Wall clock time and date at job start Tue Mar 31 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35375 * 116.99967 * 2 1 4 4 C 1.36091 * 125.57729 * 179.97438 * 3 2 1 5 5 C 1.39915 * 107.17301 * 179.97438 * 4 3 2 6 6 C 1.37829 * 106.67722 * 359.97438 * 5 4 3 7 7 C 1.46131 * 126.02948 * 179.97438 * 6 5 4 8 8 O 1.21771 * 119.99812 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99856 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99921 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47109 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47459 * 300.00083 * 11 10 9 13 13 C 1.53004 * 109.47256 * 59.99961 * 11 10 9 14 14 C 1.52994 * 109.47377 * 179.97438 * 11 10 9 15 15 C 1.50697 * 109.47506 * 179.97438 * 14 11 10 16 16 H 1.08004 * 119.99966 * 0.02562 * 15 14 11 17 17 C 1.37881 * 120.00224 * 180.02562 * 15 14 11 18 18 N 1.31515 * 120.00160 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99793 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47110 * 90.00157 * 19 17 15 21 21 H 1.48500 * 109.46893 * 209.99996 * 19 17 15 22 22 H 1.48504 * 109.47165 * 330.00062 * 19 17 15 23 23 O 1.34009 * 125.57426 * 359.97438 * 3 2 1 24 24 H 1.09000 * 109.47556 * 300.00047 * 1 2 3 25 25 H 1.09002 * 109.47313 * 60.00707 * 1 2 3 26 26 H 1.09009 * 109.47067 * 180.02562 * 1 2 3 27 27 H 1.08004 * 126.41459 * 0.23896 * 4 3 2 28 28 H 1.07996 * 126.65689 * 180.02562 * 5 4 3 29 29 H 0.97001 * 120.00221 * 0.02562 * 9 7 6 30 30 H 1.09001 * 109.46699 * 300.00276 * 10 9 7 31 31 H 1.09000 * 109.46992 * 60.00317 * 10 9 7 32 32 H 1.09005 * 109.46766 * 59.99635 * 12 11 10 33 33 H 1.08992 * 109.47754 * 180.02562 * 12 11 10 34 34 H 1.09000 * 109.46839 * 300.00258 * 12 11 10 35 35 H 1.09005 * 109.47029 * 59.99988 * 13 11 10 36 36 H 1.09002 * 109.47369 * 179.97438 * 13 11 10 37 37 H 1.09001 * 109.47286 * 299.99955 * 13 11 10 38 38 H 1.08997 * 109.47288 * 300.00425 * 14 11 10 39 39 H 1.09005 * 109.47161 * 59.99694 * 14 11 10 40 40 H 0.96993 * 120.00157 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3892 1.4092 0.0005 5 6 3.5983 2.7926 -0.0003 6 6 2.3520 3.3810 -0.0019 7 6 2.0792 4.8167 -0.0026 8 8 3.0016 5.6116 -0.0023 9 7 0.8068 5.2608 -0.0046 10 6 0.5333 6.7001 -0.0060 11 6 -0.9790 6.9319 -0.0076 12 6 -1.5912 6.2953 -1.2569 13 6 -1.5936 6.2971 1.2416 14 6 -1.2646 8.4349 -0.0083 15 6 -2.7542 8.6633 -0.0105 16 1 -3.4297 7.8205 -0.0109 17 6 -3.2547 9.9480 -0.0120 18 7 -4.5547 10.1473 -0.0145 19 14 -2.0864 11.4056 -0.0106 20 1 -1.7743 11.7911 -1.4103 21 1 -2.7242 12.5504 0.6877 22 1 -0.8320 11.0338 0.6919 23 8 1.4263 2.3957 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 4.1528 0.6454 -0.0027 28 1 4.5513 3.3007 -0.0006 29 1 0.0720 4.6276 -0.0053 30 1 0.9692 7.1535 0.8843 31 1 0.9715 7.1524 -0.8957 32 1 -1.3877 5.2245 -1.2559 33 1 -2.6685 6.4608 -1.2583 34 1 -1.1534 6.7475 -2.1468 35 1 -1.1574 6.7507 2.1317 36 1 -2.6710 6.4627 1.2407 37 1 -1.3902 5.2263 1.2426 38 1 -0.8285 8.8881 0.8819 39 1 -0.8267 8.8876 -0.8980 40 1 -4.9068 11.0510 -0.0152 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594030903.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:57 Heat of formation + Delta-G solvation = -72.411194 kcal Electronic energy + Delta-G solvation = -21987.916987 eV Core-core repulsion = 18576.702608 eV Total energy + Delta-G solvation = -3411.214378 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.96694 -39.62472 -38.77980 -37.24578 -33.91563 -33.30419 -32.13947 -29.94578 -28.02723 -27.56800 -26.59594 -26.11857 -23.27254 -22.26211 -21.92299 -20.37279 -19.27839 -18.48312 -17.42952 -17.33987 -16.83043 -15.96782 -15.53197 -15.50573 -14.79552 -14.47279 -14.07768 -13.68348 -13.54983 -13.44520 -13.24542 -13.09637 -12.75957 -12.53963 -12.38619 -12.28894 -11.91367 -11.28231 -11.16514 -11.03385 -10.64477 -10.53271 -10.33079 -10.26629 -10.00700 -9.76950 -9.54106 -9.02447 -8.98515 -8.55298 -8.29946 -6.06059 -4.03564 0.88896 1.94911 2.13136 2.81208 3.17825 3.30484 3.31957 3.38785 3.42544 4.44179 4.53903 4.64238 4.72253 4.79825 4.99347 5.21752 5.26349 5.31893 5.40562 5.48104 5.57701 5.59621 6.04733 6.06378 6.06768 6.09846 6.26125 6.27217 6.38879 6.55839 6.61417 6.80405 6.85903 6.98059 7.01484 7.16996 7.33625 7.54403 7.76604 8.14586 8.50729 8.97672 9.56524 11.06650 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028845 B = 0.003568 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.473772 B = 7845.262453 C = 8614.070221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.263 6.263 3 C 0.211 3.789 4 C -0.241 4.241 5 C -0.087 4.087 6 C -0.095 4.095 7 C 0.600 3.400 8 O -0.526 6.526 9 N -0.710 5.710 10 C 0.124 3.876 11 C -0.063 4.063 12 C -0.130 4.130 13 C -0.129 4.129 14 C -0.002 4.002 15 C -0.512 4.512 16 H 0.078 0.922 17 C 0.067 3.933 18 N -0.904 5.904 19 Si 0.875 3.125 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.265 1.265 23 O -0.189 6.189 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.110 0.890 27 H 0.163 0.837 28 H 0.167 0.833 29 H 0.403 0.597 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.030 0.970 38 H 0.019 0.981 39 H 0.014 0.986 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.460 -19.580 0.053 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.177 6.177 3 C 0.114 3.886 4 C -0.261 4.261 5 C -0.107 4.107 6 C -0.145 4.145 7 C 0.386 3.614 8 O -0.406 6.406 9 N -0.360 5.360 10 C 0.001 3.999 11 C -0.064 4.064 12 C -0.187 4.187 13 C -0.187 4.187 14 C -0.039 4.039 15 C -0.550 4.550 16 H 0.096 0.904 17 C -0.134 4.134 18 N -0.543 5.543 19 Si 0.702 3.298 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.190 1.190 23 O -0.089 6.089 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.129 0.871 27 H 0.180 0.820 28 H 0.185 0.815 29 H 0.239 0.761 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.710 -18.971 0.055 22.294 hybrid contribution -0.083 0.490 -0.023 0.498 sum 11.627 -18.480 0.033 21.833 Atomic orbital electron populations 1.23198 0.76419 1.05032 1.02965 1.86399 1.23299 1.18841 1.89196 1.20802 0.89551 0.78246 1.00010 1.20767 0.92047 0.96918 1.16367 1.21980 0.97875 0.92475 0.98388 1.22117 0.86983 0.87478 1.17964 1.16376 0.83837 0.83693 0.77445 1.90900 1.44378 1.53599 1.51680 1.46093 1.06765 1.09884 1.73305 1.21752 0.97499 0.78424 1.02186 1.20704 0.90451 0.99393 0.95837 1.21787 1.02897 0.97179 0.96830 1.21786 1.02886 0.97177 0.96825 1.19590 0.98266 0.89470 0.96618 1.21070 0.89779 0.93580 1.50530 0.90415 1.24998 0.94838 0.98893 0.94686 1.69897 1.11563 1.21549 1.51271 0.86855 0.81788 0.82577 0.78536 1.20351 1.21494 1.18952 1.83969 1.37804 1.14274 1.72850 0.91616 0.91610 0.87127 0.81958 0.81517 0.76092 0.91335 0.91335 0.95095 0.90770 0.93285 0.93280 0.90770 0.95094 0.96268 0.96722 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.74 101.05 1.09 1.20 16 2 O -0.26 -2.41 10.55 -41.05 -0.43 -2.85 16 3 C 0.21 2.26 7.86 29.96 0.24 2.50 16 4 C -0.24 -2.43 10.89 -39.73 -0.43 -2.86 16 5 C -0.09 -0.99 10.66 -39.10 -0.42 -1.40 16 6 C -0.09 -1.25 7.15 -36.57 -0.26 -1.51 16 7 C 0.60 9.22 7.77 -13.10 -0.10 9.11 16 8 O -0.53 -9.57 16.87 5.13 0.09 -9.49 16 9 N -0.71 -10.37 4.95 -61.78 -0.31 -10.67 16 10 C 0.12 2.06 4.56 -4.04 -0.02 2.04 16 11 C -0.06 -1.15 0.54 -154.51 -0.08 -1.23 16 12 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 13 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 14 C 0.00 -0.04 3.11 -27.89 -0.09 -0.12 16 15 C -0.51 -13.55 8.20 -34.44 -0.28 -13.84 16 16 H 0.08 2.18 5.92 -52.48 -0.31 1.87 16 17 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 18 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 19 Si 0.87 21.33 27.47 -169.99 -4.67 16.66 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 23 O -0.19 -2.25 9.88 -19.27 -0.19 -2.44 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.11 0.39 8.14 -51.92 -0.42 -0.04 16 27 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 28 H 0.17 1.67 8.06 -52.49 -0.42 1.24 16 29 H 0.40 5.25 5.91 -40.82 -0.24 5.01 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 33 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 37 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 38 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 39 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 332.46 15.07 5.01 5.01 Total: -1.00 -31.18 332.46 -5.28 -36.46 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.69 Total: 1.77 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 0.14 Total: -8.19 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.47 Total: -36.94 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.54 Total: -14.77 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.18 -5.28 -36.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594030903.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.949 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds