Wall clock time and date at job start Tue Mar 31 2020 06:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47309 * 2 1 4 4 C 1.53002 * 109.47160 * 240.00225 * 2 1 3 5 5 N 1.46500 * 109.47297 * 120.00143 * 2 1 3 6 6 C 1.36763 * 127.13941 * 0.17788 * 5 2 1 7 7 N 1.30299 * 107.31685 * 180.25836 * 6 5 2 8 8 N 1.28526 * 110.07564 * 359.74254 * 7 6 5 9 9 C 1.31280 * 109.85932 * 359.97438 * 8 7 6 10 10 S 1.76200 * 126.48324 * 180.02562 * 9 8 7 11 11 C 1.81001 * 100.00104 * 0.02860 * 10 9 8 12 12 C 1.52997 * 109.46918 * 179.97438 * 11 10 9 13 13 C 1.50697 * 115.55464 * 39.92520 * 12 11 10 14 14 H 1.08002 * 119.99929 * 264.90906 * 13 12 11 15 15 C 1.37881 * 119.99815 * 84.90685 * 13 12 11 16 16 N 1.31512 * 120.00112 * 353.81871 * 15 13 12 17 17 Si 1.86794 * 119.99798 * 173.82794 * 15 13 12 18 18 H 1.48502 * 109.47365 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47303 * 119.99973 * 17 15 13 20 20 H 1.48501 * 109.47032 * 239.99586 * 17 15 13 21 21 C 1.53011 * 117.49840 * 254.21683 * 12 11 10 22 22 C 1.53001 * 117.49850 * 185.59687 * 12 11 10 23 23 H 1.09004 * 109.46824 * 299.99889 * 1 2 3 24 24 H 1.09005 * 109.46682 * 59.99627 * 1 2 3 25 25 H 1.08997 * 109.47202 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47210 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47272 * 300.00169 * 3 2 1 28 28 H 1.09004 * 109.47087 * 60.00272 * 3 2 1 29 29 H 1.09003 * 109.46816 * 300.00376 * 4 2 1 30 30 H 1.09003 * 109.47004 * 59.99960 * 4 2 1 31 31 H 1.08998 * 109.46956 * 180.02562 * 4 2 1 32 32 H 1.07996 * 126.34061 * 359.97438 * 6 5 2 33 33 H 1.08997 * 109.46780 * 299.99738 * 11 10 9 34 34 H 1.09002 * 109.46806 * 59.99896 * 11 10 9 35 35 H 0.96999 * 119.99919 * 174.97476 * 16 15 13 36 36 H 1.09000 * 117.49612 * 0.02562 * 21 12 11 37 37 H 1.08995 * 117.49701 * 145.02594 * 21 12 11 38 38 H 1.09001 * 117.50433 * 214.97730 * 22 12 11 39 39 H 1.09005 * 117.49620 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 1.2658 -1.2646 2.1834 7 7 2.0910 -1.7627 3.0601 8 7 3.3046 -1.5494 2.6948 9 6 3.3193 -0.8983 1.5549 10 16 4.7476 -0.3830 0.6610 11 6 6.0462 -1.0058 1.7574 12 6 7.4169 -0.6659 1.1688 13 6 7.5341 0.6985 0.5398 14 1 7.3915 0.8167 -0.5242 15 6 7.8234 1.7959 1.3228 16 7 7.8770 1.6745 2.6312 17 14 8.1390 3.4552 0.5252 18 1 8.0206 3.3262 -0.9495 19 1 7.1418 4.4391 1.0180 20 1 9.5060 3.9196 0.8728 21 6 8.2168 -1.8068 0.5365 22 6 8.6501 -1.2229 1.8828 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9564 -0.8899 28 1 1.6768 1.9564 0.8900 29 1 1.6766 -1.7489 -1.2493 30 1 1.6767 -0.2073 -2.1393 31 1 3.1300 -0.7216 -1.2490 32 1 0.1873 -1.2948 2.2301 33 1 5.9465 -0.5419 2.7386 34 1 5.9512 -2.0872 1.8553 35 1 8.1515 2.4276 3.1774 36 1 7.7663 -2.7993 0.5396 37 1 8.8280 -1.5705 -0.3345 38 1 9.5463 -0.6027 1.8973 39 1 8.4849 -1.8312 2.7721 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594891902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:16 Heat of formation + Delta-G solvation = 91.244800 kcal Electronic energy + Delta-G solvation = -20313.277218 eV Core-core repulsion = 17384.205119 eV Total energy + Delta-G solvation = -2929.072100 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.50202 -37.48308 -36.60593 -32.02033 -31.62118 -30.42815 -27.98979 -27.49615 -27.36843 -25.40786 -23.37686 -21.61506 -21.13953 -20.41974 -19.09949 -17.37362 -16.32422 -15.81971 -15.50974 -14.88330 -14.65705 -14.21414 -13.94539 -13.81133 -13.49711 -13.06161 -12.90840 -12.56605 -12.52624 -12.19590 -11.90906 -11.62257 -11.50657 -11.22210 -11.09464 -10.95593 -10.89219 -10.53398 -10.37353 -10.20495 -9.89068 -9.71708 -9.59255 -9.50592 -8.83772 -8.51638 -8.08520 -6.81949 -6.11158 -4.18981 1.84660 2.08633 2.86228 3.16511 3.24986 3.26248 3.33796 3.36412 4.31868 4.35267 4.55675 4.66168 4.76032 5.18837 5.21653 5.27452 5.32183 5.46936 5.49728 5.54719 5.63016 5.69655 5.70373 5.92892 6.01351 6.13967 6.19358 6.25559 6.41837 6.46865 6.51243 6.72163 6.86390 7.06849 7.10063 7.30937 7.44764 7.79593 8.29055 8.82592 9.07308 9.47801 10.97029 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.018406 B = 0.006149 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.857914 B = 4552.171564 C = 5228.796014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 C -0.169 4.169 4 C -0.166 4.166 5 N -0.462 5.462 6 C 0.134 3.866 7 N -0.295 5.295 8 N -0.307 5.307 9 C 0.162 3.838 10 S 0.036 5.964 11 C -0.050 4.050 12 C 0.048 3.952 13 C -0.496 4.496 14 H 0.065 0.935 15 C 0.080 3.920 16 N -0.867 5.867 17 Si 0.885 3.115 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.207 4.207 22 C -0.146 4.146 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.210 0.790 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.262 0.738 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.093 -1.909 -7.265 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.074 3.926 3 C -0.227 4.227 4 C -0.224 4.224 5 N -0.158 5.158 6 C -0.156 4.156 7 N -0.134 5.134 8 N -0.151 5.151 9 C -0.211 4.211 10 S 0.268 5.732 11 C -0.198 4.198 12 C 0.046 3.954 13 C -0.535 4.535 14 H 0.083 0.917 15 C -0.125 4.125 16 N -0.502 5.502 17 Si 0.713 3.287 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.245 4.245 22 C -0.186 4.186 23 H 0.086 0.914 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.227 0.773 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.593 -1.918 -6.858 14.467 hybrid contribution -0.501 0.914 -0.061 1.044 sum -13.094 -1.003 -6.919 14.843 Atomic orbital electron populations 1.22140 0.92145 1.03185 1.03751 1.20903 0.95223 0.93239 0.83194 1.22313 1.04481 0.92917 1.02957 1.22289 1.04044 1.00486 0.95558 1.46901 1.05162 1.43741 1.20009 1.26370 1.00126 1.01029 0.88052 1.73861 0.96481 1.19565 1.23534 1.74707 1.13082 1.17925 1.09417 1.28013 0.91313 1.02783 0.99007 1.85830 0.88879 1.70501 1.28013 1.23312 0.95319 1.00440 1.00772 1.18530 0.85917 0.92693 0.98282 1.20381 1.49978 0.89378 0.93811 0.91733 1.24942 0.94420 0.98571 0.94587 1.70023 1.44777 1.31756 1.03673 0.86640 0.77961 0.84260 0.79884 1.19495 1.20868 1.20901 1.23100 1.06860 0.97241 0.97254 1.22555 1.00755 1.02447 0.92836 0.91396 0.89984 0.91451 0.89479 0.90360 0.91847 0.91930 0.90300 0.89869 0.77310 0.88917 0.91936 0.92841 0.91434 0.90146 0.89739 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 7.41 37.16 0.28 -0.94 16 2 C 0.16 1.84 1.10 -131.82 -0.14 1.69 16 3 C -0.17 -2.04 8.52 37.16 0.32 -1.72 16 4 C -0.17 -1.81 8.52 37.16 0.32 -1.50 16 5 N -0.46 -7.15 2.66 -104.23 -0.28 -7.43 16 6 C 0.13 2.03 11.70 -88.95 -1.04 0.99 16 7 N -0.30 -5.79 12.18 29.90 0.36 -5.43 16 8 N -0.31 -6.68 11.60 30.68 0.36 -6.32 16 9 C 0.16 3.16 7.56 -88.35 -0.67 2.50 16 10 S 0.04 0.72 16.96 -107.50 -1.82 -1.11 16 11 C -0.05 -1.13 5.35 37.16 0.20 -0.93 16 12 C 0.05 1.14 1.64 -155.66 -0.26 0.88 16 13 C -0.50 -12.68 7.54 -34.44 -0.26 -12.94 16 14 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 15 C 0.08 2.09 5.39 -17.82 -0.10 2.00 16 16 N -0.87 -23.81 12.93 55.43 0.72 -23.09 16 17 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C -0.21 -4.38 9.88 -26.72 -0.26 -4.64 16 22 C -0.15 -3.34 9.47 -26.73 -0.25 -3.60 16 23 H 0.07 0.51 7.94 -51.93 -0.41 0.10 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.48 7.93 -51.93 -0.41 0.07 16 26 H 0.09 1.30 6.03 -51.93 -0.31 0.99 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.10 6.03 -51.93 -0.31 0.79 16 32 H 0.21 2.12 7.37 -52.49 -0.39 1.73 16 33 H 0.09 2.38 8.14 -51.92 -0.42 1.95 16 34 H 0.06 1.37 7.95 -51.92 -0.41 0.96 16 35 H 0.26 6.90 8.32 -40.82 -0.34 6.57 16 36 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 37 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 38 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 332.02 15.07 5.00 5.00 Total: -1.00 -30.25 332.02 -8.58 -38.83 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.02 Total: 2.48 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -1.88 Total: -18.20 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 1.16 Total: -42.27 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -1.82 Total: -1.11 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.25 -8.58 -38.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594891902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.070 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds