Wall clock time and date at job start Tue Mar 31 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47116 * 2 1 4 4 C 1.53003 * 109.46711 * 119.99917 * 2 1 3 5 5 C 1.50700 * 109.47082 * 239.99685 * 2 1 3 6 6 N 1.28438 * 120.47159 * 254.72438 * 5 2 1 7 7 C 1.34743 * 116.90019 * 179.76010 * 6 5 2 8 8 N 1.31758 * 127.89665 * 180.17226 * 7 6 5 9 9 C 1.46492 * 120.00216 * 175.20413 * 8 7 6 10 10 C 1.52999 * 109.47055 * 117.14290 * 9 8 7 11 11 C 1.50697 * 115.55293 * 39.73736 * 10 9 8 12 12 H 1.08003 * 119.99995 * 264.92040 * 11 10 9 13 13 C 1.37874 * 120.00056 * 84.90779 * 11 10 9 14 14 N 1.31522 * 119.99941 * 184.69310 * 13 11 10 15 15 Si 1.86799 * 119.99990 * 4.70132 * 13 11 10 16 16 H 1.48498 * 109.47222 * 94.49953 * 15 13 11 17 17 H 1.48504 * 109.47184 * 214.49643 * 15 13 11 18 18 H 1.48500 * 109.47164 * 334.49615 * 15 13 11 19 19 C 1.53001 * 117.50161 * 254.02487 * 10 9 8 20 20 C 1.53001 * 60.00141 * 252.51102 * 19 10 9 21 21 S 1.77477 * 104.20726 * 0.44751 * 7 6 5 22 22 N 1.33785 * 120.46962 * 75.00761 * 5 2 1 23 23 H 0.96996 * 127.11940 * 359.97438 * 22 5 2 24 24 H 1.08999 * 109.47008 * 59.99640 * 1 2 3 25 25 H 1.08991 * 109.47720 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47083 * 300.00658 * 1 2 3 27 27 H 1.09001 * 109.47081 * 60.00117 * 3 2 1 28 28 H 1.09003 * 109.47104 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47339 * 299.99313 * 3 2 1 30 30 H 1.09003 * 109.47211 * 59.99870 * 4 2 1 31 31 H 1.09003 * 109.47016 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.47052 * 299.99788 * 4 2 1 33 33 H 1.08996 * 109.47208 * 237.14876 * 9 8 7 34 34 H 1.09002 * 109.46866 * 357.14885 * 9 8 7 35 35 H 0.97004 * 119.99241 * 180.02562 * 14 13 11 36 36 H 1.09005 * 117.49965 * 0.02562 * 19 10 9 37 37 H 1.08997 * 117.49788 * 145.01739 * 19 10 9 38 38 H 1.08997 * 117.49734 * 252.50634 * 20 19 10 39 39 H 1.09001 * 117.51407 * 107.48072 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.0324 -0.7105 -1.2304 6 7 2.5244 -1.8937 -1.1440 7 6 2.9473 -2.4632 -2.2896 8 7 3.4795 -3.6576 -2.4513 9 6 3.7840 -4.1478 -3.7978 10 6 5.2922 -4.3676 -3.9315 11 6 5.9721 -4.9615 -2.7249 12 1 6.4427 -4.3161 -1.9980 13 6 5.9931 -6.3288 -2.5488 14 7 6.5045 -6.8427 -1.4515 15 14 5.2955 -7.4514 -3.8689 16 1 6.3894 -7.8960 -4.7694 17 1 4.6678 -8.6360 -3.2303 18 1 4.2747 -6.7145 -4.6565 19 6 6.0831 -3.3539 -4.7610 20 6 5.8296 -4.7596 -5.3094 21 16 2.6310 -1.2338 -3.5299 22 7 1.9772 -0.1154 -2.4274 23 1 1.6350 0.7702 -2.6256 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5140 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6765 -1.7489 1.2493 31 1 3.1300 -0.7209 1.2496 32 1 1.6766 -0.2074 2.1392 33 1 3.2630 -5.0899 -3.9680 34 1 3.4572 -3.4136 -4.5342 35 1 6.5196 -7.8047 -1.3279 36 1 5.5290 -2.5302 -5.2111 37 1 7.0953 -3.1163 -4.4338 38 1 6.6750 -5.4467 -5.3431 39 1 5.1086 -4.8612 -6.1206 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571018359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:52 Heat of formation + Delta-G solvation = 87.533586 kcal Electronic energy + Delta-G solvation = -19955.517849 eV Core-core repulsion = 17026.284819 eV Total energy + Delta-G solvation = -2929.233030 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.41821 -37.36480 -36.16843 -34.25454 -32.05431 -31.91065 -27.65737 -27.48641 -26.73979 -25.30843 -23.78973 -21.62599 -20.64198 -19.88104 -18.87168 -18.40497 -16.87364 -16.23678 -15.39354 -15.09278 -14.95828 -14.42103 -14.10094 -14.03173 -13.72253 -12.96282 -12.73165 -12.51903 -12.41747 -12.34868 -12.25099 -11.90751 -11.33586 -11.23521 -11.16539 -11.14013 -11.02752 -10.58633 -10.44709 -10.25662 -10.11328 -9.56303 -9.21089 -9.09241 -8.48181 -8.44934 -8.25933 -7.08228 -5.94210 -3.93639 0.95977 1.34074 1.95586 3.32235 3.37534 3.46858 3.49319 3.63741 4.39842 4.41076 4.55110 4.61912 4.68120 4.90918 5.00430 5.21170 5.33361 5.37878 5.41447 5.57276 5.67035 5.71464 5.77257 5.83661 5.92707 6.01298 6.06504 6.09375 6.26519 6.38320 6.47520 6.59805 6.71270 6.85870 7.04602 7.12496 7.72890 7.85889 8.42524 8.66900 9.09685 9.68718 11.18586 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.024875 B = 0.004878 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.350359 B = 5739.237086 C = 6295.080457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.005 4.005 3 C -0.145 4.145 4 C -0.130 4.130 5 C 0.399 3.601 6 N -0.511 5.511 7 C 0.325 3.675 8 N -0.405 5.405 9 C 0.088 3.912 10 C 0.005 3.995 11 C -0.462 4.462 12 H 0.075 0.925 13 C 0.079 3.921 14 N -0.898 5.898 15 Si 0.878 3.122 16 H -0.282 1.282 17 H -0.294 1.294 18 H -0.259 1.259 19 C -0.182 4.182 20 C -0.196 4.196 21 S 0.026 5.974 22 N -0.691 5.691 23 H 0.438 0.562 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.027 0.973 35 H 0.262 0.738 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.078 17.452 -0.389 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.010 4.010 3 C -0.203 4.203 4 C -0.188 4.188 5 C 0.114 3.886 6 N -0.240 5.240 7 C -0.066 4.066 8 N -0.126 5.126 9 C -0.043 4.043 10 C 0.003 3.997 11 C -0.499 4.499 12 H 0.093 0.907 13 C -0.122 4.122 14 N -0.535 5.535 15 Si 0.706 3.294 16 H -0.208 1.208 17 H -0.221 1.221 18 H -0.184 1.184 19 C -0.219 4.219 20 C -0.233 4.233 21 S 0.146 5.854 22 N -0.423 5.423 23 H 0.282 0.718 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.416 16.011 -0.489 20.267 hybrid contribution -0.741 0.424 -1.006 1.319 sum -13.157 16.435 -1.495 21.106 Atomic orbital electron populations 1.21904 0.92154 1.03263 1.02504 1.19634 0.96397 0.94727 0.90277 1.21956 1.02241 0.93505 1.02560 1.21750 1.02253 1.01153 0.93637 1.22899 0.89436 0.88007 0.88261 1.67792 1.23589 1.08243 1.24411 1.26518 0.99596 0.93597 0.86884 1.72061 1.11029 1.06489 1.22990 1.22171 0.98695 0.98678 0.84782 1.19416 0.89060 0.99418 0.91784 1.20029 1.33752 0.91672 1.04452 0.90656 1.24901 0.94357 0.97868 0.95111 1.69912 1.46046 1.11999 1.25573 0.86890 0.79895 0.80290 0.82293 1.20810 1.22106 1.18379 1.22916 1.01868 0.91412 1.05729 1.22990 1.03482 0.98658 0.98211 1.85954 1.73753 1.13456 1.12264 1.46889 1.66054 1.21460 1.07892 0.71846 0.92503 0.91469 0.90868 0.90706 0.91541 0.92632 0.90664 0.91603 0.92125 0.89362 0.95462 0.92816 0.91117 0.89429 0.89202 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.46 37.16 0.31 -0.73 16 2 C -0.01 -0.05 0.97 -155.66 -0.15 -0.20 16 3 C -0.14 -1.00 8.24 37.16 0.31 -0.69 16 4 C -0.13 -1.38 7.83 37.16 0.29 -1.09 16 5 C 0.40 5.39 6.15 -158.24 -0.97 4.42 16 6 N -0.51 -9.41 9.40 -11.65 -0.11 -9.52 16 7 C 0.33 6.70 8.61 -89.59 -0.77 5.93 16 8 N -0.41 -9.78 10.01 -61.04 -0.61 -10.39 16 9 C 0.09 2.02 6.26 -4.05 -0.03 1.99 16 10 C 0.00 0.12 1.19 -155.66 -0.19 -0.07 16 11 C -0.46 -13.56 8.75 -34.44 -0.30 -13.86 16 12 H 0.08 2.48 8.06 -52.48 -0.42 2.05 16 13 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 14 N -0.90 -28.52 13.96 55.43 0.77 -27.74 16 15 Si 0.88 22.47 25.18 -169.99 -4.28 18.19 16 16 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 18 H -0.26 -6.20 5.25 56.52 0.30 -5.91 16 19 C -0.18 -3.90 9.88 -26.73 -0.26 -4.17 16 20 C -0.20 -4.27 7.34 -26.73 -0.20 -4.47 16 21 S 0.03 0.42 22.46 -107.50 -2.41 -1.99 16 22 N -0.69 -8.20 6.47 31.49 0.20 -7.99 16 23 H 0.44 3.49 7.97 -40.82 -0.33 3.17 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.30 7.16 -51.93 -0.37 -0.07 16 30 H 0.07 0.94 7.89 -51.93 -0.41 0.53 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 2.04 6.65 -51.93 -0.35 1.70 16 34 H 0.03 0.56 6.30 -51.93 -0.33 0.23 16 35 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 36 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 37 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 38 H 0.09 2.03 7.12 -51.93 -0.37 1.66 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 326.91 15.07 4.93 4.93 Total: -1.00 -34.56 326.91 -9.60 -44.16 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.04 Total: 1.02 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -2.05 Total: -10.65 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.26 Total: -55.65 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.28 Total: 18.19 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -2.41 Total: -1.99 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.56 -9.60 -44.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571018359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.698 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds