Wall clock time and date at job start Tue Mar 31 2020 05:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47018 * 2 1 4 4 N 1.29422 * 125.69311 * 90.03251 * 3 2 1 5 5 N 1.26393 * 116.47473 * 179.97438 * 4 3 2 6 6 C 1.29417 * 116.47808 * 359.97438 * 5 4 3 7 7 C 1.50703 * 125.70047 * 179.97438 * 6 5 4 8 8 N 1.46907 * 109.46848 * 90.02640 * 7 6 5 9 9 C 1.46854 * 110.99760 * 293.95332 * 8 7 6 10 10 C 1.53038 * 109.51962 * 174.16278 * 9 8 7 11 11 C 1.53114 * 109.27998 * 59.18258 * 10 9 8 12 12 C 1.53125 * 109.15968 * 302.34482 * 11 10 9 13 13 H 1.09003 * 109.49727 * 297.67230 * 12 11 10 14 14 C 1.50702 * 109.50387 * 177.59658 * 12 11 10 15 15 H 1.07997 * 119.99836 * 245.37861 * 14 12 11 16 16 C 1.37875 * 119.99840 * 65.38005 * 14 12 11 17 17 N 1.31518 * 119.99571 * 185.17229 * 16 14 12 18 18 Si 1.86795 * 120.00340 * 5.16679 * 16 14 12 19 19 H 1.48505 * 109.47378 * 270.00021 * 18 16 14 20 20 H 1.48503 * 109.47382 * 150.00083 * 18 16 14 21 21 H 1.48500 * 109.47303 * 30.00320 * 18 16 14 22 22 C 1.46848 * 110.99835 * 169.74925 * 8 7 6 23 23 S 1.71219 * 125.70051 * 270.25148 * 3 2 1 24 24 H 1.09009 * 109.46754 * 299.99608 * 1 2 3 25 25 H 1.08998 * 109.47548 * 59.99465 * 1 2 3 26 26 H 1.09001 * 109.47328 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47040 * 240.00597 * 2 1 3 28 28 H 1.08998 * 109.47548 * 120.00535 * 2 1 3 29 29 H 1.08991 * 109.47148 * 330.02820 * 7 6 5 30 30 H 1.09002 * 109.47461 * 210.02264 * 7 6 5 31 31 H 1.09001 * 109.46327 * 54.14972 * 9 8 7 32 32 H 1.09001 * 109.45289 * 294.17362 * 9 8 7 33 33 H 1.08994 * 109.50425 * 299.23696 * 10 9 8 34 34 H 1.09002 * 109.53327 * 179.13982 * 10 9 8 35 35 H 1.08999 * 109.52465 * 182.43962 * 11 10 9 36 36 H 1.09006 * 109.57785 * 62.27664 * 11 10 9 37 37 H 0.96993 * 120.00348 * 354.98893 * 17 16 14 38 38 H 1.08995 * 109.46210 * 65.81866 * 22 8 7 39 39 H 1.08998 * 109.45841 * 305.85051 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2845 2.1325 1.0511 5 7 2.7008 3.3087 0.8486 6 6 2.8290 3.6706 -0.3873 7 6 3.3055 5.0185 -0.8640 8 7 4.7661 4.9947 -1.0191 9 6 5.4306 4.8286 0.2799 10 6 6.9369 4.6625 0.0663 11 6 7.4846 5.8977 -0.6539 12 6 6.7424 6.0759 -1.9813 13 1 6.9260 5.2116 -2.6196 14 6 7.2343 7.3231 -2.6694 15 1 6.5659 8.1587 -2.8152 16 6 8.5377 7.3973 -3.1129 17 7 8.9964 8.5202 -3.6211 18 14 9.6521 5.9030 -2.9917 19 1 10.3577 5.9164 -1.6850 20 1 10.6482 5.9377 -4.0925 21 1 8.8364 4.6670 -3.1011 22 6 5.2418 6.2010 -1.7084 23 16 2.3596 2.3648 -1.3904 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.0299 5.7801 -0.1346 30 1 2.8420 5.2494 -1.8232 31 1 5.0351 3.9444 0.7798 32 1 5.2461 5.7079 0.8972 33 1 7.1229 3.7757 -0.5395 34 1 7.4321 4.5545 1.0312 35 1 8.5491 5.7648 -0.8468 36 1 7.3345 6.7799 -0.0315 37 1 8.3992 9.2733 -3.7513 38 1 5.0582 7.0736 -1.0816 39 1 4.7090 6.3136 -2.6526 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595620197.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:07 Heat of formation + Delta-G solvation = 50.478907 kcal Electronic energy + Delta-G solvation = -19829.969895 eV Core-core repulsion = 16899.130053 eV Total energy + Delta-G solvation = -2930.839841 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.36858 -38.54271 -35.09393 -34.02415 -32.34811 -30.64322 -30.11421 -27.77566 -25.40067 -24.59974 -23.47225 -22.36991 -21.06324 -19.66988 -19.28410 -18.78776 -17.53651 -16.22566 -15.72614 -15.25209 -14.78528 -14.51249 -14.12938 -13.91654 -13.68785 -13.37979 -13.07744 -12.90718 -12.64935 -12.39602 -12.15712 -11.91503 -11.77585 -11.59292 -11.23786 -10.83172 -10.61494 -10.47793 -10.22781 -10.11732 -9.91090 -9.75753 -9.69047 -9.56422 -9.37494 -8.59921 -8.41222 -8.02928 -6.42218 -4.08400 0.35410 0.84406 1.34113 2.47984 3.39434 3.46955 3.62060 3.79139 4.19805 4.47268 4.50043 4.57151 4.79403 4.89851 5.00452 5.28968 5.33484 5.38412 5.41773 5.48153 5.55367 5.59444 5.63353 5.77178 5.82844 5.99425 6.09701 6.24882 6.32180 6.44989 6.57675 6.78821 6.84202 7.19821 7.32567 7.40109 7.60467 8.13752 8.36832 8.50610 8.88832 9.61910 10.97865 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.034553 B = 0.003863 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.146673 B = 7246.117651 C = 7290.306806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.031 4.031 4 N -0.262 5.262 5 N -0.262 5.262 6 C 0.005 3.995 7 C 0.129 3.871 8 N -0.536 5.536 9 C 0.061 3.939 10 C -0.119 4.119 11 C -0.121 4.121 12 C 0.022 3.978 13 H 0.037 0.963 14 C -0.590 4.590 15 H 0.054 0.946 16 C 0.028 3.972 17 N -0.916 5.916 18 Si 1.056 2.944 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.276 1.276 22 C 0.078 3.922 23 S 0.188 5.812 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.266 0.734 38 H 0.028 0.972 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.718 -15.872 5.011 22.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 C -0.309 4.309 4 N -0.099 5.099 5 N -0.100 5.100 6 C -0.274 4.274 7 C -0.003 4.003 8 N -0.262 5.262 9 C -0.067 4.067 10 C -0.157 4.157 11 C -0.159 4.159 12 C 0.002 3.998 13 H 0.055 0.945 14 C -0.629 4.629 15 H 0.073 0.927 16 C -0.176 4.176 17 N -0.551 5.551 18 Si 0.886 3.114 19 H -0.212 1.212 20 H -0.219 1.219 21 H -0.202 1.202 22 C -0.048 4.048 23 S 0.432 5.568 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.029 -16.700 4.810 22.335 hybrid contribution -1.709 1.380 0.954 2.395 sum -15.738 -15.320 5.764 22.707 Atomic orbital electron populations 1.21787 0.93328 1.02750 1.02760 1.20120 0.96756 0.86738 1.04639 1.29219 1.05084 1.04211 0.92435 1.71416 1.12611 0.98932 1.26985 1.71472 1.13966 1.07402 1.17208 1.29162 1.02605 1.03330 0.92267 1.20549 0.91034 0.87525 1.01160 1.62098 1.01198 1.41522 1.21416 1.22065 0.95181 1.00168 0.89280 1.21672 0.93954 1.00181 0.99926 1.22004 0.99631 0.95470 0.98777 1.19175 0.89362 0.98400 0.92846 0.94521 1.22027 0.99267 1.00695 1.40906 0.92727 1.25769 0.96861 1.01590 0.93379 1.70820 1.37915 1.02951 1.43396 0.83831 0.75743 0.75563 0.76267 1.21193 1.21884 1.20206 1.22169 0.98800 0.87300 0.96545 1.83702 1.56446 1.05203 1.11417 0.91912 0.92298 0.91132 0.89308 0.88528 0.91554 0.88367 0.91528 0.94930 0.91968 0.92627 0.93050 0.92793 0.92384 0.95349 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.04 -0.31 6.54 -27.88 -0.18 -0.49 16 3 C -0.03 -0.35 6.78 -13.30 -0.09 -0.44 16 4 N -0.26 -3.86 11.66 32.58 0.38 -3.48 16 5 N -0.26 -4.14 10.75 32.58 0.35 -3.79 16 6 C 0.01 0.08 6.18 -13.29 -0.08 -0.01 16 7 C 0.13 1.84 5.57 -4.97 -0.03 1.81 16 8 N -0.54 -9.25 4.65 -236.11 -1.10 -10.35 16 9 C 0.06 1.06 5.31 -3.83 -0.02 1.04 16 10 C -0.12 -2.18 6.09 -26.65 -0.16 -2.35 16 11 C -0.12 -2.62 4.89 -26.61 -0.13 -2.75 16 12 C 0.02 0.50 1.84 -91.69 -0.17 0.34 16 13 H 0.04 0.89 6.65 -51.93 -0.35 0.55 16 14 C -0.59 -16.28 8.92 -34.44 -0.31 -16.58 16 15 H 0.05 1.61 7.98 -52.49 -0.42 1.19 16 16 C 0.03 0.80 5.43 -17.82 -0.10 0.71 16 17 N -0.92 -28.17 13.70 55.43 0.76 -27.42 16 18 Si 1.06 25.69 25.30 -169.99 -4.30 21.39 16 19 H -0.28 -6.63 6.79 56.52 0.38 -6.25 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.30 6.36 56.52 0.36 -5.94 16 22 C 0.08 1.55 4.68 -3.84 -0.02 1.53 16 23 S 0.19 2.10 23.04 -107.50 -2.48 -0.38 16 24 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 30 H 0.10 1.20 7.98 -51.93 -0.41 0.79 16 31 H 0.07 1.15 6.43 -51.93 -0.33 0.81 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 1.16 4.37 -51.93 -0.23 0.93 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.27 8.13 8.72 -40.82 -0.36 7.77 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 1.30 8.01 -51.93 -0.42 0.88 16 LS Contribution 321.16 15.07 4.84 4.84 Total: -1.00 -31.45 321.16 -8.48 -39.93 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -6.02 Total: -3.01 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -0.92 Total: -17.75 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.39 Total: -45.03 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -4.30 Total: 21.39 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.48 Total: -0.38 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.45 -8.48 -39.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620197.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.413 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds