Wall clock time and date at job start Tue Mar 31 2020 05:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.46967 * 2 1 4 4 C 1.52994 * 109.47165 * 239.99697 * 2 1 3 5 5 C 1.50700 * 109.46769 * 119.99966 * 2 1 3 6 6 N 1.30870 * 125.88359 * 255.02558 * 5 2 1 7 7 C 1.33692 * 109.76745 * 179.97438 * 6 5 2 8 8 S 1.76199 * 125.61702 * 179.97438 * 7 6 5 9 9 C 1.81397 * 103.00048 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47470 * 184.75097 * 9 8 7 11 11 C 1.50698 * 115.55472 * 40.04849 * 10 9 8 12 12 H 1.08001 * 119.99871 * 270.74747 * 11 10 9 13 13 C 1.37877 * 120.00073 * 90.75943 * 11 10 9 14 14 N 1.31513 * 119.99817 * 174.04079 * 13 11 10 15 15 Si 1.86800 * 120.00068 * 354.03573 * 13 11 10 16 16 H 1.48495 * 109.47086 * 92.57619 * 15 13 11 17 17 H 1.48493 * 109.46994 * 212.57798 * 15 13 11 18 18 H 1.48500 * 109.46729 * 332.57421 * 15 13 11 19 19 C 1.52991 * 117.49927 * 185.73600 * 10 9 8 20 20 C 1.52996 * 60.03189 * 107.47913 * 19 10 9 21 21 N 1.31252 * 108.76693 * 0.21979 * 7 6 5 22 22 N 1.34347 * 125.88697 * 75.00163 * 5 2 1 23 23 H 0.97001 * 126.75909 * 0.03519 * 22 5 2 24 24 H 1.08994 * 109.47159 * 300.00070 * 1 2 3 25 25 H 1.08993 * 109.46783 * 60.00185 * 1 2 3 26 26 H 1.08997 * 109.47232 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46878 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47113 * 299.99963 * 3 2 1 29 29 H 1.08994 * 109.47238 * 59.99978 * 3 2 1 30 30 H 1.09007 * 109.47474 * 300.00394 * 4 2 1 31 31 H 1.09007 * 109.47262 * 60.00114 * 4 2 1 32 32 H 1.08993 * 109.47212 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47271 * 64.75582 * 9 8 7 34 34 H 1.08996 * 109.47433 * 304.75340 * 9 8 7 35 35 H 0.97000 * 120.00029 * 179.97438 * 14 13 11 36 36 H 1.09006 * 117.49877 * 214.97425 * 19 10 9 37 37 H 1.08999 * 117.50224 * 359.97438 * 19 10 9 38 38 H 1.09008 * 117.50325 * 107.50014 * 20 19 10 39 39 H 1.09003 * 117.49899 * 252.51682 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2305 6 7 2.5463 -0.1393 2.2899 7 6 2.8834 -1.0712 3.1873 8 16 3.6107 -0.7634 4.7624 9 6 3.8041 -2.4288 5.4550 10 6 4.3232 -2.3270 6.8907 11 6 3.7282 -1.2185 7.7201 12 1 4.1856 -0.2401 7.7219 13 6 2.5998 -1.4532 8.4769 14 7 2.1484 -0.5235 9.2902 15 14 1.7123 -3.0918 8.3470 16 1 2.2317 -4.0195 9.3837 17 1 0.2566 -2.8839 8.5533 18 1 1.9433 -3.6744 7.0008 19 6 4.6812 -3.6309 7.6065 20 6 5.7903 -2.6865 7.1388 21 7 2.5883 -2.2534 2.6995 22 7 2.0292 -2.0391 1.4291 23 1 1.7073 -2.7172 0.8147 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 -1.7490 -1.2492 31 1 1.6768 -0.2075 -2.1392 32 1 3.1300 -0.7209 -1.2494 33 1 4.5145 -2.9933 4.8510 34 1 2.8401 -2.9375 5.4524 35 1 1.3544 -0.6885 9.8223 36 1 4.4864 -3.6869 8.6775 37 1 4.5464 -4.5613 7.0549 38 1 6.3252 -2.1212 7.9020 39 1 6.3851 -2.9954 6.2791 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594886189.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:46 Heat of formation + Delta-G solvation = 94.436512 kcal Electronic energy + Delta-G solvation = -19623.242023 eV Core-core repulsion = 16694.308326 eV Total energy + Delta-G solvation = -2928.933697 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.90875 -37.04182 -36.99307 -32.36309 -32.09365 -30.48747 -27.99921 -27.67966 -27.44108 -25.41256 -23.35284 -22.30411 -21.63897 -19.56733 -19.10315 -17.72407 -16.49509 -15.74194 -15.56359 -15.30180 -14.87299 -14.30616 -14.13546 -13.81744 -13.62536 -13.11041 -12.70143 -12.59291 -12.49278 -12.38669 -11.98581 -11.97184 -11.49999 -11.33764 -11.15773 -11.07859 -10.76516 -10.47120 -10.32077 -10.17884 -10.07884 -9.72180 -9.55329 -9.52724 -9.03634 -8.59388 -8.40270 -6.89139 -6.11394 -4.13638 1.72429 1.86586 2.69629 3.03740 3.28868 3.30407 3.39706 3.44481 4.05731 4.40337 4.42784 4.58349 4.84204 4.87734 5.12332 5.17395 5.18689 5.34953 5.40793 5.55415 5.64055 5.66728 5.68864 5.73830 5.88837 5.95631 6.06467 6.10561 6.16235 6.24616 6.40947 6.46496 6.48948 6.69451 6.95810 7.10454 7.15599 7.69610 8.18581 8.46410 8.92826 9.51813 10.99908 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.025563 B = 0.004436 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.068264 B = 6310.565757 C = 6528.585891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.012 3.988 3 C -0.130 4.130 4 C -0.146 4.146 5 C 0.293 3.707 6 N -0.512 5.512 7 C 0.201 3.799 8 S 0.077 5.923 9 C -0.077 4.077 10 C 0.009 3.991 11 C -0.486 4.486 12 H 0.086 0.914 13 C 0.088 3.912 14 N -0.888 5.888 15 Si 0.874 3.126 16 H -0.278 1.278 17 H -0.293 1.293 18 H -0.259 1.259 19 C -0.191 4.191 20 C -0.175 4.175 21 N -0.332 5.332 22 N -0.487 5.487 23 H 0.433 0.567 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.266 0.734 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.510 -1.718 -19.986 20.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.009 3.991 3 C -0.188 4.188 4 C -0.204 4.204 5 C 0.012 3.988 6 N -0.242 5.242 7 C -0.187 4.187 8 S 0.307 5.693 9 C -0.227 4.227 10 C 0.007 3.993 11 C -0.525 4.525 12 H 0.103 0.897 13 C -0.116 4.116 14 N -0.524 5.524 15 Si 0.702 3.298 16 H -0.204 1.204 17 H -0.220 1.220 18 H -0.183 1.183 19 C -0.231 4.231 20 C -0.213 4.213 21 N -0.166 5.166 22 N -0.205 5.205 23 H 0.277 0.723 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.175 -0.925 -18.919 18.978 hybrid contribution -1.305 -2.720 -1.099 3.211 sum -2.480 -3.646 -20.018 20.498 Atomic orbital electron populations 1.21928 0.92383 1.02377 1.03352 1.19229 0.96087 0.96147 0.87677 1.21725 1.01898 0.92526 1.02641 1.21966 1.01977 0.99950 0.96490 1.24259 0.95728 0.82397 0.96398 1.70567 1.20766 1.32312 1.00519 1.27263 1.00522 0.88307 1.02606 1.86466 1.73356 1.11437 0.98063 1.23566 1.04199 0.95190 0.99727 1.19060 0.94628 0.95651 0.89987 1.20177 1.11393 0.96126 1.24814 0.89656 1.24903 0.96362 0.96421 0.93919 1.69887 1.23629 1.34037 1.24830 0.86946 0.78596 0.84774 0.79504 1.20383 1.21974 1.18337 1.22991 1.05684 0.93744 1.00648 1.22932 0.92176 1.03856 1.02290 1.78440 1.23055 1.21415 0.93662 1.47787 1.49964 1.07255 1.15481 0.72294 0.91431 0.90914 0.92609 0.91861 0.91972 0.90852 0.92687 0.90698 0.91777 0.91505 0.89839 0.92452 0.89008 0.90866 0.89094 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.46 37.16 0.31 -0.85 16 2 C 0.01 0.11 0.99 -155.66 -0.15 -0.04 16 3 C -0.13 -1.25 8.03 37.16 0.30 -0.95 16 4 C -0.15 -1.02 8.35 37.15 0.31 -0.71 16 5 C 0.29 4.19 6.48 -155.74 -1.01 3.18 16 6 N -0.51 -9.44 10.53 -10.96 -0.12 -9.55 16 7 C 0.20 4.08 8.28 -90.96 -0.75 3.33 16 8 S 0.08 1.68 21.02 -107.50 -2.26 -0.58 16 9 C -0.08 -1.68 5.51 37.16 0.20 -1.47 16 10 C 0.01 0.21 1.12 -155.63 -0.17 0.04 16 11 C -0.49 -13.21 8.14 -34.44 -0.28 -13.49 16 12 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 13 C 0.09 2.48 5.46 -17.82 -0.10 2.38 16 14 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 15 Si 0.87 21.69 25.06 -169.99 -4.26 17.43 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 18 H -0.26 -6.19 5.40 56.52 0.31 -5.88 16 19 C -0.19 -4.03 7.63 -26.74 -0.20 -4.23 16 20 C -0.18 -3.53 9.89 -26.70 -0.26 -3.79 16 21 N -0.33 -6.29 12.36 30.13 0.37 -5.92 16 22 N -0.49 -6.96 7.27 32.61 0.24 -6.72 16 23 H 0.43 4.44 8.52 -182.34 -1.55 2.88 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 30 H 0.05 0.32 7.69 -51.93 -0.40 -0.07 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 1.32 7.95 -51.92 -0.41 0.91 16 34 H 0.08 1.91 6.39 -51.93 -0.33 1.58 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.09 2.02 7.16 -51.93 -0.37 1.65 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.09 1.83 8.14 -51.92 -0.42 1.41 16 39 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 LS Contribution 331.65 15.07 5.00 5.00 Total: -1.00 -32.07 331.65 -9.43 -41.50 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.37 Total: 1.29 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -1.81 Total: -16.60 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 1.27 Total: -48.03 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.26 Total: 17.43 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.26 Total: -0.58 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.07 -9.43 -41.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594886189.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.937 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds