Wall clock time and date at job start Tue Mar 31 2020 05:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46962 * 2 1 4 4 C 1.50694 * 109.47232 * 179.97438 * 3 2 1 5 5 N 1.30130 * 121.06459 * 270.02771 * 4 3 2 6 6 S 1.69947 * 105.76371 * 179.71146 * 5 4 3 7 7 C 1.72303 * 94.57581 * 0.34094 * 6 5 4 8 8 N 1.38320 * 127.50255 * 179.97438 * 7 6 5 9 9 C 1.46848 * 111.00081 * 123.63576 * 8 7 6 10 10 C 1.53035 * 109.52142 * 185.83415 * 9 8 7 11 11 C 1.53114 * 109.28189 * 300.82150 * 10 9 8 12 12 C 1.53126 * 109.16071 * 57.65474 * 11 10 9 13 13 H 1.08997 * 109.50129 * 62.28942 * 12 11 10 14 14 C 1.50704 * 109.50215 * 182.40633 * 12 11 10 15 15 H 1.07996 * 119.99800 * 359.97438 * 14 12 11 16 16 C 1.37879 * 119.99793 * 179.97438 * 14 12 11 17 17 N 1.31512 * 120.00082 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99809 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47131 * 60.00257 * 18 16 14 20 20 H 1.48495 * 109.47020 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47090 * 300.00054 * 18 16 14 22 22 C 1.46847 * 110.99691 * 247.84375 * 8 7 6 23 23 N 1.31292 * 121.06026 * 89.99527 * 4 3 2 24 24 H 1.08999 * 109.46923 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47013 * 299.99637 * 1 2 3 26 26 H 1.08994 * 109.47592 * 59.99692 * 1 2 3 27 27 H 1.08991 * 109.47181 * 239.99829 * 2 1 3 28 28 H 1.08999 * 109.47108 * 119.99767 * 2 1 3 29 29 H 1.09005 * 109.47171 * 59.99820 * 3 2 1 30 30 H 1.08999 * 109.47019 * 299.99821 * 3 2 1 31 31 H 1.09000 * 109.46321 * 65.82319 * 9 8 7 32 32 H 1.09002 * 109.46191 * 305.84908 * 9 8 7 33 33 H 1.08994 * 109.50219 * 180.87675 * 10 9 8 34 34 H 1.09009 * 109.50165 * 60.76002 * 10 9 8 35 35 H 1.09001 * 109.52084 * 297.74913 * 11 10 9 36 36 H 1.09004 * 109.52756 * 177.55614 * 11 10 9 37 37 H 0.96995 * 120.00108 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.46634 * 54.14337 * 22 8 7 39 39 H 1.09006 * 109.46422 * 294.18233 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 7 4.2179 1.4423 1.1156 6 16 5.8573 1.4342 0.6678 7 6 5.5374 1.4420 -1.0252 8 7 6.4593 1.4407 -2.0564 9 6 6.2378 0.3037 -2.9589 10 6 7.3587 0.2508 -3.9995 11 6 7.3746 1.5604 -4.7926 12 6 7.5582 2.7323 -3.8242 13 1 8.5191 2.6390 -3.3182 14 6 7.5157 4.0294 -4.5902 15 1 7.3727 4.0199 -5.6606 16 6 7.6596 5.2282 -3.9244 17 7 7.8343 5.2397 -2.6210 18 14 7.6063 6.8360 -4.8738 19 1 6.2958 6.9621 -5.5606 20 1 7.7845 7.9719 -3.9341 21 1 8.6968 6.8522 -5.8816 22 6 6.4314 2.7132 -2.7888 23 7 4.2248 1.4424 -1.1238 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.2791 0.4221 -3.4637 32 1 6.2331 -0.6217 -2.3829 33 1 7.1857 -0.5839 -4.6787 34 1 8.3166 0.1186 -3.4961 35 1 6.4315 1.6739 -5.3272 36 1 8.1990 1.5446 -5.5056 37 1 7.9351 6.0830 -2.1526 38 1 6.5672 3.5380 -2.0892 39 1 5.4717 2.8204 -3.2943 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596326525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:18 Heat of formation + Delta-G solvation = 35.373947 kcal Electronic energy + Delta-G solvation = -20037.472471 eV Core-core repulsion = 17105.977629 eV Total energy + Delta-G solvation = -2931.494842 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.25833 -38.30367 -34.97498 -33.77611 -32.54031 -30.70424 -29.72185 -28.24478 -25.11413 -24.94631 -22.60367 -21.87109 -21.24114 -19.76274 -18.68146 -18.39522 -16.84301 -15.88371 -15.21298 -14.98124 -14.78398 -14.52288 -14.13724 -13.71908 -13.17193 -13.13904 -12.76862 -12.52595 -12.40121 -12.07894 -12.02978 -11.47911 -11.35475 -11.22266 -11.02293 -10.90685 -10.80136 -10.58587 -10.37153 -10.29876 -9.88869 -9.78058 -9.50808 -9.15758 -9.08219 -8.77428 -8.47569 -8.16089 -6.10236 -4.17083 0.69843 1.43068 2.03344 2.78759 3.27363 3.32911 3.34836 3.91549 4.35176 4.51988 4.87592 4.92907 5.06571 5.23094 5.39613 5.41524 5.49991 5.57626 5.68178 5.71799 5.75420 5.83978 5.98014 6.05989 6.10403 6.17071 6.26704 6.32776 6.50432 6.57660 6.77493 6.85345 6.93874 7.28096 7.50368 7.61231 7.80638 7.85253 7.96688 8.32193 8.87217 9.48669 10.95822 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.017732 B = 0.004883 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.653537 B = 5733.040313 C = 6083.607141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.031 4.031 4 C 0.271 3.729 5 N -0.494 5.494 6 S 0.240 5.760 7 C 0.288 3.712 8 N -0.459 5.459 9 C 0.068 3.932 10 C -0.115 4.115 11 C -0.114 4.114 12 C 0.056 3.944 13 H 0.039 0.961 14 C -0.516 4.516 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.070 3.930 23 N -0.544 5.544 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.264 0.736 38 H 0.109 0.891 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.272 -10.035 4.161 13.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.073 4.073 4 C -0.021 4.021 5 N -0.326 5.326 6 S 0.382 5.618 7 C -0.089 4.089 8 N -0.184 5.184 9 C -0.061 4.061 10 C -0.153 4.153 11 C -0.152 4.152 12 C 0.037 3.963 13 H 0.057 0.943 14 C -0.555 4.555 15 H 0.078 0.922 16 C -0.139 4.139 17 N -0.526 5.526 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.056 4.056 23 N -0.271 5.271 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.127 0.873 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.508 -9.943 5.775 13.733 hybrid contribution -1.162 1.112 -1.578 2.253 sum -8.670 -8.831 4.198 13.068 Atomic orbital electron populations 1.21745 0.95049 1.01810 1.02052 1.21451 0.96068 0.95293 1.02632 1.20250 0.84166 0.98715 1.04199 1.23206 0.99528 0.96081 0.83264 1.77471 0.99435 1.29055 1.26612 1.84839 1.10376 1.64364 1.02183 1.26803 0.88875 0.92828 1.00347 1.60224 1.39095 1.07924 1.11126 1.22118 0.98920 0.91493 0.93600 1.21633 0.98242 0.98787 0.96598 1.21721 1.00626 0.94363 0.98495 1.18718 0.94336 0.92206 0.91055 0.94261 1.21118 1.50053 0.90351 0.93954 0.92245 1.25018 0.94660 0.99290 0.94934 1.69825 1.48908 1.26706 1.07165 0.86629 0.78671 0.82861 0.79744 1.20250 1.21228 1.20104 1.22834 0.99535 0.85713 0.97507 1.68101 1.06186 1.22683 1.30146 0.92536 0.92552 0.92397 0.91502 0.91740 0.89440 0.89036 0.93434 0.91925 0.92221 0.91383 0.93302 0.92675 0.92650 0.87316 0.95240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 3 C -0.03 -0.39 5.75 -27.89 -0.16 -0.55 16 4 C 0.27 4.55 6.82 -159.03 -1.08 3.46 16 5 N -0.49 -8.59 12.15 29.54 0.36 -8.24 16 6 S 0.24 4.21 23.81 -107.50 -2.56 1.65 16 7 C 0.29 5.56 6.28 -86.35 -0.54 5.02 16 8 N -0.46 -9.17 4.71 -174.57 -0.82 -10.00 16 9 C 0.07 1.17 5.34 -3.83 -0.02 1.15 16 10 C -0.11 -1.88 6.09 -26.65 -0.16 -2.05 16 11 C -0.11 -2.24 5.23 -26.61 -0.14 -2.38 16 12 C 0.06 1.33 2.26 -91.69 -0.21 1.13 16 13 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.52 -13.57 8.56 -34.44 -0.29 -13.86 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.59 11.34 55.43 0.63 -23.96 16 18 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 C 0.07 1.63 4.44 -3.84 -0.02 1.61 16 23 N -0.54 -10.21 10.54 -14.58 -0.15 -10.37 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.12 8.14 -51.92 -0.42 0.69 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.11 2.88 6.07 -51.93 -0.32 2.56 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 329.53 15.07 4.97 4.97 Total: -1.00 -27.74 329.53 -11.31 -39.05 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -6.20 Total: -1.63 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -2.51 Total: -7.19 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.01 Total: -52.55 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -2.56 Total: 1.65 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.74 -11.31 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596326525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.421 kcal (2) G-P(sol) polarization free energy of solvation -27.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds