Wall clock time and date at job start Tue Mar 31 2020 05:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 N 1.29406 * 125.69496 * 2 1 4 4 N 1.26405 * 116.47357 * 179.67984 * 3 2 1 5 5 C 1.29412 * 116.47411 * 0.52870 * 4 3 2 6 6 C 1.50701 * 125.69765 * 179.77367 * 5 4 3 7 7 H 1.08993 * 109.47209 * 164.69567 * 6 5 4 8 8 C 1.53004 * 109.46579 * 284.69260 * 6 5 4 9 9 N 1.46900 * 109.47116 * 44.69291 * 6 5 4 10 10 C 1.46842 * 110.99998 * 55.79112 * 9 6 5 11 11 C 1.53036 * 109.52307 * 185.83785 * 10 9 6 12 12 C 1.53121 * 109.28048 * 300.82455 * 11 10 9 13 13 C 1.53113 * 109.16227 * 57.65066 * 12 11 10 14 14 H 1.09002 * 109.53279 * 62.30859 * 13 12 11 15 15 C 1.50697 * 109.50688 * 182.40893 * 13 12 11 16 16 H 1.07991 * 120.00449 * 119.52721 * 15 13 12 17 17 C 1.37885 * 119.99686 * 299.80553 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 13 20 20 H 1.48493 * 109.47326 * 90.00142 * 19 17 15 21 21 H 1.48506 * 109.46545 * 209.99892 * 19 17 15 22 22 H 1.48498 * 109.47210 * 329.99603 * 19 17 15 23 23 C 1.46842 * 110.99976 * 180.02562 * 9 6 5 24 24 S 1.71210 * 125.69497 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46788 * 270.04563 * 1 2 3 26 26 H 1.09002 * 109.46672 * 30.04097 * 1 2 3 27 27 H 1.08995 * 109.46745 * 150.04274 * 1 2 3 28 28 H 1.09001 * 109.46578 * 180.02562 * 8 6 5 29 29 H 1.08996 * 109.46983 * 299.99766 * 8 6 5 30 30 H 1.08993 * 109.47099 * 60.00240 * 8 6 5 31 31 H 1.09001 * 109.46706 * 305.85654 * 10 9 6 32 32 H 1.08998 * 109.46170 * 65.83178 * 10 9 6 33 33 H 1.09004 * 109.50351 * 60.76355 * 11 10 9 34 34 H 1.08997 * 109.50519 * 180.84169 * 11 10 9 35 35 H 1.09004 * 109.52003 * 297.74639 * 12 11 10 36 36 H 1.08996 * 109.52320 * 177.55847 * 12 11 10 37 37 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.46519 * 54.14321 * 23 9 6 39 39 H 1.09006 * 109.46167 * 294.17653 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2622 1.0510 0.0000 4 7 3.5099 0.8484 0.0063 5 6 3.8937 -0.3875 0.0014 6 6 5.3233 -0.8642 0.0024 7 1 5.3538 -1.9207 0.2687 8 6 5.9259 -0.6719 -1.3908 9 7 6.0971 -0.0897 0.9818 10 6 5.4883 -0.1701 2.3157 11 6 6.2333 0.7610 3.2748 12 6 7.7060 0.3470 3.3397 13 6 8.3034 0.3927 1.9306 14 1 8.2626 1.4134 1.5504 15 6 9.7368 -0.0703 1.9765 16 1 10.0426 -0.9373 1.4100 17 6 10.6565 0.6098 2.7464 18 7 10.2841 1.6658 3.4363 19 14 12.4316 0.0314 2.8093 20 1 13.2083 0.6995 1.7344 21 1 13.0175 0.3748 4.1300 22 1 12.4800 -1.4398 2.6138 23 6 7.4985 -0.5274 1.0100 24 16 2.5061 -1.3905 0.0006 25 1 -0.3633 0.0008 1.0277 26 1 -0.3633 0.8897 -0.5145 27 1 -0.3632 -0.8903 -0.5132 28 1 6.9598 -1.0172 -1.3902 29 1 5.3517 -1.2466 -2.1175 30 1 5.8954 0.3845 -1.6572 31 1 4.4424 0.1309 2.2563 32 1 5.5510 -1.1947 2.6823 33 1 6.1594 1.7877 2.9162 34 1 5.7906 0.6899 4.2683 35 1 7.7825 -0.6659 3.7351 36 1 8.2494 1.0342 3.9882 37 1 10.9313 2.1444 3.9775 38 1 7.9124 -0.4859 0.0025 39 1 7.5521 -1.5504 1.3826 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595620233.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:03 Heat of formation + Delta-G solvation = 59.312362 kcal Electronic energy + Delta-G solvation = -20233.980256 eV Core-core repulsion = 17303.523462 eV Total energy + Delta-G solvation = -2930.456794 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.32133 -38.54820 -34.94381 -32.96925 -32.29687 -30.06949 -29.62151 -28.25118 -25.66190 -24.78513 -23.72196 -21.78473 -21.26309 -19.38088 -19.13427 -18.50942 -16.50996 -15.96883 -15.55172 -15.18509 -14.58067 -14.22135 -14.11591 -13.39920 -13.31025 -13.23532 -12.96828 -12.73246 -12.64772 -12.48822 -12.09379 -11.71807 -11.40934 -11.21856 -10.93931 -10.70127 -10.67602 -10.41373 -10.14494 -10.12611 -9.83167 -9.75355 -9.53639 -9.44732 -9.03684 -8.68267 -8.29020 -7.73316 -5.95670 -4.02112 0.40890 0.82474 1.30218 2.61842 3.32070 3.38890 3.41122 3.90895 4.27426 4.44384 4.51543 4.77986 5.00366 5.10063 5.23713 5.34436 5.38682 5.45143 5.58785 5.61211 5.76351 5.80591 5.97398 6.05092 6.22725 6.30651 6.39551 6.50381 6.72288 6.76047 6.96511 7.22927 7.37248 7.60666 7.71559 7.78466 8.09807 8.19048 8.48386 8.63345 9.01934 9.62070 11.10420 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.038943 B = 0.004023 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.829663 B = 6957.992306 C = 7296.871268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.026 4.026 3 N -0.262 5.262 4 N -0.229 5.229 5 C 0.011 3.989 6 C 0.161 3.839 7 H 0.056 0.944 8 C -0.140 4.140 9 N -0.517 5.517 10 C 0.066 3.934 11 C -0.115 4.115 12 C -0.110 4.110 13 C 0.056 3.944 14 H 0.037 0.963 15 C -0.515 4.515 16 H 0.054 0.946 17 C 0.063 3.937 18 N -0.887 5.887 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.066 3.934 24 S 0.138 5.862 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.022 0.978 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.029 0.971 36 H 0.091 0.909 37 H 0.260 0.740 38 H 0.068 0.932 39 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.524 -7.846 -6.551 20.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.305 4.305 3 N -0.100 5.100 4 N -0.065 5.065 5 C -0.269 4.269 6 C 0.048 3.952 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.243 5.243 10 C -0.062 4.062 11 C -0.152 4.152 12 C -0.148 4.148 13 C 0.037 3.963 14 H 0.055 0.945 15 C -0.554 4.554 16 H 0.072 0.928 17 C -0.138 4.138 18 N -0.525 5.525 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.061 4.061 24 S 0.382 5.618 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.040 0.960 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -17.424 -6.852 -6.563 19.840 hybrid contribution 0.932 -1.071 0.437 1.486 sum -16.492 -7.923 -6.126 19.295 Atomic orbital electron populations 1.20338 0.84195 1.04419 1.04172 1.29193 1.04070 0.91826 1.05444 1.71548 0.97354 1.26786 1.14307 1.71468 1.05160 1.16702 1.13131 1.29292 1.02347 0.92096 1.03167 1.20125 0.83919 0.94931 0.96263 0.92624 1.21893 1.01391 1.03745 0.92900 1.62043 1.02963 1.53793 1.05524 1.22020 0.97244 0.97884 0.89078 1.21645 0.98238 0.99370 0.95990 1.21658 0.91526 0.99936 1.01670 1.18659 0.92141 0.95299 0.90169 0.94495 1.21121 0.93399 1.12978 1.27911 0.92810 1.24935 0.98518 0.94897 0.95459 1.69900 1.34178 1.18698 1.29766 0.86630 0.85282 0.78965 0.77300 1.20701 1.21314 1.20038 1.22462 0.84788 0.97554 1.01278 1.83604 0.98761 1.12743 1.66699 0.89297 0.88953 0.89945 0.90386 0.92616 0.90671 0.93145 0.95971 0.91820 0.93609 0.95178 0.89064 0.93044 0.91352 0.96115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.49 36.01 0.38 -0.12 16 2 C -0.03 -0.31 7.53 -13.29 -0.10 -0.41 16 3 N -0.26 -4.14 11.66 32.58 0.38 -3.76 16 4 N -0.23 -3.99 11.32 32.58 0.37 -3.62 16 5 C 0.01 0.16 4.69 -13.30 -0.06 0.10 16 6 C 0.16 2.46 2.60 -68.86 -0.18 2.29 16 7 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 8 C -0.14 -1.94 8.95 37.16 0.33 -1.61 16 9 N -0.52 -9.77 4.50 -228.09 -1.03 -10.80 16 10 C 0.07 1.23 5.23 -3.84 -0.02 1.21 16 11 C -0.11 -2.37 6.09 -26.65 -0.16 -2.53 16 12 C -0.11 -2.63 5.03 -26.61 -0.13 -2.76 16 13 C 0.06 1.40 2.26 -91.70 -0.21 1.20 16 14 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 15 C -0.52 -13.99 8.56 -34.44 -0.29 -14.28 16 16 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -25.40 11.37 55.43 0.63 -24.77 16 19 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.07 1.36 4.44 -3.84 -0.02 1.34 16 24 S 0.14 1.52 23.04 -107.50 -2.48 -0.95 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 1.06 6.28 -51.93 -0.33 0.74 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.05 0.92 6.51 -51.93 -0.34 0.59 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.07 1.36 6.01 -51.93 -0.31 1.05 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -30.62 322.65 -8.76 -39.38 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -5.91 Total: -2.57 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -0.56 Total: -13.91 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.35 Total: -42.96 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.48 Total: -0.95 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.62 -8.76 -39.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620233.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.691 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds