Wall clock time and date at job start Tue Mar 31 2020 05:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47086 * 2 1 4 4 C 1.50697 * 109.47284 * 239.99665 * 2 1 3 5 5 N 1.30299 * 126.33860 * 59.68776 * 4 2 1 6 6 N 1.28531 * 110.07916 * 179.82134 * 5 4 2 7 7 C 1.31278 * 109.85580 * 0.45449 * 6 5 4 8 8 S 1.76199 * 126.48590 * 179.74541 * 7 6 5 9 9 C 1.80997 * 99.99849 * 359.97438 * 8 7 6 10 10 C 1.53002 * 109.47233 * 175.09575 * 9 8 7 11 11 C 1.50695 * 115.54860 * 39.81750 * 10 9 8 12 12 H 1.08000 * 120.00504 * 272.70434 * 11 10 9 13 13 C 1.37881 * 120.00159 * 92.69881 * 11 10 9 14 14 N 1.31519 * 120.00086 * 173.34075 * 13 11 10 15 15 Si 1.86793 * 119.99738 * 353.34924 * 13 11 10 16 16 H 1.48504 * 109.47660 * 94.21155 * 15 13 11 17 17 H 1.48506 * 109.47184 * 214.21057 * 15 13 11 18 18 H 1.48499 * 109.47482 * 334.20794 * 15 13 11 19 19 C 1.53002 * 117.49992 * 254.11235 * 10 9 8 20 20 C 1.53001 * 117.49914 * 185.48939 * 10 9 8 21 21 N 1.36542 * 107.03418 * 359.73116 * 7 6 5 22 22 C 1.46500 * 127.14725 * 180.02562 * 21 7 6 23 23 H 1.09007 * 109.47522 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47134 * 60.00153 * 1 2 3 25 25 H 1.08999 * 109.47241 * 299.99955 * 1 2 3 26 26 H 1.09005 * 109.46892 * 120.00305 * 2 1 3 27 27 H 1.09006 * 109.46464 * 180.02562 * 3 2 1 28 28 H 1.08992 * 109.47185 * 299.99898 * 3 2 1 29 29 H 1.08999 * 109.47044 * 59.99924 * 3 2 1 30 30 H 1.09001 * 109.47032 * 295.09586 * 9 8 7 31 31 H 1.09005 * 109.46894 * 55.09778 * 9 8 7 32 32 H 0.96995 * 119.99502 * 180.02562 * 14 13 11 33 33 H 1.08998 * 117.49657 * 359.97438 * 19 10 9 34 34 H 1.09000 * 117.49815 * 145.02251 * 19 10 9 35 35 H 1.09003 * 117.49569 * 214.97767 * 20 10 9 36 36 H 1.08997 * 117.49861 * 359.97085 * 20 10 9 37 37 H 1.09004 * 109.46693 * 269.99712 * 22 21 7 38 38 H 1.08993 * 109.47277 * 29.99537 * 22 21 7 39 39 H 1.08996 * 109.47028 * 149.99801 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 1.7903 -0.3781 -2.4668 6 7 2.3759 -1.1964 -3.2664 7 6 3.0210 -2.1086 -2.5772 8 16 3.9656 -3.4438 -3.2328 9 6 3.7507 -3.1406 -5.0042 10 6 4.6033 -4.1323 -5.7984 11 6 4.6367 -5.5388 -5.2586 12 1 5.3639 -5.8122 -4.5084 13 6 3.7386 -6.4767 -5.7221 14 7 3.8496 -7.7334 -5.3506 15 14 2.3643 -5.9624 -6.8780 16 1 2.7942 -6.1742 -8.2836 17 1 1.1543 -6.7780 -6.6023 18 1 2.0516 -4.5261 -6.6671 19 6 5.8755 -3.5986 -6.4600 20 6 4.6600 -3.9570 -7.3173 21 7 2.8217 -1.8270 -1.2561 22 6 3.3454 -2.5667 -0.1051 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 2.7015 -3.2691 -5.2702 31 1 4.0632 -2.1231 -5.2392 32 1 3.2181 -8.3932 -5.6771 33 1 6.1049 -2.5411 -6.3297 34 1 6.7370 -4.2650 -6.5047 35 1 4.7219 -4.8591 -7.9260 36 1 4.0896 -3.1356 -7.7508 37 1 2.6364 -3.3438 0.1804 38 1 4.2985 -3.0241 -0.3702 39 1 3.4908 -1.8825 0.7309 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594890863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:45 Heat of formation + Delta-G solvation = 89.452800 kcal Electronic energy + Delta-G solvation = -19762.747799 eV Core-core repulsion = 16833.597993 eV Total energy + Delta-G solvation = -2929.149807 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.59737 -37.04683 -35.83652 -34.67436 -32.17483 -29.76588 -28.02114 -27.50371 -27.36702 -25.48471 -23.36353 -22.37833 -21.68080 -19.87051 -19.17408 -17.39999 -16.52087 -16.21985 -15.97849 -15.04786 -14.95129 -14.41617 -13.85592 -13.67062 -13.56676 -13.30294 -13.08484 -13.01780 -12.63176 -12.34987 -12.27377 -11.79727 -11.46695 -11.31774 -11.26907 -11.10499 -10.80019 -10.48293 -10.41333 -10.22776 -10.03521 -9.87155 -9.63677 -9.49330 -9.05920 -8.66475 -8.47243 -6.98063 -6.20215 -4.23631 1.66783 1.90933 2.79215 2.96603 3.08156 3.27108 3.37787 3.44225 4.22627 4.37633 4.52782 4.63979 4.84598 4.87365 5.01300 5.08894 5.10072 5.33629 5.41407 5.43059 5.55306 5.64250 5.65507 5.72640 5.86926 5.90771 6.03311 6.08617 6.15700 6.16029 6.27473 6.41917 6.45296 6.67621 6.91340 6.92048 7.08015 7.63172 8.37352 8.82113 8.94629 9.43431 10.90563 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.025676 B = 0.004604 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.234615 B = 6079.708953 C = 6189.023590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.000 4.000 3 C -0.141 4.141 4 C 0.167 3.833 5 N -0.285 5.285 6 N -0.308 5.308 7 C 0.152 3.848 8 S 0.051 5.949 9 C -0.063 4.063 10 C 0.006 3.994 11 C -0.491 4.491 12 H 0.084 0.916 13 C 0.088 3.912 14 N -0.887 5.887 15 Si 0.874 3.126 16 H -0.277 1.277 17 H -0.292 1.292 18 H -0.256 1.256 19 C -0.175 4.175 20 C -0.190 4.190 21 N -0.471 5.471 22 C 0.074 3.926 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.267 0.733 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 12.686 11.948 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 C -0.199 4.199 4 C -0.103 4.103 5 N -0.124 5.124 6 N -0.152 5.152 7 C -0.221 4.221 8 S 0.282 5.718 9 C -0.212 4.212 10 C 0.004 3.996 11 C -0.530 4.530 12 H 0.102 0.898 13 C -0.116 4.116 14 N -0.523 5.523 15 Si 0.702 3.298 16 H -0.203 1.203 17 H -0.219 1.219 18 H -0.180 1.180 19 C -0.213 4.213 20 C -0.230 4.230 21 N -0.165 5.165 22 C -0.069 4.069 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.376 12.404 11.345 16.977 hybrid contribution -0.989 0.279 -0.227 1.052 sum -3.365 12.683 11.118 17.199 Atomic orbital electron populations 1.21800 0.92874 1.02392 1.02837 1.19497 0.96681 0.95534 0.90426 1.21801 1.01090 0.94127 1.02858 1.24877 0.98125 0.89773 0.97552 1.73786 1.19313 1.21458 0.97875 1.74688 1.12383 1.03176 1.24970 1.28121 1.05806 1.04719 0.83470 1.86273 1.58099 1.22037 1.05375 1.23472 1.04651 1.01539 0.91520 1.19093 0.95272 0.95294 0.89986 1.20172 1.18714 0.89745 1.24358 0.89843 1.24934 0.96869 0.94361 0.95467 1.69892 1.36566 1.01374 1.44478 0.86922 0.81804 0.79834 0.81234 1.20337 1.21907 1.17984 1.22932 0.92950 0.99311 1.06061 1.22986 1.02771 1.02067 0.95133 1.46291 1.40128 1.23364 1.06722 1.22080 1.01373 0.96958 0.86492 0.92612 0.91250 0.91653 0.89957 0.92679 0.91257 0.91650 0.89551 0.90671 0.92361 0.90713 0.89166 0.89035 0.90597 0.89884 0.88590 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.18 37.16 0.34 -0.99 16 2 C 0.00 0.00 3.29 -91.77 -0.30 -0.30 16 3 C -0.14 -1.28 9.18 37.16 0.34 -0.93 16 4 C 0.17 2.52 6.58 -153.99 -1.01 1.50 16 5 N -0.28 -5.36 12.18 33.00 0.40 -4.96 16 6 N -0.31 -6.41 11.60 30.68 0.36 -6.05 16 7 C 0.15 2.88 8.07 -88.34 -0.71 2.17 16 8 S 0.05 1.01 20.65 -107.50 -2.22 -1.21 16 9 C -0.06 -1.34 5.22 37.16 0.19 -1.14 16 10 C 0.01 0.14 1.12 -155.66 -0.17 -0.04 16 11 C -0.49 -12.92 8.14 -34.44 -0.28 -13.20 16 12 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 13 C 0.09 2.42 5.46 -17.82 -0.10 2.32 16 14 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 15 Si 0.87 21.36 24.98 -169.99 -4.25 17.11 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 18 H -0.26 -6.05 5.46 56.52 0.31 -5.74 16 19 C -0.18 -3.48 9.88 -26.73 -0.26 -3.74 16 20 C -0.19 -3.98 7.53 -26.73 -0.20 -4.18 16 21 N -0.47 -7.22 3.21 -120.91 -0.39 -7.61 16 22 C 0.07 0.77 10.78 59.85 0.65 1.41 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.65 6.94 -51.93 -0.36 0.29 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 1.96 6.59 -51.92 -0.34 1.62 16 31 H 0.07 1.51 7.95 -51.91 -0.41 1.10 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 34 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 35 H 0.09 1.99 6.99 -51.93 -0.36 1.63 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.99 7.86 -51.93 -0.41 0.58 16 39 H 0.09 0.63 7.23 -51.93 -0.38 0.25 16 LS Contribution 331.95 15.07 5.00 5.00 Total: -1.00 -31.77 331.95 -7.98 -39.75 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.14 Total: 0.22 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -1.52 Total: -17.12 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 1.14 Total: -43.75 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.25 Total: 17.11 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.22 Total: -1.21 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.77 -7.98 -39.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594890863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.205 kcal (2) G-P(sol) polarization free energy of solvation -31.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds