Wall clock time and date at job start Tue Mar 31 2020 05:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47322 * 2 1 4 4 C 1.35930 * 119.71538 * 124.99465 * 3 2 1 5 5 C 1.41641 * 118.84882 * 180.02562 * 4 3 2 6 6 N 1.31554 * 120.86292 * 180.02562 * 5 4 3 7 7 N 1.38226 * 118.27599 * 0.02562 * 5 4 3 8 8 H 0.97003 * 120.36650 * 179.97438 * 7 5 4 9 9 C 1.36495 * 119.26785 * 0.02562 * 7 5 4 10 10 S 1.76202 * 119.43162 * 179.72084 * 9 7 5 11 11 C 1.81002 * 99.99876 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47232 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47169 * 300.00084 * 12 11 10 14 14 C 1.52998 * 109.47050 * 59.99923 * 12 11 10 15 15 C 1.50700 * 109.47112 * 179.97438 * 12 11 10 16 16 H 1.08000 * 119.99828 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99825 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00070 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 119.99759 * 180.02562 * 17 15 12 20 20 H 1.48507 * 109.47462 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47115 * 120.00143 * 19 17 15 22 22 H 1.48496 * 109.47151 * 240.00310 * 19 17 15 23 23 N 1.31671 * 121.13130 * 359.97438 * 9 7 5 24 24 H 1.09003 * 109.46216 * 60.00331 * 1 2 3 25 25 H 1.08995 * 109.47280 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47439 * 300.00623 * 1 2 3 27 27 H 1.08993 * 109.47439 * 239.99377 * 2 1 3 28 28 H 1.09008 * 109.46908 * 119.99593 * 2 1 3 29 29 H 1.08002 * 120.57341 * 0.04361 * 4 3 2 30 30 H 0.97000 * 120.00308 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.46934 * 300.00244 * 11 10 9 32 32 H 1.09000 * 109.47056 * 59.99646 * 11 10 9 33 33 H 1.08999 * 109.47305 * 59.99910 * 13 12 11 34 34 H 1.09001 * 109.47048 * 180.02562 * 13 12 11 35 35 H 1.09000 * 109.46854 * 300.00094 * 13 12 11 36 36 H 1.09004 * 109.46786 * 60.00319 * 14 12 11 37 37 H 1.09001 * 109.46981 * 179.97438 * 14 12 11 38 38 H 1.08999 * 109.47581 * 300.00183 * 14 12 11 39 39 H 0.96996 * 119.99830 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8953 1.8303 0.9671 5 6 3.3554 3.1698 0.9499 6 7 4.1914 3.6080 1.8662 7 7 2.9033 4.0046 -0.0547 8 1 3.1985 4.9277 -0.0953 9 6 2.0358 3.5160 -0.9885 10 16 1.4509 4.5784 -2.2667 11 6 0.3804 3.4286 -3.1657 12 6 -0.2576 4.1495 -4.3549 13 6 -1.0884 5.3307 -3.8493 14 6 0.8402 4.6612 -5.2897 15 6 -1.1484 3.1920 -5.1037 16 1 -1.2491 2.1713 -4.7655 17 6 -1.8348 3.6192 -6.2206 18 7 -1.7118 4.8620 -6.6327 19 14 -2.9396 2.4325 -7.1484 20 1 -2.9060 1.1039 -6.4858 21 1 -4.3316 2.9497 -7.1490 22 1 -2.4599 2.3006 -8.5475 23 7 1.6248 2.2657 -0.9476 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8898 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 3.2246 1.1461 1.7351 30 1 4.4988 4.5277 1.8423 31 1 0.9722 2.5869 -3.5255 32 1 -0.4019 3.0644 -2.4998 33 1 -0.4438 6.0231 -3.3080 34 1 -1.5433 5.8440 -4.6965 35 1 -1.8704 4.9661 -3.1833 36 1 1.4320 3.8197 -5.6499 37 1 0.3857 5.1744 -6.1372 38 1 1.4849 5.3536 -4.7484 39 1 -2.1945 5.1623 -7.4186 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574100428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:34 Heat of formation + Delta-G solvation = 37.187294 kcal Electronic energy + Delta-G solvation = -19794.495076 eV Core-core repulsion = 16863.078867 eV Total energy + Delta-G solvation = -2931.416209 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.69596 -36.21234 -35.95086 -34.10225 -31.76660 -31.54034 -29.56268 -26.48085 -25.81231 -25.23068 -24.86886 -24.01914 -21.31596 -19.31703 -18.55759 -18.11926 -17.06908 -16.08688 -15.46191 -15.14251 -14.81803 -14.41047 -14.13166 -13.86383 -13.38084 -13.21507 -12.82886 -12.43774 -12.24632 -11.78454 -11.45842 -11.40999 -11.39879 -11.13940 -10.91927 -10.80650 -10.43342 -10.40946 -10.33508 -10.13901 -10.05127 -9.69177 -9.56781 -9.51566 -8.79817 -8.49073 -8.11363 -7.30072 -6.09132 -4.20139 0.72826 1.25567 1.93539 2.51590 3.07649 3.22838 3.32082 3.35833 3.62809 4.29863 4.34170 4.55950 5.14633 5.17908 5.26121 5.34369 5.38692 5.67057 5.83489 5.92454 5.94723 5.98522 6.00973 6.20410 6.33278 6.43656 6.47197 6.70399 6.78238 6.88969 6.91714 6.96986 7.24281 7.46332 7.63151 7.88164 7.91543 8.04095 8.26305 8.28191 8.79573 9.45958 10.92201 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.022415 B = 0.004740 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.864711 B = 5906.107406 C = 6906.389413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C 0.183 3.817 4 C -0.243 4.243 5 C 0.437 3.563 6 N -0.774 5.774 7 N -0.651 5.651 8 H 0.413 0.587 9 C 0.372 3.628 10 S -0.026 6.026 11 C -0.059 4.059 12 C 0.077 3.923 13 C -0.136 4.136 14 C -0.136 4.136 15 C -0.503 4.503 16 H 0.060 0.940 17 C 0.068 3.932 18 N -0.884 5.884 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.549 5.549 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.147 0.853 30 H 0.326 0.674 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.014 0.986 34 H 0.088 0.912 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.088 0.912 38 H 0.014 0.986 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.634 -3.070 9.588 11.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C 0.058 3.942 4 C -0.273 4.273 5 C 0.167 3.833 6 N -0.408 5.408 7 N -0.282 5.282 8 H 0.250 0.750 9 C -0.001 4.001 10 S 0.211 5.789 11 C -0.207 4.207 12 C 0.074 3.926 13 C -0.194 4.194 14 C -0.194 4.194 15 C -0.543 4.543 16 H 0.078 0.922 17 C -0.134 4.134 18 N -0.522 5.522 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.277 5.277 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.164 0.836 30 H 0.141 0.859 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.033 0.967 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.107 0.893 38 H 0.033 0.967 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.724 -2.700 9.549 11.456 hybrid contribution -0.223 -0.325 -0.197 0.440 sum 5.501 -3.025 9.353 11.264 Atomic orbital electron populations 1.21657 0.93771 1.01741 1.03019 1.20493 0.97287 0.89952 1.03170 1.20829 0.89654 0.95540 0.88156 1.21061 1.07156 0.93699 1.05341 1.20356 0.89133 0.91038 0.82794 1.70725 1.21752 1.22119 1.26224 1.44797 1.42301 1.15267 1.25868 0.74951 1.25970 0.87231 0.94750 0.92112 1.86181 1.54557 1.15825 1.22332 1.24212 0.98382 0.98312 0.99770 1.18139 0.92759 0.93334 0.88324 1.21931 0.98730 0.97977 1.00766 1.21933 0.96766 0.98879 1.01837 1.20996 1.26088 0.96612 1.10619 0.92193 1.24879 0.96444 0.95193 0.96908 1.69807 1.42290 1.15333 1.24812 0.86499 0.80345 0.81261 0.79692 1.19703 1.21018 1.21014 1.68636 1.30776 1.00313 1.28017 0.91021 0.92345 0.93025 0.89657 0.90260 0.83565 0.85896 0.89373 0.89374 0.96665 0.89344 0.95122 0.95120 0.89347 0.96665 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.77 37.16 0.36 -1.27 16 2 C -0.07 -0.79 6.33 -27.88 -0.18 -0.96 16 3 C 0.18 2.55 6.15 -82.77 -0.51 2.04 16 4 C -0.24 -3.39 9.66 -39.11 -0.38 -3.77 16 5 C 0.44 6.33 7.84 -155.52 -1.22 5.12 16 6 N -0.77 -11.36 14.11 31.36 0.44 -10.92 16 7 N -0.65 -8.69 5.47 -11.84 -0.06 -8.75 16 8 H 0.41 4.48 8.81 -40.82 -0.36 4.12 16 9 C 0.37 5.63 7.97 -88.05 -0.70 4.92 16 10 S -0.03 -0.41 19.25 -107.50 -2.07 -2.48 16 11 C -0.06 -1.10 3.76 37.16 0.14 -0.96 16 12 C 0.08 1.68 0.52 -155.66 -0.08 1.60 16 13 C -0.14 -2.97 8.01 37.16 0.30 -2.67 16 14 C -0.14 -2.97 8.01 37.16 0.30 -2.67 16 15 C -0.50 -12.42 8.01 -34.44 -0.28 -12.70 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 18 N -0.88 -22.78 9.35 55.43 0.52 -22.26 16 19 Si 0.89 19.89 29.54 -169.99 -5.02 14.87 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 N -0.55 -8.62 8.63 -9.37 -0.08 -8.70 16 24 H 0.07 0.96 7.95 -51.93 -0.41 0.54 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 0.71 7.85 -51.92 -0.41 0.30 16 29 H 0.15 1.82 7.93 -52.49 -0.42 1.41 16 30 H 0.33 4.14 8.89 -40.82 -0.36 3.78 16 31 H 0.09 1.70 8.12 -51.91 -0.42 1.27 16 32 H 0.09 1.69 8.11 -51.92 -0.42 1.27 16 33 H 0.01 0.29 6.91 -51.93 -0.36 -0.07 16 34 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 38 H 0.01 0.29 6.91 -51.93 -0.36 -0.07 16 39 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 329.25 15.07 4.96 4.96 Total: -1.00 -26.37 329.25 -9.45 -35.82 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.81 Total: 7.16 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -2.33 Total: -9.70 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.82 Total: -50.63 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -2.07 Total: -2.48 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.37 -9.45 -35.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574100428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.011 kcal (2) G-P(sol) polarization free energy of solvation -26.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds