Wall clock time and date at job start Tue Mar 31 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30292 * 126.34003 * 2 1 4 4 N 1.28526 * 110.08212 * 179.97438 * 3 2 1 5 5 C 1.31290 * 109.85294 * 359.75899 * 4 3 2 6 6 S 1.76197 * 126.48464 * 180.26636 * 5 4 3 7 7 C 1.80994 * 100.00086 * 0.13549 * 6 5 4 8 8 C 1.53005 * 109.47129 * 180.02562 * 7 6 5 9 9 C 1.50700 * 115.55141 * 39.92695 * 8 7 6 10 10 H 1.08001 * 119.99333 * 264.91082 * 9 8 7 11 11 C 1.37872 * 120.00274 * 84.90605 * 9 8 7 12 12 N 1.31519 * 120.00054 * 353.82488 * 11 9 8 13 13 Si 1.86804 * 120.00146 * 173.82137 * 11 9 8 14 14 H 1.48501 * 109.46770 * 60.00150 * 13 11 9 15 15 H 1.48498 * 109.47203 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46827 * 300.00322 * 13 11 9 17 17 C 1.53002 * 117.49506 * 254.21587 * 8 7 6 18 18 C 1.53001 * 60.00047 * 252.51036 * 17 8 7 19 19 N 1.36542 * 107.02882 * 0.37877 * 5 4 3 20 20 C 1.46504 * 127.13682 * 179.89921 * 19 5 4 21 21 C 1.52996 * 109.47105 * 299.67756 * 20 19 5 22 22 C 1.52993 * 109.47492 * 59.68451 * 20 19 5 23 23 H 1.08996 * 109.47496 * 270.02666 * 1 2 3 24 24 H 1.09002 * 109.47060 * 30.03100 * 1 2 3 25 25 H 1.08997 * 109.46808 * 150.02456 * 1 2 3 26 26 H 1.09010 * 109.47284 * 300.00069 * 7 6 5 27 27 H 1.09000 * 109.47333 * 60.00178 * 7 6 5 28 28 H 0.96993 * 120.00425 * 174.95693 * 12 11 9 29 29 H 1.09002 * 117.50058 * 0.02562 * 17 8 7 30 30 H 1.09005 * 117.49386 * 145.02386 * 17 8 7 31 31 H 1.09002 * 117.50140 * 252.51597 * 18 17 8 32 32 H 1.09003 * 117.51656 * 107.48039 * 18 17 8 33 33 H 1.09001 * 109.46649 * 179.68428 * 20 19 5 34 34 H 1.09001 * 109.46819 * 60.00776 * 21 20 19 35 35 H 1.09007 * 109.46819 * 180.02562 * 21 20 19 36 36 H 1.08998 * 109.47689 * 300.00892 * 21 20 19 37 37 H 1.09005 * 109.46986 * 59.99275 * 22 20 19 38 38 H 1.08998 * 109.47528 * 179.97438 * 22 20 19 39 39 H 1.09001 * 109.47155 * 299.99667 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2791 1.0495 0.0000 4 7 3.5130 0.6897 0.0005 5 6 3.5953 -0.6206 0.0061 6 16 5.0749 -1.5774 0.0156 7 6 6.3067 -0.2513 0.0192 8 6 7.7107 -0.8594 0.0270 9 6 7.8969 -2.0760 -0.8427 10 1 7.8020 -3.0638 -0.4166 11 6 8.1883 -1.9279 -2.1821 12 7 8.1841 -0.7312 -2.7276 13 14 8.5891 -3.4270 -3.2221 14 1 7.4358 -4.3625 -3.2071 15 1 8.8641 -3.0019 -4.6181 16 1 9.7864 -4.1083 -2.6676 17 6 8.4993 -0.7991 1.3367 18 6 8.8951 0.0995 0.1633 19 7 2.3174 -1.1016 0.0006 20 6 1.9010 -2.5062 0.0016 21 6 2.4473 -3.2009 -1.2473 22 6 2.4477 -3.1994 1.2512 23 1 -0.3634 0.0005 1.0276 24 1 -0.3633 0.8897 -0.5143 25 1 -0.3633 -0.8902 -0.5134 26 1 6.1820 0.3629 -0.8727 27 1 6.1730 0.3664 0.9073 28 1 8.4598 -0.6179 -3.6506 29 1 8.0178 -0.3266 2.1929 30 1 9.1531 -1.6397 1.5696 31 1 9.8091 -0.1498 -0.3757 32 1 8.6741 1.1636 0.2471 33 1 0.8125 -2.5624 0.0018 34 1 3.5358 -3.1448 -1.2475 35 1 2.1370 -4.2459 -1.2467 36 1 2.0579 -2.7071 -2.1376 37 1 2.0585 -2.7043 2.1409 38 1 2.1375 -4.2443 1.2521 39 1 3.5362 -3.1432 1.2510 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594894596.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:24 Heat of formation + Delta-G solvation = 86.637569 kcal Electronic energy + Delta-G solvation = -20213.896949 eV Core-core repulsion = 17284.625065 eV Total energy + Delta-G solvation = -2929.271884 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.48921 -36.68598 -36.43773 -32.36188 -32.01218 -31.04676 -28.08740 -27.37487 -27.15915 -25.35864 -23.59646 -21.40422 -21.13563 -20.43454 -19.12624 -17.19664 -16.31207 -15.95093 -15.73775 -14.67055 -14.61533 -14.01322 -13.73893 -13.47975 -13.45436 -13.19105 -13.03326 -12.78658 -12.53218 -12.33178 -12.07817 -11.61828 -11.58293 -11.30662 -11.07838 -10.91917 -10.91347 -10.54582 -10.35773 -10.19685 -9.91063 -9.71365 -9.57833 -9.29953 -8.83909 -8.50414 -8.08170 -6.79424 -6.10405 -4.18507 1.84151 2.03658 2.87885 3.17036 3.21955 3.27711 3.33091 3.34714 4.35536 4.43573 4.51813 4.77936 4.84365 4.98252 5.19276 5.27730 5.36186 5.43493 5.46894 5.55905 5.68710 5.69912 5.79397 5.98073 6.02211 6.13046 6.19845 6.29282 6.42495 6.47117 6.51422 6.72265 6.86553 7.06987 7.08747 7.31164 7.44977 7.79731 8.29315 8.82466 9.08269 9.48160 10.97718 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.005922 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.046204 B = 4726.786068 C = 5300.274595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.156 3.844 3 N -0.292 5.292 4 N -0.305 5.305 5 C 0.162 3.838 6 S 0.037 5.963 7 C -0.050 4.050 8 C 0.049 3.951 9 C -0.497 4.497 10 H 0.063 0.937 11 C 0.081 3.919 12 N -0.868 5.868 13 Si 0.886 3.114 14 H -0.274 1.274 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.207 4.207 18 C -0.146 4.146 19 N -0.465 5.465 20 C 0.133 3.867 21 C -0.175 4.175 22 C -0.172 4.172 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.062 0.938 28 H 0.263 0.737 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.292 -5.192 5.186 15.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.114 4.114 3 N -0.132 5.132 4 N -0.149 5.149 5 C -0.211 4.211 6 S 0.269 5.731 7 C -0.199 4.199 8 C 0.046 3.954 9 C -0.536 4.536 10 H 0.082 0.918 11 C -0.125 4.125 12 N -0.503 5.503 13 Si 0.713 3.287 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.245 4.245 18 C -0.186 4.186 19 N -0.161 5.161 20 C 0.030 3.970 21 C -0.233 4.233 22 C -0.230 4.230 23 H 0.098 0.902 24 H 0.109 0.891 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.799 -4.806 4.984 14.552 hybrid contribution -0.303 -0.577 -0.742 0.988 sum -13.102 -5.383 4.242 14.786 Atomic orbital electron populations 1.20102 0.84351 1.03943 1.03390 1.24894 0.96539 0.82888 1.07087 1.73850 0.97033 1.24327 1.18006 1.74699 1.11271 1.07292 1.21628 1.27937 0.92193 0.95740 1.05263 1.85825 0.87441 1.09132 1.90718 1.23316 0.95919 0.96499 1.04139 1.18516 0.85805 0.96894 0.94135 1.20295 1.50134 0.90659 0.92558 0.91849 1.24938 0.94426 0.95713 0.97400 1.70002 1.44625 1.21759 1.13871 0.86750 0.79128 0.83373 0.79429 1.19888 1.21230 1.20148 1.23099 1.06416 1.02775 0.92165 1.22555 1.01050 0.94543 1.00443 1.46655 1.05080 1.07853 1.56487 1.21471 1.00336 0.77260 0.97927 1.22298 1.04574 1.00541 0.95870 1.22271 1.04145 1.00681 0.95881 0.90173 0.89069 0.90908 0.88923 0.91958 0.92725 0.91443 0.90149 0.89733 0.91594 0.88197 0.89468 0.90306 0.91941 0.92019 0.90241 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.10 36.01 0.36 -0.22 16 2 C 0.16 2.49 8.07 -154.00 -1.24 1.25 16 3 N -0.29 -5.89 12.17 32.99 0.40 -5.49 16 4 N -0.31 -6.78 11.60 30.68 0.36 -6.42 16 5 C 0.16 3.22 7.56 -88.33 -0.67 2.55 16 6 S 0.04 0.75 16.96 -107.50 -1.82 -1.08 16 7 C -0.05 -1.15 5.35 37.16 0.20 -0.95 16 8 C 0.05 1.16 1.64 -155.66 -0.26 0.90 16 9 C -0.50 -12.73 7.54 -34.44 -0.26 -12.99 16 10 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 11 C 0.08 2.11 5.39 -17.82 -0.10 2.02 16 12 N -0.87 -23.89 12.93 55.43 0.72 -23.17 16 13 Si 0.89 20.34 29.55 -169.99 -5.02 15.31 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 C -0.21 -4.40 9.88 -26.73 -0.26 -4.66 16 18 C -0.15 -3.36 9.47 -26.73 -0.25 -3.61 16 19 N -0.46 -7.47 2.66 -106.47 -0.28 -7.75 16 20 C 0.13 1.57 3.45 -67.93 -0.23 1.34 16 21 C -0.17 -2.11 9.24 37.16 0.34 -1.77 16 22 C -0.17 -1.88 9.23 37.15 0.34 -1.54 16 23 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.55 7.25 -51.93 -0.38 0.17 16 26 H 0.09 2.39 8.14 -51.91 -0.42 1.97 16 27 H 0.06 1.38 7.95 -51.92 -0.41 0.96 16 28 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 29 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 30 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 31 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 32 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.10 0.87 6.89 -51.93 -0.36 0.51 16 34 H 0.09 1.32 6.06 -51.93 -0.31 1.00 16 35 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.12 6.00 -51.93 -0.31 0.80 16 LS Contribution 333.93 15.07 5.03 5.03 Total: -1.00 -30.67 333.93 -8.61 -39.29 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.97 Total: 1.96 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -2.03 Total: -17.68 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 1.19 Total: -42.84 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -1.82 Total: -1.08 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.67 -8.61 -39.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594894596.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.926 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds