Wall clock time and date at job start Tue Mar 31 2020 06:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46958 * 2 1 4 4 H 1.09004 * 109.47601 * 304.25347 * 3 2 1 5 5 C 1.50692 * 109.47236 * 184.24639 * 3 2 1 6 6 H 1.07996 * 120.00479 * 240.00318 * 5 3 2 7 7 C 1.37883 * 119.99879 * 60.00233 * 5 3 2 8 8 N 1.31510 * 119.99984 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47424 * 89.99794 * 9 7 5 11 11 H 1.48509 * 109.47180 * 209.99755 * 9 7 5 12 12 H 1.48500 * 109.47173 * 329.99632 * 9 7 5 13 13 N 1.46905 * 109.46998 * 64.24997 * 3 2 1 14 14 C 1.46906 * 110.99945 * 205.86919 * 13 3 2 15 15 C 1.50692 * 109.47168 * 174.79951 * 14 13 3 16 16 C 1.35179 * 125.60759 * 90.00269 * 15 14 13 17 17 C 1.40309 * 107.12656 * 179.97438 * 16 15 14 18 18 C 1.50699 * 126.64830 * 179.97438 * 17 16 15 19 19 C 1.36644 * 106.70345 * 359.97438 * 17 16 15 20 20 C 1.46466 * 125.99424 * 180.02562 * 19 17 16 21 21 O 1.21616 * 120.00318 * 0.02562 * 20 19 17 22 22 O 1.34903 * 119.99741 * 179.97438 * 20 19 17 23 23 C 1.45198 * 117.00083 * 180.02562 * 22 20 19 24 24 O 1.33914 * 125.61101 * 269.69417 * 15 14 13 25 25 H 1.09002 * 109.47443 * 54.89750 * 1 2 3 26 26 H 1.09006 * 109.47357 * 174.89988 * 1 2 3 27 27 H 1.09007 * 109.47365 * 294.90015 * 1 2 3 28 28 H 1.08999 * 109.46916 * 240.00567 * 2 1 3 29 29 H 1.09003 * 109.47027 * 120.00001 * 2 1 3 30 30 H 0.97001 * 120.00233 * 179.97438 * 8 7 5 31 31 H 1.00893 * 111.00278 * 81.91411 * 13 3 2 32 32 H 1.09006 * 109.46935 * 54.79828 * 14 13 3 33 33 H 1.08999 * 109.47174 * 294.80357 * 14 13 3 34 34 H 1.07994 * 126.43061 * 359.97384 * 16 15 14 35 35 H 1.09001 * 109.46854 * 90.02044 * 18 17 16 36 36 H 1.09004 * 109.47057 * 210.02362 * 18 17 16 37 37 H 1.09001 * 109.46851 * 330.02581 * 18 17 16 38 38 H 1.09004 * 109.46874 * 300.00463 * 23 22 20 39 39 H 1.08996 * 109.47142 * 59.99934 * 23 22 20 40 40 H 1.09001 * 109.47293 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6157 1.9779 -0.8494 5 6 3.5432 1.4439 -0.1052 6 1 4.1389 1.8918 0.6764 7 6 4.1582 0.8732 -1.1994 8 7 3.4329 0.3272 -2.1509 9 14 6.0217 0.8742 -1.3295 10 1 6.5629 -0.3550 -0.6960 11 1 6.4180 0.9094 -2.7603 12 1 6.5656 2.0692 -0.6357 13 7 1.6358 2.1047 1.2475 14 6 1.5391 3.5591 1.0641 15 6 1.0012 4.1894 2.3227 16 6 1.7450 4.6347 3.3599 17 6 0.8553 5.1449 4.3174 18 6 1.2172 5.7528 5.6480 19 6 -0.4030 4.9838 3.8096 20 6 -1.6527 5.3745 4.4659 21 8 -1.6257 5.8949 5.5648 22 8 -2.8338 5.1582 3.8509 23 6 -4.0316 5.5714 4.5600 24 8 -0.2919 4.4059 2.5952 25 1 -0.3634 0.5909 -0.8408 26 1 -0.3634 -1.0236 -0.0914 27 1 -0.3634 0.4327 0.9322 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8656 -0.0739 -2.9209 31 1 2.2685 1.8764 1.9995 32 1 0.8680 3.7766 0.2332 33 1 2.5276 3.9646 0.8484 34 1 2.8217 4.6036 3.4370 35 1 1.3628 6.8265 5.5293 36 1 0.4129 5.5717 6.3610 37 1 2.1379 5.2999 6.0159 38 1 -4.0937 5.0391 5.5092 39 1 -3.9911 6.6444 4.7472 40 1 -4.9092 5.3404 3.9561 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573502479.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:09 Heat of formation + Delta-G solvation = -80.589863 kcal Electronic energy + Delta-G solvation = -21856.090428 eV Core-core repulsion = 18444.521397 eV Total energy + Delta-G solvation = -3411.569032 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.63357 -40.22311 -36.69593 -36.40557 -34.04260 -33.10333 -31.53710 -30.10256 -28.55309 -27.43082 -26.61591 -24.83639 -22.70634 -21.98159 -21.17403 -19.82415 -19.43337 -18.21774 -17.03273 -16.82614 -16.80389 -15.79712 -15.31571 -14.84451 -14.22790 -13.94593 -13.74990 -13.47152 -13.37896 -13.11357 -13.05653 -12.73693 -12.61524 -12.36995 -12.23037 -12.10149 -11.57857 -11.25732 -11.14679 -10.98625 -10.94474 -10.73503 -10.65644 -10.24270 -9.71920 -9.66033 -9.55052 -9.17545 -8.48005 -8.45548 -7.46779 -6.08606 -4.22347 0.87382 2.30518 2.36307 2.85772 3.07942 3.22268 3.30060 3.31557 4.32417 4.62629 4.75645 4.84380 4.91307 4.99210 5.16810 5.31033 5.35403 5.50812 5.57046 5.62524 5.68352 5.81576 5.93450 6.06616 6.15835 6.25217 6.36649 6.47926 6.48334 6.67875 6.99740 7.06968 7.14404 7.31905 7.48804 7.59960 7.69009 7.94241 8.00030 8.17804 8.48342 8.88070 9.46007 10.92007 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024227 B = 0.003752 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.439831 B = 7460.760191 C = 8348.407584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.036 0.964 5 C -0.552 4.552 6 H 0.055 0.945 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.130 3.870 15 C 0.079 3.921 16 C -0.235 4.235 17 C -0.062 4.062 18 C -0.096 4.096 19 C -0.097 4.097 20 C 0.557 3.443 21 O -0.496 6.496 22 O -0.348 6.348 23 C 0.037 3.963 24 O -0.142 6.142 25 H 0.037 0.963 26 H 0.025 0.975 27 H 0.046 0.954 28 H 0.092 0.908 29 H 0.032 0.968 30 H 0.263 0.737 31 H 0.334 0.666 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.158 0.842 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.365 9.341 10.963 16.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.054 0.946 5 C -0.591 4.591 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.520 5.520 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.314 5.314 14 C 0.001 3.999 15 C 0.024 3.976 16 C -0.255 4.255 17 C -0.064 4.064 18 C -0.153 4.153 19 C -0.146 4.146 20 C 0.404 3.596 21 O -0.387 6.387 22 O -0.264 6.264 23 C -0.057 4.057 24 O -0.037 6.037 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.150 0.850 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.176 0.824 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.341 9.225 10.799 16.999 hybrid contribution 2.004 0.234 -0.043 2.018 sum -7.337 9.460 10.756 16.094 Atomic orbital electron populations 1.21706 0.98856 0.98442 1.00500 1.21501 0.92196 0.98844 1.01870 1.19221 0.92975 0.91356 0.85528 0.94594 1.21829 0.92427 1.38755 1.06085 0.92662 1.24926 0.98118 0.94786 0.95550 1.69871 1.35037 1.37586 1.09504 0.86626 0.85804 0.78456 0.77281 1.20594 1.21162 1.20017 1.60922 1.56044 1.03704 1.10697 1.20489 0.99281 0.90855 0.89278 1.23451 0.79810 0.96032 0.98266 1.21512 1.01164 1.08397 0.94422 1.20584 0.90427 0.97783 0.97627 1.20463 1.02672 1.00230 0.91918 1.20272 0.92477 1.13316 0.88575 1.19187 0.82339 0.75299 0.82797 1.90878 1.87079 1.41269 1.19426 1.86704 1.15043 1.76027 1.48652 1.23315 0.83895 1.00699 0.97750 1.84144 1.28206 1.60546 1.30756 0.94347 0.95556 0.93441 0.88957 0.94944 0.92723 0.84953 0.89560 0.91023 0.82405 0.90661 0.89837 0.91000 0.91687 0.91743 0.87821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.73 37.16 0.36 -2.44 16 2 C -0.11 -2.45 5.45 -26.73 -0.15 -2.59 16 3 C 0.22 5.05 1.98 -68.87 -0.14 4.92 16 4 H 0.04 0.92 7.70 -51.93 -0.40 0.52 16 5 C -0.55 -14.00 8.47 -34.44 -0.29 -14.30 16 6 H 0.06 1.38 7.73 -52.49 -0.41 0.97 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -23.96 11.29 55.43 0.63 -23.33 16 9 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.68 -13.56 5.72 -109.22 -0.62 -14.18 16 14 C 0.13 2.28 6.04 -4.98 -0.03 2.25 16 15 C 0.08 1.28 6.87 -35.40 -0.24 1.04 16 16 C -0.24 -3.42 10.72 -39.89 -0.43 -3.85 16 17 C -0.06 -0.89 6.20 -104.42 -0.65 -1.54 16 18 C -0.10 -1.11 9.81 36.01 0.35 -0.76 16 19 C -0.10 -1.52 7.18 -36.85 -0.26 -1.79 16 20 C 0.56 8.26 7.93 34.04 0.27 8.53 16 21 O -0.50 -7.48 14.53 -19.35 -0.28 -7.77 16 22 O -0.35 -4.71 10.58 -42.49 -0.45 -5.16 16 23 C 0.04 0.33 10.57 101.05 1.07 1.40 16 24 O -0.14 -2.43 10.67 4.72 0.05 -2.38 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.94 7.88 -51.92 -0.41 0.53 16 28 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.33 6.52 8.45 -39.30 -0.33 6.19 16 32 H 0.09 1.51 7.93 -51.93 -0.41 1.10 16 33 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 34 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.02 6.45 -51.93 -0.33 0.68 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 341.61 15.07 5.15 5.15 Total: -1.00 -28.22 341.61 -6.74 -34.97 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.96 Total: 4.87 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -0.23 Total: -7.41 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.00 Total: -37.51 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.68 Total: -15.31 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.22 -6.74 -34.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573502479.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.622 kcal (2) G-P(sol) polarization free energy of solvation -28.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds