Wall clock time and date at job start Tue Mar 31 2020 06:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47176 * 2 1 4 4 H 1.08997 * 109.47382 * 305.68410 * 3 2 1 5 5 C 1.50705 * 109.47264 * 185.68683 * 3 2 1 6 6 H 1.08000 * 119.99475 * 266.11760 * 5 3 2 7 7 C 1.37871 * 120.00172 * 86.39199 * 5 3 2 8 8 N 1.31512 * 119.99991 * 185.65249 * 7 5 3 9 9 Si 1.86802 * 119.99967 * 5.65531 * 7 5 3 10 10 H 1.48495 * 109.47298 * 84.61778 * 9 7 5 11 11 H 1.48502 * 109.46725 * 204.62236 * 9 7 5 12 12 H 1.48503 * 109.46968 * 324.61454 * 9 7 5 13 13 N 1.46503 * 109.47164 * 65.68739 * 3 2 1 14 14 C 1.34783 * 119.99579 * 274.99957 * 13 3 2 15 15 O 1.21272 * 120.00056 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99663 * 179.97438 * 14 13 3 17 17 C 1.54888 * 129.09193 * 299.94129 * 16 14 13 18 18 C 1.57169 * 77.91585 * 180.16175 * 17 16 14 19 19 C 1.50703 * 129.25085 * 179.19316 * 18 17 16 20 20 O 1.20822 * 120.00091 * 241.28522 * 19 18 17 21 21 O 1.34232 * 119.99955 * 61.28561 * 19 18 17 22 22 C 1.45200 * 116.99845 * 180.02562 * 21 19 18 23 23 C 1.54408 * 83.72966 * 42.47463 * 18 17 16 24 24 C 1.54884 * 83.77513 * 317.35528 * 18 17 16 25 25 H 1.09002 * 109.47003 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46728 * 299.99894 * 1 2 3 27 27 H 1.09000 * 109.46802 * 60.00032 * 1 2 3 28 28 H 1.09003 * 109.47183 * 240.00159 * 2 1 3 29 29 H 1.08996 * 109.47311 * 120.00513 * 2 1 3 30 30 H 0.97001 * 120.00153 * 180.02562 * 8 7 5 31 31 H 0.96994 * 119.99919 * 94.99518 * 13 3 2 32 32 H 1.09000 * 114.97863 * 291.95798 * 17 16 14 33 33 H 1.09004 * 114.97654 * 67.13069 * 17 16 14 34 34 H 1.08995 * 109.47335 * 60.00253 * 22 21 19 35 35 H 1.09003 * 109.47100 * 180.02562 * 22 21 19 36 36 H 1.08998 * 109.47292 * 299.99660 * 22 21 19 37 37 H 1.09001 * 114.93541 * 205.05764 * 23 18 17 38 38 H 1.08995 * 114.93501 * 70.03441 * 23 18 17 39 39 H 1.08999 * 116.12202 * 290.11993 * 24 18 17 40 40 H 1.08999 * 113.83680 * 154.95873 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5960 1.9848 -0.8347 5 6 3.5405 1.4448 -0.1408 6 1 4.1653 1.4781 0.7395 7 6 4.1154 1.4101 -1.3934 8 7 5.4202 1.3000 -1.5152 9 14 3.0410 1.5197 -2.9176 10 1 2.7683 2.9457 -3.2295 11 1 3.7422 0.8875 -4.0639 12 1 1.7585 0.8128 -2.6710 13 7 1.6667 2.0924 1.2587 14 6 0.4507 2.6589 1.3898 15 8 -0.3341 2.6309 0.4657 16 6 0.0664 3.3270 2.6848 17 6 -0.0285 2.7197 4.1065 18 6 -0.4410 4.2151 4.3593 19 6 -0.8456 4.8883 5.6454 20 8 -1.9450 5.3781 5.7511 21 8 0.0155 4.9437 6.6737 22 6 -0.4422 5.6069 7.8816 23 6 -1.2547 4.0331 3.0597 24 6 0.7366 4.5252 3.4021 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.8248 1.2760 -2.3965 31 1 2.2945 2.1151 1.9977 32 1 -0.8319 1.9963 4.2454 33 1 0.9229 2.4104 4.5393 34 1 -1.3242 5.0945 8.2656 35 1 0.3484 5.5818 8.6317 36 1 -0.6939 6.6428 7.6543 37 1 -1.4558 4.9530 2.5108 38 1 -2.1188 3.3746 3.1470 39 1 1.7357 4.3286 3.7909 40 1 0.6446 5.4807 2.8857 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592789784.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:46 Heat of formation + Delta-G solvation = -26.498282 kcal Electronic energy + Delta-G solvation = -22291.928973 eV Core-core repulsion = 18882.705528 eV Total energy + Delta-G solvation = -3409.223445 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -42.36740 -40.24182 -38.64476 -36.67556 -35.19511 -32.38069 -31.48397 -28.73886 -27.74896 -26.04002 -25.96967 -25.84741 -23.32686 -22.45497 -20.33336 -19.64840 -18.81537 -17.71643 -17.38647 -16.63801 -16.60160 -15.60678 -15.37785 -14.82115 -14.46381 -14.37560 -14.21750 -13.70188 -13.55725 -13.00470 -12.77269 -12.55478 -12.36247 -11.95922 -11.87180 -11.65665 -11.45301 -11.37939 -11.10245 -10.96429 -10.87232 -10.74279 -10.70995 -10.49930 -10.43218 -9.95848 -9.87286 -9.28290 -9.18311 -8.71588 -8.09398 -6.25143 -4.28348 1.78638 2.30746 2.93433 3.25315 3.33344 3.40300 3.74958 3.87481 4.08898 4.12853 4.31006 4.31624 4.53690 4.63808 4.80210 4.87848 5.08574 5.19929 5.32842 5.38826 5.42989 5.61736 5.70021 5.76431 5.78011 5.94844 6.03547 6.06090 6.06728 6.22790 6.62322 6.75932 6.92778 6.98362 7.26089 7.31189 7.48659 7.49923 8.10415 8.50979 8.73767 8.90373 9.36568 10.86559 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029424 B = 0.003890 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.367885 B = 7195.595944 C = 7571.235603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.240 3.760 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.079 0.921 7 C 0.082 3.918 8 N -0.889 5.889 9 Si 0.869 3.131 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.256 1.256 13 N -0.692 5.692 14 C 0.562 3.438 15 O -0.541 6.541 16 C -0.149 4.149 17 C -0.076 4.076 18 C -0.158 4.158 19 C 0.529 3.471 20 O -0.499 6.499 21 O -0.351 6.351 22 C 0.035 3.965 23 C -0.061 4.061 24 C -0.076 4.076 25 H 0.031 0.969 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.268 0.732 31 H 0.395 0.605 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.368 5.125 15.271 18.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.138 3.862 4 H 0.067 0.933 5 C -0.571 4.571 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.525 5.525 9 Si 0.696 3.304 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.181 1.181 13 N -0.340 5.340 14 C 0.346 3.654 15 O -0.419 6.419 16 C -0.152 4.152 17 C -0.114 4.114 18 C -0.159 4.159 19 C 0.372 3.628 20 O -0.386 6.386 21 O -0.267 6.267 22 C -0.059 4.059 23 C -0.099 4.099 24 C -0.113 4.113 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.228 0.772 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.068 5.229 14.507 18.416 hybrid contribution -0.220 0.245 -0.251 0.414 sum -10.287 5.474 14.255 18.412 Atomic orbital electron populations 1.21913 0.97432 0.98938 1.02010 1.22134 0.93667 0.99457 1.01387 1.19160 0.95655 0.89007 0.82405 0.93306 1.20990 0.88522 1.52905 0.94681 0.90280 1.24871 0.94854 0.93637 0.98859 1.69879 1.09779 1.48507 1.24330 0.86983 0.81472 0.79320 0.82644 1.19878 1.21201 1.18056 1.46349 1.14063 1.55332 1.18226 1.18361 0.82757 0.78616 0.85683 1.90686 1.51156 1.59796 1.40279 1.23918 0.99140 0.98036 0.94149 1.24511 1.02458 0.92005 0.92421 1.23762 1.01579 0.99614 0.90966 1.21424 0.82162 0.76013 0.83227 1.90677 1.22205 1.43515 1.82214 1.86510 1.45208 1.71585 1.23409 1.23318 1.01513 0.97308 0.83714 1.23655 0.95622 1.00489 0.90113 1.24046 0.96465 0.97872 0.92958 0.95036 0.93178 0.93093 0.92004 0.92848 0.92232 0.77169 0.89563 0.88813 0.91779 0.87826 0.91768 0.89583 0.89591 0.88691 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.53 37.16 0.32 -2.51 16 2 C -0.13 -2.68 5.26 -26.73 -0.14 -2.82 16 3 C 0.24 5.44 1.79 -69.08 -0.12 5.32 16 4 H 0.05 1.22 5.24 -51.93 -0.27 0.95 16 5 C -0.53 -13.82 9.06 -34.44 -0.31 -14.14 16 6 H 0.08 2.16 8.02 -52.49 -0.42 1.73 16 7 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 8 N -0.89 -25.66 13.96 55.43 0.77 -24.89 16 9 Si 0.87 20.99 26.27 -169.99 -4.47 16.52 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.26 -6.03 6.30 56.52 0.36 -5.67 16 13 N -0.69 -13.03 5.03 -54.93 -0.28 -13.30 16 14 C 0.56 10.13 6.54 -10.98 -0.07 10.06 16 15 O -0.54 -11.59 14.24 5.56 0.08 -11.51 16 16 C -0.15 -2.02 3.36 -172.27 -0.58 -2.60 16 17 C -0.08 -0.83 7.95 -24.72 -0.20 -1.03 16 18 C -0.16 -1.81 3.61 -171.01 -0.62 -2.43 16 19 C 0.53 6.41 8.07 36.01 0.29 6.70 16 20 O -0.50 -7.19 16.84 -18.75 -0.32 -7.51 16 21 O -0.35 -3.67 10.57 -39.26 -0.41 -4.08 16 22 C 0.04 0.25 10.56 101.05 1.07 1.32 16 23 C -0.06 -0.77 7.77 -26.72 -0.21 -0.98 16 24 C -0.08 -0.86 7.84 -25.99 -0.20 -1.07 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.96 5.63 -51.93 -0.29 0.66 16 27 H 0.05 1.06 7.89 -51.93 -0.41 0.65 16 28 H 0.06 1.36 7.00 -51.93 -0.36 1.00 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.39 6.52 8.57 -40.82 -0.35 6.17 16 32 H 0.09 0.89 7.91 -51.93 -0.41 0.47 16 33 H 0.09 0.88 7.97 -51.93 -0.41 0.47 16 34 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 35 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 37 H 0.09 1.08 7.94 -51.93 -0.41 0.67 16 38 H 0.09 1.05 7.91 -51.93 -0.41 0.64 16 39 H 0.09 0.95 7.97 -51.93 -0.41 0.54 16 40 H 0.09 0.95 7.93 -51.93 -0.41 0.54 16 LS Contribution 332.19 15.07 5.01 5.01 Total: -1.00 -31.49 332.19 -6.36 -37.86 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.87 Total: 3.94 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -0.87 Total: -2.03 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.50 Total: -38.19 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.65 Total: -23.10 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.47 Total: 16.52 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.49 -6.36 -37.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592789784.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.358 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds