Wall clock time and date at job start Tue Mar 31 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31776 * 122.74838 * 2 1 4 4 C 1.29027 * 117.12568 * 180.02562 * 3 2 1 5 5 S 1.70977 * 110.16578 * 359.97438 * 4 3 2 6 6 C 1.33635 * 122.74873 * 179.97438 * 2 1 3 7 7 C 1.50699 * 126.03805 * 359.96589 * 6 2 1 8 8 N 1.46906 * 109.46901 * 90.02014 * 7 6 2 9 9 C 1.46952 * 110.99924 * 293.79546 * 8 7 6 10 10 C 1.53044 * 109.36655 * 176.81678 * 9 8 7 11 11 N 1.46954 * 109.36804 * 58.40111 * 10 9 8 12 12 C 1.46897 * 111.00234 * 176.81667 * 11 10 9 13 13 C 1.50698 * 109.46835 * 293.79766 * 12 11 10 14 14 H 1.08001 * 120.00505 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00265 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99531 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00486 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47459 * 89.99635 * 17 15 13 19 19 H 1.48502 * 109.47275 * 210.00041 * 17 15 13 20 20 H 1.48505 * 109.46897 * 329.99725 * 17 15 13 21 21 C 1.46959 * 110.88027 * 300.68171 * 11 10 9 22 22 C 1.46962 * 110.99694 * 169.99765 * 8 7 6 23 23 H 1.09001 * 109.47671 * 270.00063 * 1 2 3 24 24 H 1.09003 * 109.47133 * 30.00257 * 1 2 3 25 25 H 1.08999 * 109.47079 * 150.00052 * 1 2 3 26 26 H 1.07998 * 124.92077 * 180.02562 * 4 3 2 27 27 H 1.09004 * 109.47049 * 210.01560 * 7 6 2 28 28 H 1.08991 * 109.47647 * 330.01681 * 7 6 2 29 29 H 1.09006 * 109.48995 * 296.78668 * 9 8 7 30 30 H 1.09004 * 109.48924 * 56.84546 * 9 8 7 31 31 H 1.09002 * 109.48646 * 298.43585 * 10 9 8 32 32 H 1.09002 * 109.49308 * 178.37435 * 10 9 8 33 33 H 1.09000 * 109.47506 * 53.79674 * 12 11 10 34 34 H 1.09003 * 109.47045 * 173.79940 * 12 11 10 35 35 H 0.96998 * 120.00222 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.48896 * 299.35517 * 21 11 10 37 37 H 1.08996 * 109.48958 * 179.28671 * 21 11 10 38 38 H 1.08990 * 109.49094 * 303.15407 * 22 8 7 39 39 H 1.09002 * 109.48729 * 63.22013 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2198 1.1083 0.0000 4 6 3.5039 0.9819 -0.0005 5 16 3.9332 -0.6731 -0.0004 6 6 2.2299 -1.1239 0.0005 7 6 1.6846 -2.5288 0.0019 8 7 1.5072 -2.9865 -1.3828 9 6 0.4622 -2.2100 -2.0643 10 6 0.3635 -2.6626 -3.5229 11 7 0.0611 -4.1000 -3.5678 12 6 -0.1163 -4.5577 -4.9524 13 6 -1.3477 -3.9172 -5.5392 14 1 -1.9392 -3.2377 -4.9434 15 6 -1.7194 -4.1986 -6.8368 16 7 -0.9990 -5.0256 -7.5625 17 14 -3.2454 -3.4041 -7.5645 18 1 -2.8742 -2.1204 -8.2122 19 1 -3.8431 -4.3137 -8.5748 20 1 -4.2321 -3.1467 -6.4849 21 6 1.1062 -4.8766 -2.8863 22 6 1.2049 -4.4240 -1.4276 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 4.2059 1.8026 -0.0002 27 1 2.3830 -3.1891 0.5161 28 1 0.7236 -2.5451 0.5159 29 1 -0.4943 -2.3729 -1.5674 30 1 0.7149 -1.1503 -2.0286 31 1 1.3115 -2.4745 -4.0269 32 1 -0.4307 -2.1081 -4.0229 33 1 0.7559 -4.2765 -5.5426 34 1 -0.2295 -5.6418 -4.9650 35 1 -1.2602 -5.2233 -8.4755 36 1 2.0626 -4.7136 -3.3831 37 1 0.8534 -5.9362 -2.9220 38 1 1.9991 -4.9784 -0.9277 39 1 0.2568 -4.6121 -0.9236 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589257525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:57 Heat of formation + Delta-G solvation = 60.650642 kcal Electronic energy + Delta-G solvation = -20066.989835 eV Core-core repulsion = 17136.591074 eV Total energy + Delta-G solvation = -2930.398762 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.17957 -38.64176 -35.42652 -32.80604 -31.94524 -30.39999 -29.64533 -27.40793 -25.54282 -24.74876 -23.41043 -22.78423 -21.37483 -19.26265 -18.88627 -18.11011 -16.32294 -16.17292 -15.81888 -14.90147 -14.76507 -14.45119 -14.24892 -14.04397 -13.64021 -13.51830 -13.24077 -12.75240 -12.64674 -12.50144 -12.16632 -11.93312 -11.63692 -11.27967 -11.11359 -10.83763 -10.75099 -10.66399 -10.40859 -10.28832 -9.76538 -9.69763 -9.35793 -9.17494 -8.83602 -8.44022 -8.19001 -7.24066 -6.02572 -4.04028 0.60889 1.29754 1.68908 2.68005 3.31934 3.38134 3.42183 4.06502 4.14889 4.42496 4.72823 4.89475 4.95180 5.04666 5.23398 5.33162 5.36110 5.45776 5.49283 5.52728 5.62362 5.73808 5.78125 5.83017 5.90477 6.04253 6.16025 6.21067 6.40866 6.56664 6.67814 7.11028 7.13354 7.33388 7.36648 7.63114 7.79773 8.08505 8.19985 8.54803 9.03386 9.60266 11.08364 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.024907 B = 0.004007 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.895410 B = 6986.561337 C = 7500.443722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.062 3.938 3 N -0.468 5.468 4 C 0.009 3.991 5 S 0.133 5.867 6 C -0.203 4.203 7 C 0.130 3.870 8 N -0.535 5.535 9 C 0.053 3.947 10 C 0.068 3.932 11 N -0.538 5.538 12 C 0.193 3.807 13 C -0.507 4.507 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.057 3.943 22 C 0.062 3.938 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.196 0.804 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.028 0.972 32 H 0.086 0.914 33 H -0.009 1.009 34 H 0.030 0.970 35 H 0.261 0.739 36 H 0.031 0.969 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.697 7.290 17.508 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.071 4.071 3 N -0.182 5.182 4 C -0.289 4.289 5 S 0.387 5.613 6 C -0.324 4.324 7 C 0.000 4.000 8 N -0.260 5.260 9 C -0.074 4.074 10 C -0.061 4.061 11 N -0.263 5.263 12 C 0.068 3.932 13 C -0.546 4.546 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.073 4.073 22 C -0.066 4.066 23 H 0.091 0.909 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.213 0.787 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.009 0.991 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.458 7.221 17.317 21.012 hybrid contribution -1.457 0.516 -0.604 1.659 sum 8.001 7.738 16.713 20.081 Atomic orbital electron populations 1.20704 0.87229 1.04426 1.02935 1.20223 0.98203 0.86196 1.02452 1.66172 1.05082 1.31655 1.15274 1.28243 0.95296 1.00233 1.05091 1.83965 1.07206 1.03048 1.67073 1.25592 0.95056 1.00246 1.11537 1.20364 0.99583 0.89006 0.91014 1.62193 1.46402 1.04229 1.13220 1.22511 0.91904 0.97307 0.95716 1.21990 0.99958 0.90784 0.93359 1.62299 1.41436 1.02075 1.20496 1.19701 0.96098 0.96217 0.81139 1.21148 1.09615 1.26815 0.97018 0.91941 1.24985 0.97144 0.95366 0.97069 1.69958 1.39097 1.35400 1.09358 0.86514 0.83078 0.79042 0.78891 1.20731 1.21252 1.19777 1.22060 0.94307 0.98155 0.92733 1.22180 0.99375 0.87034 0.98006 0.90931 0.90433 0.89586 0.78683 0.89750 0.92572 0.93956 0.90705 0.95399 0.89526 0.99085 0.95200 0.92928 0.95112 0.90865 0.91058 0.94022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 9.15 36.00 0.33 -0.71 16 2 C 0.06 0.79 5.88 -84.23 -0.50 0.29 16 3 N -0.47 -6.10 10.53 -11.90 -0.13 -6.23 16 4 C 0.01 0.10 12.23 51.58 0.63 0.73 16 5 S 0.13 1.37 23.22 -107.50 -2.50 -1.12 16 6 C -0.20 -2.45 5.51 -35.92 -0.20 -2.64 16 7 C 0.13 1.52 5.15 -4.97 -0.03 1.49 16 8 N -0.54 -7.72 4.70 -235.91 -1.11 -8.83 16 9 C 0.05 0.84 3.99 -3.77 -0.02 0.83 16 10 C 0.07 1.35 5.43 -3.77 -0.02 1.33 16 11 N -0.54 -11.60 4.70 -235.91 -1.11 -12.71 16 12 C 0.19 5.07 4.72 -4.98 -0.02 5.04 16 13 C -0.51 -14.23 8.47 -34.44 -0.29 -14.52 16 14 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 17 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.06 1.02 5.61 -3.76 -0.02 1.00 16 22 C 0.06 0.89 5.61 -3.76 -0.02 0.87 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.09 0.98 4.00 -51.93 -0.21 0.77 16 26 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 27 H 0.08 0.86 8.03 -51.93 -0.42 0.44 16 28 H 0.06 0.62 7.41 -51.93 -0.38 0.23 16 29 H 0.04 0.66 7.11 -51.93 -0.37 0.30 16 30 H 0.07 1.15 5.35 -51.93 -0.28 0.87 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.84 6.79 -51.93 -0.35 1.48 16 33 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 34 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 38 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 319.67 15.07 4.82 4.82 Total: -1.00 -31.21 319.67 -10.29 -41.50 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -5.73 Total: -3.17 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -0.25 Total: -4.83 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -1.61 Total: -53.81 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.50 Total: -1.12 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.21 -10.29 -41.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589257525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.150 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds