Wall clock time and date at job start Tue Mar 31 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47154 * 2 1 4 4 N 1.30127 * 121.06759 * 270.02087 * 3 2 1 5 5 S 1.69946 * 105.76692 * 179.71602 * 4 3 2 6 6 C 1.72301 * 94.57133 * 0.34470 * 5 4 3 7 7 N 1.38326 * 127.49883 * 179.91867 * 6 5 4 8 8 C 1.46846 * 110.99750 * 123.89509 * 7 6 5 9 9 C 1.53040 * 109.51964 * 174.15840 * 8 7 6 10 10 C 1.53119 * 109.28089 * 59.17912 * 9 8 7 11 11 C 1.52993 * 109.52330 * 182.43958 * 10 9 8 12 12 C 1.50698 * 109.47494 * 294.68226 * 11 10 9 13 13 H 1.08003 * 119.99663 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00535 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99627 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00227 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47525 * 59.99461 * 16 14 12 18 18 H 1.48501 * 109.47380 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46993 * 299.99734 * 16 14 12 20 20 C 1.53124 * 109.15841 * 302.34776 * 10 9 8 21 21 C 1.46846 * 111.00105 * 359.68380 * 7 6 5 22 22 N 1.31292 * 121.06108 * 90.00051 * 3 2 1 23 23 H 1.08997 * 109.47266 * 300.00106 * 1 2 3 24 24 H 1.09006 * 109.46972 * 60.00066 * 1 2 3 25 25 H 1.09001 * 109.47266 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47012 * 240.00593 * 2 1 3 27 27 H 1.08999 * 109.47156 * 120.00565 * 2 1 3 28 28 H 1.08996 * 109.46231 * 294.17586 * 8 7 6 29 29 H 1.09004 * 109.46418 * 54.14426 * 8 7 6 30 30 H 1.09004 * 109.50602 * 299.23671 * 9 8 7 31 31 H 1.08998 * 109.50366 * 179.12192 * 9 8 7 32 32 H 1.08999 * 109.51878 * 62.24548 * 10 9 8 33 33 H 1.09007 * 109.47317 * 54.68551 * 11 10 9 34 34 H 1.09000 * 109.47026 * 174.68099 * 11 10 9 35 35 H 0.96997 * 119.99785 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.49853 * 297.70868 * 20 10 9 37 37 H 1.08996 * 109.49839 * 177.59898 * 20 10 9 38 38 H 1.09001 * 109.45990 * 305.85669 * 21 7 6 39 39 H 1.08997 * 109.46419 * 65.82350 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2558 2.0540 -1.1146 5 16 2.7947 3.6022 -0.6662 6 6 2.6953 3.2971 1.0267 7 7 3.0024 4.1659 2.0583 8 6 1.8588 4.3319 2.9645 9 6 2.2784 5.1800 4.1673 10 6 2.7675 6.5457 3.6771 11 6 3.2455 7.3759 4.8700 12 6 2.0766 7.6794 5.7714 13 1 1.0914 7.3160 5.5190 14 6 2.2648 8.4210 6.9184 15 7 3.4646 8.8631 7.2261 16 14 0.8160 8.7965 8.0361 17 1 0.2245 7.5249 8.5241 18 1 1.2796 9.6036 9.1933 19 1 -0.2082 9.5604 7.2792 20 6 3.9269 6.3423 2.6978 21 6 3.4596 5.4606 1.5376 22 7 2.2581 2.0595 1.1247 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.0456 4.8289 2.4357 29 1 1.5235 3.3537 3.3091 30 1 3.0824 4.6769 4.7047 31 1 1.4253 5.3161 4.8320 32 1 1.9523 7.0652 3.1736 33 1 3.9968 6.8147 5.4257 34 1 3.6803 8.3092 4.5122 35 1 3.5970 9.3851 8.0329 36 1 4.7568 5.8575 3.2120 37 1 4.2515 7.3089 2.3126 38 1 4.2868 5.3021 0.8457 39 1 2.6388 5.9523 1.0154 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569718700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:39 Heat of formation + Delta-G solvation = 34.483617 kcal Electronic energy + Delta-G solvation = -19617.652727 eV Core-core repulsion = 16686.119278 eV Total energy + Delta-G solvation = -2931.533449 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.57386 -39.13304 -35.18852 -33.39627 -32.35783 -31.19885 -30.83260 -28.19857 -25.73442 -24.36387 -23.36099 -22.45107 -21.09144 -19.58456 -19.33068 -18.82273 -17.08232 -16.29603 -15.80285 -14.85529 -14.81890 -14.62419 -14.27447 -14.17724 -13.78753 -13.31419 -12.90850 -12.75082 -12.40092 -12.22887 -12.05296 -11.85372 -11.41016 -11.36089 -11.30161 -11.12388 -10.94458 -10.82716 -10.62040 -10.38917 -10.23811 -9.77760 -9.73669 -9.43755 -9.23194 -9.02470 -8.48696 -8.38695 -6.03793 -4.06146 0.41151 0.98521 1.63746 2.48682 2.99258 3.30098 3.35455 3.37039 4.13537 4.42042 4.77848 4.84087 4.94850 4.99806 5.09724 5.17490 5.27333 5.33717 5.38900 5.48819 5.58247 5.60270 5.67021 5.77703 5.82943 5.92101 5.95600 6.12486 6.15595 6.40451 6.57320 6.63810 6.86292 6.92840 7.01798 7.59850 7.60808 7.74853 7.95063 8.36904 8.99874 9.58069 11.07382 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.030371 B = 0.003555 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.708493 B = 7874.107384 C = 8521.073249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.035 4.035 3 C 0.291 3.709 4 N -0.494 5.494 5 S 0.167 5.833 6 C 0.287 3.713 7 N -0.423 5.423 8 C 0.063 3.937 9 C -0.103 4.103 10 C -0.086 4.086 11 C 0.030 3.970 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.111 4.111 21 C 0.044 3.956 22 N -0.543 5.543 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.018 0.982 34 H 0.017 0.983 35 H 0.261 0.739 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.561 -12.757 -14.255 19.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C 0.001 3.999 4 N -0.326 5.326 5 S 0.305 5.695 6 C -0.092 4.092 7 N -0.143 5.143 8 C -0.063 4.063 9 C -0.141 4.141 10 C -0.105 4.105 11 C -0.007 4.007 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.717 3.283 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.149 4.149 21 C -0.083 4.083 22 N -0.272 5.272 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.980 -12.562 -15.026 19.686 hybrid contribution -1.249 0.128 1.140 1.696 sum -3.229 -12.435 -13.886 18.917 Atomic orbital electron populations 1.21709 0.93434 1.02544 1.02624 1.20188 0.96739 0.86508 1.04349 1.23387 0.94950 0.99228 0.82377 1.77482 1.26977 1.02198 1.25907 1.85063 1.63498 1.18766 1.02221 1.27246 0.92856 0.93375 0.95691 1.58016 1.33022 1.11407 1.11843 1.22555 0.87983 1.02267 0.93535 1.21687 1.02808 0.94820 0.94795 1.21341 0.95927 0.95746 0.97481 1.19095 0.96528 0.94234 0.90883 1.21184 0.94676 1.33184 1.06717 0.92678 1.25007 0.95537 0.95930 0.97873 1.69946 1.21096 1.36634 1.25721 0.86704 0.82874 0.78411 0.80293 1.20227 1.21336 1.20313 1.21751 1.00149 0.98165 0.94817 1.22656 1.00521 0.86168 0.98914 1.67364 1.24538 1.05756 1.29524 0.92014 0.92395 0.91282 0.89231 0.88782 0.93166 0.89205 0.91101 0.89461 0.92330 0.96327 0.96472 0.92933 0.90804 0.90480 0.89846 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.89 37.16 0.37 -0.84 16 2 C -0.04 -0.34 6.47 -27.88 -0.18 -0.52 16 3 C 0.29 3.88 6.82 -159.03 -1.08 2.80 16 4 N -0.49 -6.97 12.15 29.54 0.36 -6.61 16 5 S 0.17 2.19 22.17 -107.50 -2.38 -0.20 16 6 C 0.29 4.11 7.02 -86.35 -0.61 3.50 16 7 N -0.42 -6.08 4.71 -174.57 -0.82 -6.90 16 8 C 0.06 0.91 5.39 -3.83 -0.02 0.89 16 9 C -0.10 -1.74 5.15 -26.65 -0.14 -1.88 16 10 C -0.09 -1.57 2.20 -90.50 -0.20 -1.77 16 11 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 12 C -0.52 -13.72 8.45 -34.44 -0.29 -14.01 16 13 H 0.06 1.40 7.08 -52.48 -0.37 1.03 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 15 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 16 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.11 -1.66 5.38 -26.65 -0.14 -1.81 16 21 C 0.04 0.57 4.58 -3.84 -0.02 0.55 16 22 N -0.54 -8.00 10.37 -14.58 -0.15 -8.15 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 1.29 7.92 -51.93 -0.41 0.88 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.09 1.56 7.05 -51.93 -0.37 1.20 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.08 0.95 7.60 -51.93 -0.39 0.56 16 39 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 328.56 15.07 4.95 4.95 Total: -1.00 -29.61 328.56 -11.04 -40.65 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -6.17 Total: -3.38 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -2.53 Total: -11.01 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.12 Total: -46.96 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.38 Total: -0.20 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.61 -11.04 -40.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569718700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.135 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds