Wall clock time and date at job start Tue Mar 31 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47040 * 2 1 4 4 C 1.50694 * 109.47272 * 119.99870 * 2 1 3 5 5 N 1.30130 * 121.06459 * 300.02996 * 4 2 1 6 6 S 1.69947 * 105.76371 * 179.71146 * 5 4 2 7 7 C 1.72303 * 94.57581 * 0.34094 * 6 5 4 8 8 N 1.38320 * 127.50255 * 179.97438 * 7 6 5 9 9 C 1.46848 * 111.00081 * 123.63576 * 8 7 6 10 10 C 1.53035 * 109.52142 * 185.83415 * 9 8 7 11 11 C 1.53114 * 109.28189 * 300.82150 * 10 9 8 12 12 C 1.53126 * 109.16071 * 57.65474 * 11 10 9 13 13 H 1.08997 * 109.50129 * 62.28942 * 12 11 10 14 14 C 1.50704 * 109.50215 * 182.40633 * 12 11 10 15 15 H 1.07996 * 119.99800 * 359.97438 * 14 12 11 16 16 C 1.37879 * 119.99793 * 179.97438 * 14 12 11 17 17 N 1.31512 * 120.00082 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99809 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47131 * 60.00257 * 18 16 14 20 20 H 1.48495 * 109.47020 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47090 * 300.00054 * 18 16 14 22 22 C 1.46847 * 110.99691 * 247.84375 * 8 7 6 23 23 N 1.31292 * 121.06026 * 119.99752 * 4 2 1 24 24 H 1.09004 * 109.47500 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47503 * 299.99714 * 1 2 3 26 26 H 1.09002 * 109.47605 * 59.99987 * 1 2 3 27 27 H 1.08997 * 109.46942 * 240.00343 * 2 1 3 28 28 H 1.08997 * 109.47179 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.46936 * 300.00112 * 3 2 1 30 30 H 1.09007 * 109.46739 * 59.99818 * 3 2 1 31 31 H 1.09000 * 109.46321 * 65.82319 * 9 8 7 32 32 H 1.09002 * 109.46191 * 305.84908 * 9 8 7 33 33 H 1.08994 * 109.50219 * 180.87675 * 10 9 8 34 34 H 1.09009 * 109.50165 * 60.76002 * 10 9 8 35 35 H 1.09001 * 109.52084 * 297.74913 * 11 10 9 36 36 H 1.09004 * 109.52756 * 177.55614 * 11 10 9 37 37 H 0.96995 * 120.00108 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.46634 * 54.14337 * 22 8 7 39 39 H 1.09006 * 109.46422 * 294.18233 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2304 5 7 1.7302 -0.2841 2.4222 6 16 2.4815 -1.3604 3.5017 7 6 3.1793 -2.3332 2.2626 8 7 3.9718 -3.4559 2.4194 9 6 3.3951 -4.6095 1.7170 10 6 4.2163 -5.8621 2.0309 11 6 5.6647 -5.6418 1.5858 12 6 6.2261 -4.4064 2.2952 13 1 6.2319 -4.5763 3.3719 14 6 7.6321 -4.1478 1.8182 15 1 8.0812 -4.7991 1.0831 16 6 8.3449 -3.0797 2.3204 17 7 7.7981 -2.2870 3.2160 18 14 10.0874 -2.7588 1.7286 19 1 10.0770 -2.5254 0.2621 20 1 10.6311 -1.5607 2.4170 21 1 10.9394 -3.9354 2.0366 22 6 5.3466 -3.1960 1.9737 23 7 2.7882 -1.7795 1.1342 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6765 1.9563 0.8900 31 1 3.4100 -4.4252 0.6428 32 1 2.3665 -4.7577 2.0458 33 1 3.7973 -6.7151 1.4971 34 1 4.1905 -6.0548 3.1035 35 1 5.6948 -5.4876 0.5072 36 1 6.2628 -6.5149 1.8468 37 1 8.2994 -1.5354 3.5689 38 1 5.7355 -2.3175 2.4887 39 1 5.3524 -3.0182 0.8982 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596332194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:33 Heat of formation + Delta-G solvation = 38.329523 kcal Electronic energy + Delta-G solvation = -20237.852609 eV Core-core repulsion = 17306.485931 eV Total energy + Delta-G solvation = -2931.366678 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -40.32368 -38.35971 -35.13124 -33.60778 -32.43031 -30.57617 -29.71978 -27.22838 -25.75516 -25.11077 -23.56448 -21.86050 -20.84684 -19.42459 -18.78386 -18.35435 -16.79561 -15.82503 -15.21101 -15.12438 -14.55880 -14.24719 -14.12301 -13.73174 -13.16145 -12.95026 -12.78863 -12.49261 -12.22063 -12.21465 -12.00835 -11.59819 -11.25410 -11.18767 -11.02229 -10.90771 -10.87658 -10.58450 -10.36703 -10.29665 -9.87626 -9.77370 -9.50126 -9.15581 -9.08236 -8.76933 -8.47447 -8.15693 -6.10120 -4.16918 0.70832 1.43935 2.03776 2.81054 3.27385 3.32884 3.34852 3.88039 4.34922 4.50032 4.86094 5.06021 5.15267 5.23472 5.41685 5.49937 5.55990 5.64086 5.70402 5.75833 5.77593 5.90887 5.95073 6.05479 6.16259 6.25082 6.27875 6.33001 6.50604 6.57854 6.77678 6.85557 6.94054 7.28435 7.50599 7.61552 7.80830 7.86658 7.96856 8.32333 8.87354 9.48784 10.95949 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.005389 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.252724 B = 5194.162803 C = 5894.009701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.007 4.007 3 C -0.142 4.142 4 C 0.274 3.726 5 N -0.489 5.489 6 S 0.240 5.760 7 C 0.288 3.712 8 N -0.459 5.459 9 C 0.067 3.933 10 C -0.115 4.115 11 C -0.114 4.114 12 C 0.056 3.944 13 H 0.039 0.961 14 C -0.516 4.516 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.070 3.930 23 N -0.546 5.546 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.263 0.737 38 H 0.109 0.891 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.396 1.605 -3.685 13.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.031 4.031 3 C -0.200 4.200 4 C -0.017 4.017 5 N -0.320 5.320 6 S 0.382 5.618 7 C -0.089 4.089 8 N -0.184 5.184 9 C -0.061 4.061 10 C -0.153 4.153 11 C -0.152 4.152 12 C 0.037 3.963 13 H 0.057 0.943 14 C -0.554 4.554 15 H 0.078 0.922 16 C -0.139 4.139 17 N -0.526 5.526 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.056 4.056 23 N -0.272 5.272 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -12.831 2.360 -2.125 13.218 hybrid contribution 1.281 0.088 -1.885 2.281 sum -11.551 2.448 -4.010 12.469 Atomic orbital electron populations 1.21807 0.93284 1.02139 1.02579 1.19767 0.96110 0.95489 0.91698 1.21816 1.01516 0.94154 1.02521 1.23155 0.93449 0.90736 0.94371 1.77411 1.26837 1.24350 1.03449 1.84840 1.40401 1.18443 1.18152 1.26792 0.94753 0.96575 0.90804 1.60225 1.03738 0.98624 1.55789 1.22118 0.97457 0.89860 0.96703 1.21632 0.96928 0.94896 1.01801 1.21722 0.93356 1.00265 0.99864 1.18722 0.92547 0.88156 0.96921 0.94255 1.21114 0.97651 1.12196 1.24461 0.92249 1.25019 0.98240 0.96000 0.94658 1.69825 1.37310 1.16643 1.28836 0.86630 0.84594 0.77749 0.78935 1.20254 1.21232 1.20099 1.22832 0.79931 1.05112 0.97716 1.68116 1.17310 1.11877 1.29902 0.92677 0.91725 0.91640 0.88577 0.92388 0.91641 0.91713 0.93446 0.91923 0.92220 0.91382 0.93302 0.92671 0.92656 0.87315 0.95255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.11 37.15 0.34 -1.17 16 2 C -0.01 -0.09 3.31 -91.78 -0.30 -0.39 16 3 C -0.14 -1.67 9.11 37.16 0.34 -1.33 16 4 C 0.27 4.63 6.21 -159.03 -0.99 3.64 16 5 N -0.49 -8.40 11.84 29.54 0.35 -8.05 16 6 S 0.24 4.19 23.81 -107.50 -2.56 1.63 16 7 C 0.29 5.57 6.28 -86.35 -0.54 5.03 16 8 N -0.46 -9.22 4.71 -174.57 -0.82 -10.04 16 9 C 0.07 1.17 5.34 -3.83 -0.02 1.15 16 10 C -0.11 -1.89 6.09 -26.65 -0.16 -2.05 16 11 C -0.11 -2.25 5.23 -26.61 -0.14 -2.39 16 12 C 0.06 1.33 2.26 -91.69 -0.21 1.12 16 13 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 14 C -0.52 -13.56 8.56 -34.44 -0.29 -13.86 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.61 11.34 55.43 0.63 -23.98 16 18 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 22 C 0.07 1.64 4.44 -3.84 -0.02 1.62 16 23 N -0.55 -10.33 10.53 -14.58 -0.15 -10.48 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.11 2.88 6.07 -51.93 -0.32 2.57 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 328.42 15.07 4.95 4.95 Total: -1.00 -27.72 328.42 -10.91 -38.63 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -6.19 Total: -1.33 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.09 Total: -7.04 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.00 Total: -52.56 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -2.56 Total: 1.63 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.72 -10.91 -38.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596332194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.955 kcal (2) G-P(sol) polarization free energy of solvation -27.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds