Wall clock time and date at job start Tue Mar 31 2020 05:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47045 * 2 1 4 4 C 1.50699 * 109.46766 * 180.02562 * 3 2 1 5 5 N 1.30132 * 121.06248 * 90.02814 * 4 3 2 6 6 S 1.69949 * 105.76566 * 179.97438 * 5 4 3 7 7 C 1.72309 * 94.57308 * 359.97438 * 6 5 4 8 8 N 1.38313 * 127.50320 * 179.97438 * 7 6 5 9 9 C 1.46847 * 111.00069 * 236.07328 * 8 7 6 10 10 C 1.53044 * 109.51335 * 174.15660 * 9 8 7 11 11 C 1.53119 * 109.27589 * 59.18419 * 10 9 8 12 12 C 1.53120 * 109.16202 * 302.34077 * 11 10 9 13 13 H 1.09004 * 109.50202 * 297.68149 * 12 11 10 14 14 C 1.50699 * 109.50194 * 177.59981 * 12 11 10 15 15 H 1.07995 * 119.99855 * 359.97438 * 14 12 11 16 16 C 1.37879 * 119.99833 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99790 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 119.99941 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47377 * 89.99975 * 18 16 14 20 20 H 1.48503 * 109.46890 * 210.00187 * 18 16 14 21 21 H 1.48496 * 109.47075 * 329.99833 * 18 16 14 22 22 C 1.46847 * 110.99009 * 111.86547 * 8 7 6 23 23 N 1.31286 * 121.06381 * 270.32027 * 4 3 2 24 24 H 1.09003 * 109.47211 * 59.99844 * 1 2 3 25 25 H 1.09000 * 109.47553 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47024 * 300.00161 * 1 2 3 27 27 H 1.09001 * 109.46775 * 240.00302 * 2 1 3 28 28 H 1.08993 * 109.46678 * 120.00147 * 2 1 3 29 29 H 1.08999 * 109.47341 * 60.00033 * 3 2 1 30 30 H 1.09003 * 109.47243 * 300.00136 * 3 2 1 31 31 H 1.09002 * 109.46448 * 54.14382 * 9 8 7 32 32 H 1.08994 * 109.45958 * 294.16747 * 9 8 7 33 33 H 1.09000 * 109.49745 * 179.12223 * 10 9 8 34 34 H 1.08996 * 109.50070 * 299.23917 * 10 9 8 35 35 H 1.08993 * 109.52284 * 62.25342 * 11 10 9 36 36 H 1.09003 * 109.51690 * 182.37761 * 11 10 9 37 37 H 0.97003 * 119.99685 * 180.02562 * 17 16 14 38 38 H 1.09005 * 109.46836 * 65.84003 * 22 8 7 39 39 H 1.08994 * 109.46332 * 305.86019 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.2180 1.4431 -1.1156 6 16 5.8574 1.4435 -0.6680 7 6 5.5375 1.4434 1.0252 8 7 6.4594 1.4432 2.0563 9 6 6.2394 0.3056 2.9585 10 6 7.3607 0.2541 3.9989 11 6 7.3747 1.5636 4.7923 12 6 7.5565 2.7359 3.8241 13 1 8.5177 2.6445 3.3184 14 6 7.5123 4.0327 4.5905 15 1 7.3687 4.0228 5.6608 16 6 7.6544 5.2319 3.9250 17 7 7.8279 5.2439 2.6213 18 14 7.5990 6.8394 4.8747 19 1 8.9707 7.2039 5.3114 20 1 7.0560 7.9114 4.0021 21 1 6.7261 6.6809 6.0655 22 6 6.4296 2.7155 2.7888 23 7 4.2249 1.4359 1.1236 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 6.2358 -0.6196 2.3823 32 1 5.2806 0.4227 3.4634 33 1 7.1888 -0.5810 4.6780 34 1 8.3185 0.1233 3.4954 35 1 6.4316 1.6756 5.3271 36 1 8.1985 1.5482 5.5059 37 1 7.9282 6.0875 2.1532 38 1 5.4698 2.8211 3.2947 39 1 6.5641 3.5405 2.0894 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596326526.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:21 Heat of formation + Delta-G solvation = 35.339123 kcal Electronic energy + Delta-G solvation = -20037.761482 eV Core-core repulsion = 17106.265130 eV Total energy + Delta-G solvation = -2931.496352 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.25864 -38.30437 -34.97486 -33.77713 -32.54063 -30.70436 -29.72213 -28.24413 -25.11634 -24.94632 -22.60161 -21.87340 -21.24341 -19.76216 -18.68088 -18.39683 -16.84438 -15.88670 -15.21114 -14.98064 -14.78391 -14.52013 -14.13781 -13.71759 -13.17513 -13.13673 -12.77160 -12.52798 -12.40090 -12.07886 -12.03443 -11.47759 -11.35424 -11.22153 -11.03930 -10.90930 -10.80080 -10.55630 -10.37717 -10.29865 -9.89110 -9.78174 -9.50826 -9.16094 -9.07798 -8.77428 -8.47790 -8.15985 -6.10570 -4.17280 0.69893 1.43092 2.03408 2.78738 3.25832 3.33299 3.35908 3.91566 4.35011 4.52016 4.87661 4.92960 5.06596 5.22906 5.39637 5.41540 5.50014 5.57667 5.68199 5.71809 5.75461 5.84000 5.98046 6.06045 6.10465 6.17120 6.26694 6.32688 6.50357 6.57552 6.77576 6.85248 6.93752 7.28016 7.50384 7.61147 7.80567 7.85241 7.96530 8.32064 8.87300 9.48549 10.95508 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.004884 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.524466 B = 5731.229789 C = 6082.153340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.031 4.031 4 C 0.271 3.729 5 N -0.494 5.494 6 S 0.240 5.760 7 C 0.288 3.712 8 N -0.459 5.459 9 C 0.068 3.932 10 C -0.115 4.115 11 C -0.114 4.114 12 C 0.056 3.944 13 H 0.039 0.961 14 C -0.515 4.515 15 H 0.060 0.940 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.893 3.107 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.070 3.930 23 N -0.545 5.545 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.263 0.737 38 H 0.029 0.971 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.259 -10.023 -4.148 13.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.073 4.073 4 C -0.021 4.021 5 N -0.326 5.326 6 S 0.382 5.618 7 C -0.088 4.088 8 N -0.184 5.184 9 C -0.061 4.061 10 C -0.153 4.153 11 C -0.152 4.152 12 C 0.036 3.964 13 H 0.057 0.943 14 C -0.554 4.554 15 H 0.078 0.922 16 C -0.139 4.139 17 N -0.526 5.526 18 Si 0.721 3.279 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.056 4.056 23 N -0.271 5.271 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.502 -9.936 -5.758 13.717 hybrid contribution -1.150 1.107 1.566 2.236 sum -8.652 -8.829 -4.192 13.053 Atomic orbital electron populations 1.21746 0.95053 1.01809 1.02050 1.21451 0.96066 0.95296 1.02632 1.20250 0.84164 0.98716 1.04197 1.23205 0.99526 0.96073 0.83263 1.77472 0.99436 1.29067 1.26612 1.84843 1.10368 1.64378 1.02170 1.26804 0.88873 0.92825 1.00346 1.60222 1.39117 1.07902 1.11126 1.22118 0.98925 0.91482 0.93604 1.21635 0.98240 0.98786 0.96601 1.21718 1.00636 0.94361 0.98480 1.18722 0.94344 0.92219 0.91068 0.94257 1.21154 1.49919 0.90329 0.93986 0.92194 1.25022 0.94683 0.99306 0.94929 1.69840 1.49028 1.26579 1.07155 0.86570 0.78354 0.83147 0.79853 1.20512 1.21214 1.19855 1.22833 0.99532 0.85719 0.97500 1.68096 1.06173 1.22716 1.30147 0.92553 0.92537 0.92398 0.91744 0.91496 0.89035 0.89439 0.91925 0.93427 0.92223 0.91383 0.93307 0.92680 0.92713 0.95238 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 3 C -0.03 -0.39 5.75 -27.88 -0.16 -0.55 16 4 C 0.27 4.55 6.82 -159.04 -1.08 3.47 16 5 N -0.49 -8.60 12.15 29.54 0.36 -8.24 16 6 S 0.24 4.21 23.81 -107.50 -2.56 1.65 16 7 C 0.29 5.56 6.28 -86.36 -0.54 5.02 16 8 N -0.46 -9.17 4.71 -174.56 -0.82 -9.99 16 9 C 0.07 1.17 5.34 -3.83 -0.02 1.15 16 10 C -0.11 -1.88 6.09 -26.65 -0.16 -2.05 16 11 C -0.11 -2.24 5.22 -26.61 -0.14 -2.38 16 12 C 0.06 1.32 2.26 -91.69 -0.21 1.12 16 13 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.52 -13.54 8.56 -34.44 -0.29 -13.83 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 17 N -0.89 -24.58 11.34 55.43 0.63 -23.95 16 18 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 C 0.07 1.63 4.44 -3.83 -0.02 1.61 16 23 N -0.54 -10.21 10.53 -14.57 -0.15 -10.36 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.11 2.88 6.07 -51.93 -0.32 2.56 16 LS Contribution 329.52 15.07 4.97 4.97 Total: -1.00 -27.75 329.52 -11.31 -39.06 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.20 Total: -1.66 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -2.51 Total: -7.17 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.01 Total: -52.54 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -2.56 Total: 1.65 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.75 -11.31 -39.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596326526.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.398 kcal (2) G-P(sol) polarization free energy of solvation -27.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds