Wall clock time and date at job start Tue Mar 31 2020 05:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29412 * 125.69620 * 2 1 4 4 N 1.26398 * 116.47270 * 180.02562 * 3 2 1 5 5 C 1.29414 * 116.48143 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.70184 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.47594 * 194.98011 * 6 5 4 8 8 C 1.53006 * 109.47062 * 74.97353 * 6 5 4 9 9 N 1.46903 * 109.46941 * 314.98032 * 6 5 4 10 10 C 1.46851 * 111.00239 * 66.04333 * 9 6 5 11 11 C 1.53039 * 109.52053 * 174.16385 * 10 9 6 12 12 C 1.53120 * 109.27995 * 59.17855 * 11 10 9 13 13 C 1.53116 * 109.16009 * 302.34132 * 12 11 10 14 14 H 1.09000 * 109.50650 * 297.67733 * 13 12 11 15 15 C 1.50701 * 109.49946 * 177.59543 * 13 12 11 16 16 H 1.08004 * 119.99835 * 239.99992 * 15 13 12 17 17 C 1.37873 * 120.00086 * 60.00829 * 15 13 12 18 18 N 1.31520 * 119.99798 * 359.97438 * 17 15 13 19 19 Si 1.86794 * 120.00209 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47434 * 89.99231 * 19 17 15 21 21 H 1.48494 * 109.47328 * 209.99797 * 19 17 15 22 22 H 1.48507 * 109.47143 * 329.99609 * 19 17 15 23 23 C 1.46849 * 110.99626 * 301.83403 * 9 6 5 24 24 S 1.71218 * 108.60223 * 0.02562 * 5 4 3 25 25 H 1.08991 * 109.47073 * 269.95588 * 1 2 3 26 26 H 1.08994 * 109.46881 * 29.96159 * 1 2 3 27 27 H 1.09001 * 109.46792 * 149.95548 * 1 2 3 28 28 H 1.09003 * 109.46999 * 180.02562 * 8 6 5 29 29 H 1.08994 * 109.46991 * 300.00520 * 8 6 5 30 30 H 1.08999 * 109.46621 * 60.00616 * 8 6 5 31 31 H 1.08995 * 109.45678 * 294.17616 * 10 9 6 32 32 H 1.08993 * 109.46058 * 54.14664 * 10 9 6 33 33 H 1.09000 * 109.49767 * 179.11985 * 11 10 9 34 34 H 1.09001 * 109.50046 * 299.19246 * 11 10 9 35 35 H 1.08997 * 109.52089 * 62.24831 * 12 11 10 36 36 H 1.09000 * 109.51520 * 182.43695 * 12 11 10 37 37 H 0.96994 * 119.99600 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.46273 * 305.85487 * 23 9 6 39 39 H 1.08997 * 109.46601 * 65.82408 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5098 0.8484 -0.0005 5 6 3.8937 -0.3875 -0.0004 6 6 5.3233 -0.8643 -0.0004 7 1 5.3539 -1.9209 -0.2660 8 6 5.9254 -0.6707 1.3928 9 7 6.0975 -0.0905 -0.9802 10 6 6.1989 1.3179 -0.5769 11 6 7.1294 2.0597 -1.5392 12 6 6.5728 1.9555 -2.9618 13 6 6.4317 0.4783 -3.3393 14 1 7.4137 0.0054 -3.3323 15 6 5.8291 0.3663 -4.7160 16 1 4.8920 -0.1525 -4.8548 17 6 6.4740 0.9259 -5.7985 18 7 7.6149 1.5580 -5.6295 19 14 5.7275 0.7865 -7.5051 20 1 4.8352 1.9476 -7.7515 21 1 6.8115 0.7710 -8.5198 22 1 4.9421 -0.4703 -7.6007 23 6 5.5212 -0.2176 -2.3249 24 16 2.5061 -1.3905 -0.0004 25 1 -0.3633 -0.0008 1.0276 26 1 -0.3633 0.8903 -0.5132 27 1 -0.3633 -0.8896 -0.5145 28 1 6.9596 -1.0152 1.3927 29 1 5.8947 0.3859 1.6582 30 1 5.3510 -1.2449 2.1197 31 1 5.2098 1.7752 -0.6033 32 1 6.5998 1.3780 0.4348 33 1 7.1921 3.1084 -1.2488 34 1 8.1226 1.6120 -1.5025 35 1 5.5965 2.4380 -3.0072 36 1 7.2550 2.4455 -3.6565 37 1 8.0685 1.9520 -6.3909 38 1 5.4301 -1.2728 -2.5827 39 1 4.5354 0.2469 -2.3430 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595620231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:59 Heat of formation + Delta-G solvation = 61.895316 kcal Electronic energy + Delta-G solvation = -20644.561839 eV Core-core repulsion = 17714.217050 eV Total energy + Delta-G solvation = -2930.344789 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.31477 -38.54508 -34.91425 -32.84594 -32.10365 -30.18819 -29.29458 -28.37458 -25.63826 -24.77069 -23.62792 -22.04283 -20.98727 -19.32793 -19.11395 -18.38041 -16.47725 -15.83242 -15.54042 -15.01788 -14.69423 -14.31506 -13.91536 -13.53574 -13.43354 -13.00148 -12.79647 -12.69643 -12.53563 -12.33347 -11.84817 -11.75676 -11.52038 -11.26663 -10.93099 -10.67705 -10.60980 -10.42099 -10.18045 -9.88550 -9.72172 -9.63990 -9.53086 -9.40021 -8.98772 -8.67164 -8.27092 -7.74089 -5.94804 -4.00937 0.50515 0.96503 1.41629 2.67251 3.32134 3.38651 3.41295 3.95240 4.32197 4.48228 4.69437 4.83992 5.01767 5.17292 5.18882 5.35201 5.44043 5.47674 5.61782 5.70022 5.88157 5.95404 6.02319 6.15183 6.26057 6.40408 6.46289 6.65546 6.80265 6.90256 6.98280 7.26738 7.41602 7.63812 7.73758 7.80723 8.10913 8.20870 8.50476 8.67027 9.02230 9.62965 11.11108 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.018065 B = 0.005730 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.621264 B = 4885.313046 C = 5755.795265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.026 4.026 3 N -0.262 5.262 4 N -0.249 5.249 5 C -0.023 4.023 6 C 0.157 3.843 7 H 0.101 0.899 8 C -0.141 4.141 9 N -0.509 5.509 10 C 0.042 3.958 11 C -0.116 4.116 12 C -0.110 4.110 13 C 0.058 3.942 14 H 0.035 0.965 15 C -0.514 4.514 16 H 0.051 0.949 17 C 0.064 3.936 18 N -0.887 5.887 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.065 3.935 24 S 0.142 5.858 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.029 0.971 36 H 0.090 0.910 37 H 0.259 0.741 38 H 0.056 0.944 39 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.435 -6.316 14.200 18.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.305 4.305 3 N -0.099 5.099 4 N -0.085 5.085 5 C -0.304 4.304 6 C 0.043 3.957 7 H 0.119 0.881 8 C -0.200 4.200 9 N -0.232 5.232 10 C -0.086 4.086 11 C -0.154 4.154 12 C -0.148 4.148 13 C 0.039 3.961 14 H 0.053 0.947 15 C -0.553 4.553 16 H 0.069 0.931 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.062 4.062 24 S 0.385 5.615 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -8.760 -6.042 14.061 17.634 hybrid contribution -1.309 0.385 -1.080 1.740 sum -10.068 -5.657 12.981 17.375 Atomic orbital electron populations 1.20325 0.84294 1.04579 1.03908 1.29097 1.04020 0.91973 1.05431 1.71456 0.97306 1.26957 1.14220 1.71413 1.05727 1.16756 1.14642 1.30935 1.03986 0.92682 1.02813 1.20741 0.80502 0.98996 0.95443 0.88112 1.21919 1.01662 1.03039 0.93343 1.62505 1.46761 1.11794 1.02114 1.22465 1.00798 0.87377 0.97962 1.21670 0.98834 0.97519 0.97367 1.21632 0.99682 1.00256 0.93193 1.18642 0.94913 0.91574 0.90983 0.94713 1.21110 1.07052 1.35189 0.91929 0.93101 1.24911 0.94832 0.95209 0.98764 1.69894 1.15764 1.36471 1.30460 0.86648 0.78843 0.78381 0.84433 1.20795 1.21167 1.20024 1.22362 0.97024 0.99942 0.86845 1.83581 0.98688 1.13140 1.66091 0.89469 0.88977 0.89905 0.90266 0.91380 0.92478 0.91699 0.92078 0.93511 0.92417 0.95209 0.89173 0.93062 0.92520 0.96167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.49 36.01 0.38 -0.23 16 2 C -0.03 -0.34 7.53 -13.30 -0.10 -0.44 16 3 N -0.26 -4.48 11.66 32.58 0.38 -4.10 16 4 N -0.25 -4.47 8.60 32.58 0.28 -4.19 16 5 C -0.02 -0.36 4.87 -13.30 -0.06 -0.42 16 6 C 0.16 2.34 2.99 -68.86 -0.21 2.13 16 7 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 8 C -0.14 -1.71 8.76 37.16 0.33 -1.38 16 9 N -0.51 -9.49 4.70 -228.08 -1.07 -10.56 16 10 C 0.04 0.78 4.66 -3.83 -0.02 0.77 16 11 C -0.12 -2.40 6.09 -26.65 -0.16 -2.56 16 12 C -0.11 -2.72 5.02 -26.61 -0.13 -2.86 16 13 C 0.06 1.48 2.27 -91.69 -0.21 1.27 16 14 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 15 C -0.51 -14.45 8.56 -34.44 -0.29 -14.75 16 16 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 17 C 0.06 1.81 5.30 -17.82 -0.09 1.72 16 18 N -0.89 -25.74 11.35 55.43 0.63 -25.11 16 19 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C 0.07 1.43 4.24 -3.83 -0.02 1.41 16 24 S 0.14 1.73 23.04 -107.50 -2.48 -0.74 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.89 6.20 -51.93 -0.32 0.57 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.34 5.51 -51.93 -0.29 1.05 16 32 H 0.06 1.02 5.87 -51.93 -0.30 0.71 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 2.47 6.15 -51.93 -0.32 2.16 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.06 1.21 8.12 -51.93 -0.42 0.78 16 39 H 0.02 0.47 7.09 -51.93 -0.37 0.10 16 LS Contribution 317.39 15.07 4.78 4.78 Total: -1.00 -31.30 317.39 -8.88 -40.19 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -5.79 Total: -1.58 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -0.59 Total: -15.35 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.22 Total: -43.96 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.48 Total: -0.74 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.30 -8.88 -40.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.081 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds