12.72767 -12.59029 -12.31530 -12.27897 -11.80843 -11.46555 -11.13167 -11.05313 -10.95098 -10.88636 -10.81820 -10.68098 -10.01089 -9.89105 -9.81775 -9.68432 -9.18504 -8.40210 -8.37933 -7.40918 -6.01999 -4.06861 0.96188 2.36077 2.45480 2.96718 3.14419 3.31950 3.36463 3.40434 4.40620 4.63645 4.89218 4.95073 5.01841 5.02780 5.23739 5.29572 5.35255 5.45951 5.58758 5.68838 5.81534 5.92376 6.08314 6.12541 6.13239 6.16571 6.19991 6.37098 6.39267 6.46815 6.80346 7.01039 7.08474 7.10841 7.39341 7.63688 7.71524 7.85187 8.14109 8.31060 8.62982 9.00860 9.58815 11.03088 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018418 B = 0.004363 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.898841 B = 6415.644536 C = 6869.188207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.008 0.992 5 C -0.499 4.499 6 H 0.061 0.939 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.678 5.678 14 C 0.157 3.843 15 H 0.121 0.879 16 C -0.178 4.178 17 C 0.092 3.908 18 C -0.242 4.242 19 C -0.093 4.093 20 C -0.096 4.096 21 C 0.558 3.442 22 O -0.500 6.500 23 O -0.347 6.347 24 C 0.037 3.963 25 O -0.137 6.137 26 H 0.043 0.957 27 H 0.035 0.965 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.101 0.899 31 H 0.261 0.739 32 H 0.326 0.674 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.925 7.200 -10.822 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.025 0.975 5 C -0.538 4.538 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.310 5.310 14 C 0.045 3.955 15 H 0.138 0.862 16 C -0.237 4.237 17 C 0.036 3.964 18 C -0.261 4.261 19 C -0.113 4.113 20 C -0.146 4.146 21 C 0.404 3.596 22 O -0.390 6.390 23 O -0.263 6.263 24 C -0.057 4.057 25 O -0.031 6.031 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.119 0.881 31 H 0.071 0.929 32 H 0.145 0.855 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.176 0.824 37 H 0.177 0.823 38 H 0.122 0.878 39 H 0.082 0.918 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.338 7.041 -11.217 14.682 hybrid contribution 0.351 0.190 0.423 0.582 sum -5.987 7.231 -10.794 14.305 Atomic orbital electron populations 1.21890 0.99516 0.99861 0.99560 1.21766 0.91297 1.00108 1.03255 1.19222 0.95584 0.90173 0.83708 0.97488 1.21171 0.91140 1.37113 1.04343 0.92049 1.24931 0.98111 0.95444 0.95785 1.69853 1.34843 1.39188 1.09546 0.86611 0.85708 0.78218 0.77166 1.20364 1.21442 1.20296 1.60732 1.36289 1.00252 1.33714 1.20295 0.97706 0.90817 0.86645 0.86172 1.22536 0.96997 1.01855 1.02321 1.23560 0.93639 0.93227 0.85925 1.21563 1.07470 1.00736 0.96363 1.21880 0.97338 0.98237 0.93874 1.20484 1.10299 0.97057 0.86769 1.19231 0.75452 0.78908 0.85979 1.90909 1.50986 1.41766 1.55335 1.86705 1.64473 1.47376 1.27741 1.23317 1.02082 1.03358 0.76935 1.84134 1.58803 1.45418 1.14762 0.93825 0.94565 0.94315 0.93929 0.88085 0.92941 0.85537 0.92243 0.92465 0.90980 0.82357 0.82328 0.87805 0.91784 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.64 37.16 0.36 -2.42 16 2 C -0.13 -2.83 5.37 -26.73 -0.14 -2.98 16 3 C 0.22 5.11 1.85 -68.86 -0.13 4.98 16 4 H 0.01 0.19 7.25 -51.93 -0.38 -0.19 16 5 C -0.50 -13.13 8.46 -34.44 -0.29 -13.43 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.55 5.29 -17.82 -0.09 1.45 16 8 N -0.89 -24.44 11.29 55.43 0.63 -23.81 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.68 -13.64 6.02 -102.16 -0.62 -14.26 16 14 C 0.16 2.72 2.84 -68.86 -0.20 2.52 16 15 H 0.12 2.22 7.59 -51.93 -0.39 1.83 16 16 C -0.18 -2.58 9.15 37.16 0.34 -2.24 16 17 C 0.09 1.53 6.16 -35.40 -0.22 1.31 16 18 C -0.24 -3.58 10.76 -39.90 -0.43 -4.01 16 19 C -0.09 -1.36 10.62 -39.38 -0.42 -1.77 16 20 C -0.10 -1.55 7.18 -36.84 -0.26 -1.81 16 21 C 0.56 8.59 7.93 34.05 0.27 8.86 16 22 O -0.50 -8.08 16.66 -19.36 -0.32 -8.40 16 23 O -0.35 -4.85 10.58 -42.49 -0.45 -5.30 16 24 C 0.04 0.34 10.57 101.05 1.07 1.41 16 25 O -0.14 -2.39 10.66 4.78 0.05 -2.34 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.60 6.65 -51.93 -0.35 0.25 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.10 2.57 5.94 -51.93 -0.31 2.26 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.33 6.13 6.26 -39.29 -0.25 5.88 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.79 8.04 -51.93 -0.42 0.38 16 35 H 0.07 1.09 7.57 -51.93 -0.39 0.69 16 36 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 37 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 340.41 15.07 5.13 5.13 Total: -1.00 -29.11 340.41 -6.58 -35.68 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.83 Total: 5.48 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -0.15 Total: -8.13 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.01 Total: -38.07 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.72 Total: -16.03 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.11 -6.58 -35.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565783359.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.462 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds